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Haley J. Abel, Ph.D. - Publications

Affiliations: 
Washington University, Saint Louis, St. Louis, MO 
Area:
mathematical genetics, probability, statistics
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gomez F, Fisk B, McMichael JF, Mosior M, Foltz JA, Skidmore ZL, Duncavage EJ, Miller CA, Abel H, Lee YS, Krysiak K, Russler-Germain DA, Watkins MP, Ramirez CA, Schmidt A, et al. Ultra-Deep Sequencing Reveals the Mutational Landscape of Classical Hodgkin Lymphoma. Cancer Research Communications. PMID 37910143 DOI: 10.1158/2767-9764.CRC-23-0140  0.374
2023 Abel HJ, Oetjen KA, Miller CA, Ramakrishnan SM, Day RB, Helton NM, Fronick CC, Fulton RS, Heath SE, Tarnawsky SP, Nonavinkere Srivatsan S, Duncavage EJ, Schroeder MC, Payton JE, Spencer DH, et al. Genomic landscape of TP53-mutated myeloid malignancies. Blood Advances. PMID 37339484 DOI: 10.1182/bloodadvances.2023010156  0.365
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.345
2023 Abel HJ, Oetjen KA, Miller CA, Ramakrishnan SM, Day RB, Helton NM, Fronick CC, Fulton RS, Heath SE, Tarnawsky SP, Srivatsan SN, Duncavage EJ, Schroeder MC, Payton JE, Spencer DH, et al. Genomic landscape of -mutated myeloid malignancies. Medrxiv : the Preprint Server For Health Sciences. PMID 36711871 DOI: 10.1101/2023.01.10.23284322  0.373
2022 Byrska-Bishop M, Evani US, Zhao X, Basile AO, Abel HJ, Regier AA, Corvelo A, Clarke WE, Musunuri R, Nagulapalli K, Fairley S, Runnels A, Winterkorn L, Lowy E, Germer S, et al. High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios. Cell. 185: 3426-3440.e19. PMID 36055201 DOI: 10.1016/j.cell.2022.08.004  0.347
2021 Chen L, Abel HJ, Das I, Larson DE, Ganel L, Kanchi KL, Regier AA, Young EP, Kang CJ, Scott AJ, Chiang C, Wang X, Lu S, Christ R, Service SK, et al. Association of structural variation with cardiometabolic traits in Finns. American Journal of Human Genetics. 108: 583-596. PMID 33798444 DOI: 10.1016/j.ajhg.2021.03.008  0.328
2021 Ebert P, Audano PA, Zhu Q, Rodriguez-Martin B, Porubsky D, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz F, Zhao X, Hsieh P, Lee J, Kumar S, ... ... Abel HJ, et al. Haplotype-resolved diverse human genomes and integrated analysis of structural variation. Science (New York, N.Y.). PMID 33632895 DOI: 10.1126/science.abf7117  0.327
2020 Abel HJ, Larson DE, Regier AA, Chiang C, Das I, Kanchi KL, Layer RM, Neale BM, Salerno WJ, Reeves C, Buyske S, Matise TC, Muzny DM, Zody MC, et al. Mapping and characterization of structural variation in 17,795 human genomes. Nature. PMID 32460305 DOI: 10.1038/s41586-020-2371-0  0.35
2019 Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ, Kanchi KL, Koboldt DC, Larson DE, et al. Author Correction: Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. PMID 31686056 DOI: 10.1038/S41586-019-1726-X  0.345
2019 Locke AE, Steinberg KM, Chiang CWK, Service SK, Havulinna AS, Stell L, Pirinen M, Abel HJ, Chiang CC, Fulton RS, Jackson AU, Kang CJ, Kanchi KL, Koboldt DC, Larson DE, et al. Exome sequencing of Finnish isolates enhances rare-variant association power. Nature. PMID 31367044 DOI: 10.1038/S41586-019-1457-Z  0.439
2019 Larson DE, Abel HJ, Chiang C, Badve A, Das I, Eldred JM, Layer RM, Hall IM. svtools: population-scale analysis of structural variation. Bioinformatics (Oxford, England). PMID 31218349 DOI: 10.1093/Bioinformatics/Btz492  0.385
2018 Duncavage EJ, Jacoby MA, Chang GS, Miller CA, Edwin N, Shao J, Elliott K, Robinson J, Abel H, Fulton RS, Fronick CC, O'Laughlin M, Heath SE, Brendel K, Saba R, et al. Mutation Clearance after Transplantation for Myelodysplastic Syndrome. The New England Journal of Medicine. 379: 1028-1041. PMID 30207916 DOI: 10.1056/Nejmoa1804714  0.356
2018 Rosenbaum JN, Bloom R, Forys JT, Hiken J, Armstrong JR, Branson J, McNulty S, Velu PD, Pepin K, Abel H, Cottrell CE, Pfeifer JD, Kulkarni S, Govindan R, Konnick EQ, et al. Genomic heterogeneity of ALK fusion breakpoints in non-small-cell lung cancer. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. PMID 29327716 DOI: 10.1038/Modpathol.2017.181  0.371
2017 Lee PJ, Yoo NS, Hagemann IS, Pfeifer JD, Cottrell CE, Abel HJ, Duncavage EJ. Spectrum of Mutations in Leiomyosarcomas Identified By Clinical Targeted Next-Generation Sequencing. Experimental and Molecular Pathology. PMID 28093192 DOI: 10.1016/J.Yexmp.2017.01.012  0.465
2016 Ganel L, Abel HJ, Consortium F, Hall IM. SVScore: An Impact Prediction Tool For Structural Variation. Bioinformatics (Oxford, England). PMID 28031184 DOI: 10.1093/Bioinformatics/Btw789  0.381
2016 Duncavage EJ, Abel HJ, Pfeifer JD. In Silico Proficiency Testing for Clinical Next-Generation Sequencing. The Journal of Molecular Diagnostics : Jmd. PMID 27863262 DOI: 10.1016/J.Jmoldx.2016.09.005  0.427
2016 Druley TE, Wang L, Lin SJ, Lee JH, Zhang Q, Daw EW, Abel HJ, Chasnoff SE, Ramos EI, Levinson BT, Thyagarajan B, Newman AB, Christensen K, Mayeux R, Province MA. Candidate gene resequencing to identify rare, pedigree-specific variants influencing healthy aging phenotypes in the long life family study. Bmc Geriatrics. 16: 80. PMID 27060904 DOI: 10.1186/S12877-016-0253-Y  0.319
2015 Sehn JK, Spencer DH, Pfeifer JD, Bredemeyer AJ, Cottrell CE, Abel HJ, Duncavage EJ. Occult Specimen Contamination in Routine Clinical Next-Generation Sequencing Testing. American Journal of Clinical Pathology. 144: 667-74. PMID 26386089 DOI: 10.1309/Ajcpr88Wdjjldmbn  0.412
2015 Sufficool KE, Lockwood CM, Abel HJ, Hagemann IS, Schumacher JA, Kelley TW, Duncavage EJ. T-cell clonality assessment by next-generation sequencing improves detection sensitivity in mycosis fungoides. Journal of the American Academy of Dermatology. 73: 228-36.e2. PMID 26048061 DOI: 10.1016/J.Jaad.2015.04.030  0.376
2015 Hirbe AC, Dahiya S, Miller CA, Li T, Fulton RS, Zhang X, McDonald S, DeSchryver K, Duncavage EJ, Walrath J, Reilly KM, Abel HJ, Pekmezci M, Perry A, Ley TJ, et al. Whole Exome Sequencing Reveals the Order of Genetic Changes during Malignant Transformation and Metastasis in a Single Patient with NF1-plexiform Neurofibroma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 25925892 DOI: 10.1158/1078-0432.Ccr-14-3049  0.312
2015 Cimino PJ, Bredemeyer A, Abel HJ, Duncavage EJ. A wide spectrum of EGFR mutations in glioblastoma is detected by a single clinical oncology targeted next-generation sequencing panel. Experimental and Molecular Pathology. 98: 568-73. PMID 25910966 DOI: 10.1016/J.Yexmp.2015.04.006  0.49
2015 Gomez F, Wang L, Abel H, Zhang Q, Province MA, Borecki IB. Admixture mapping of coronary artery calcification in African Americans from the NHLBI family heart study. Bmc Genetics. 16: 42. PMID 25902833 DOI: 10.1186/S12863-015-0196-X  0.34
2015 Zhang Q, Abel H, Wells A, Lenzini P, Gomez F, Province MA, Templeton AA, Weinstock GM, Salzman NH, Borecki IB. Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data. Bioinformatics (Oxford, England). 31: 1607-13. PMID 25568281 DOI: 10.1093/Bioinformatics/Btu855  0.313
2014 Parker MM, Foreman MG, Abel HJ, Mathias RA, Hetmanski JB, Crapo JD, Silverman EK, Beaty TH. Admixture mapping identifies a quantitative trait locus associated with FEV1/FVC in the COPDGene Study Genetic Epidemiology. 38: 652-659. PMID 25112515 DOI: 10.1002/Gepi.21847  0.324
2014 Sehn JK, Abel HJ, Duncavage EJ. Copy number variants in clinical next-generation sequencing data can define the relationship between simultaneous tumors in an individual patient. Experimental and Molecular Pathology. 97: 69-73. PMID 24886963 DOI: 10.1016/J.Yexmp.2014.05.008  0.465
2014 Abel HJ, Al-Kateb H, Cottrell CE, Bredemeyer AJ, Pritchard CC, Grossmann AH, Wallander ML, Pfeifer JD, Lockwood CM, Duncavage EJ. Detection of gene rearrangements in targeted clinical next-generation sequencing. The Journal of Molecular Diagnostics : Jmd. 16: 405-17. PMID 24813172 DOI: 10.1016/J.Jmoldx.2014.03.006  0.439
2014 Cimino PJ, Robirds DH, Tripp SR, Pfeifer JD, Abel HJ, Duncavage EJ. Retinoblastoma gene mutations detected by whole exome sequencing of Merkel cell carcinoma. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 27: 1073-87. PMID 24406863 DOI: 10.1038/Modpathol.2013.235  0.357
2014 Cottrell CE, Al-Kateb H, Bredemeyer AJ, Duncavage EJ, Spencer DH, Abel HJ, Lockwood CM, Hagemann IS, O'Guin SM, Burcea LC, Sawyer CS, Oschwald DM, Stratman JL, Sher DA, Johnson MR, et al. Validation of a next-generation sequencing assay for clinical molecular oncology. The Journal of Molecular Diagnostics : Jmd. 16: 89-105. PMID 24211365 DOI: 10.1016/J.Jmoldx.2013.10.002  0.49
2013 Abel HJ, Duncavage EJ. Detection of structural DNA variation from next generation sequencing data: a review of informatic approaches. Cancer Genetics. 206: 432-40. PMID 24405614 DOI: 10.1016/J.Cancergen.2013.11.002  0.489
2013 Spencer DH, Sehn JK, Abel HJ, Watson MA, Pfeifer JD, Duncavage EJ. Comparison of clinical targeted next-generation sequence data from formalin-fixed and fresh-frozen tissue specimens. The Journal of Molecular Diagnostics : Jmd. 15: 623-33. PMID 23810758 DOI: 10.1016/j.jmoldx.2013.05.004  0.335
2013 Spencer DH, Abel HJ, Lockwood CM, Payton JE, Szankasi P, Kelley TW, Kulkarni S, Pfeifer JD, Duncavage EJ. Detection of FLT3 internal tandem duplication in targeted, short-read-length, next-generation sequencing data. The Journal of Molecular Diagnostics : Jmd. 15: 81-93. PMID 23159595 DOI: 10.1016/J.Jmoldx.2012.08.001  0.478
2012 Knight S, Abo RP, Abel HJ, Neklason DW, Tuohy TM, Burt RW, Thomas A, Camp NJ. Shared genomic segment analysis: the power to find rare disease variants. Annals of Human Genetics. 76: 500-9. PMID 22989048 DOI: 10.1111/J.1469-1809.2012.00728.X  0.382
2012 Duncavage EJ, Abel HJ, Szankasi P, Kelley TW, Pfeifer JD. Targeted next generation sequencing of clinically significant gene mutations and translocations in leukemia. Modern Pathology : An Official Journal of the United States and Canadian Academy of Pathology, Inc. 25: 795-804. PMID 22425908 DOI: 10.1038/Modpathol.2012.29  0.469
2011 Abel HJ, Thomas A. Case-control association testing by graphical modeling for the Genetic Analysis Workshop 17 mini-exome sequence data. Bmc Proceedings. 5: S62. PMID 22373360 DOI: 10.1186/1753-6561-5-S9-S62  0.391
2011 Thomas A, Abel HJ, Di Y, Faye LL, Jin J, Liu J, Wu Z, Paterson AD. Effect of linkage disequilibrium on the identification of functional variants. Genetic Epidemiology. 35: S115-9. PMID 22128051 DOI: 10.1002/Gepi.20660  0.391
2011 Duncavage EJ, Magrini V, Becker N, Armstrong JR, Demeter RT, Wylie T, Abel HJ, Pfeifer JD. Hybrid capture and next-generation sequencing identify viral integration sites from formalin-fixed, paraffin-embedded tissue. The Journal of Molecular Diagnostics : Jmd. 13: 325-33. PMID 21497292 DOI: 10.1016/j.jmoldx.2011.01.006  0.359
2011 Spencer DH, Abel H, Szankasi P, Kelley TW, Kulkarni S, Watson MA, Pfeifer JD, Duncavage EJ. Detection of FLT3 Internal Tandem Duplications in Acute Myeloid Leukemia by Targeted Multi-Gene Next Generation Sequencing, Blood. 118: 3547-3547. DOI: 10.1182/Blood.V118.21.3547.3547  0.505
2010 Abel HJ, Duncavage EJ, Becker N, Armstrong JR, Magrini VJ, Pfeifer JD. SLOPE: a quick and accurate method for locating non-SNP structural variation from targeted next-generation sequence data. Bioinformatics (Oxford, England). 26: 2684-8. PMID 20876606 DOI: 10.1093/Bioinformatics/Btq528  0.477
2010 Duncavage EJ, Abel H, Armstrong J, South S, Pfeifer JD. Next Generation Sequencing Based Identification of Translocations In Clinical Acute Myeloid Leukemia Specimens Blood. 116: 581-581. DOI: 10.1182/Blood.V116.21.581.581  0.465
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