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Oscar Westesson, Ph.D. - Publications

Affiliations: 
2012 Bioengineering University of California, Berkeley, Berkeley, CA, United States 
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14 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Artieri C, Axelrod H, Baca A, Burke J, Chudova D, Dahdouli M, Ghadiri F, Hartwig A, He Y, Hite D, Jaimovich A, Juntilla M, Kurata J, Kong Y, Nance T, ... ... Westesson O, et al. Analytical validation of a tissue agnostic ctDNA MRD assay using tumor specific methylation and somatic variant profiles in early-stage CRC. Journal of Clinical Oncology. 38: e15549-e15549. DOI: 10.1200/Jco.2020.38.15_Suppl.E15549  0.333
2019 Kim S, Raymond VM, Park JO, Zotenko E, Park YS, Schultz M, Kang WK, Westesson O, Kim H, He Y, Odegaard JI, Mortimer SA, Greenleaf WJ, Jaimovich A, Lee J, et al. Abstract 916: Combined genomic and epigenomic assessment of cell-free circulating tumor DNA (ctDNA) improves assay sensitivity in early-stage colorectal cancer (CRC) Cancer Research. 79: 916-916. DOI: 10.1158/1538-7445.Am2019-916  0.345
2015 Santiago-Ortiz J, Ojala DS, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer DV. AAV ancestral reconstruction library enables selection of broadly infectious viral variants. Gene Therapy. PMID 26186661 DOI: 10.1038/Gt.2015.74  0.552
2015 Westesson O, Nielsen R, John JS, Caulin A, Hahner N, Stewart S, Foo C, Lung K, Catalano J, Lee M, Giannikopoulos P, Polkinghorn W, Wiessman J, Regev A, Bivona T. Abstract 2173: Robust estimation of mutation burden Cancer Research. 75: 2173-2173. DOI: 10.1158/1538-7445.Am2015-2173  0.334
2015 Ojala DS, Santiago-Ortiz J, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer D. 260. AAV Ancestral Reconstruction Library Enables Selection of Broadly Infectious Viral Variants Molecular Therapy. 23. DOI: 10.1016/S1525-0016(16)33869-2  0.585
2014 Foo CK, St. John JA, Westesson O, Hahner NJ, Caulin AF, Skinner ME, Catalano JP, Lung K, Parikh UG, Wellde AS, Barry JK, Wellde GW, Rosell R, Weissman JS, Polkinghorn WR, et al. Clinical validation of a comprehensive cancer genomics analysis for lung cancer patients. Journal of Clinical Oncology. 32: e22122-e22122. DOI: 10.1200/Jco.2014.32.15_Suppl.E22122  0.363
2014 Giannikopoulos P, John JS, Hahner N, Parker JS, Karachaliou N, Costa C, Westesson O, Parikh U, Foo CK, Cauhlin AF, Lozano MD, Viteri S, Perez-Gracia JL, Curioni A, Jantus-Lewintre E, et al. Abstract 954: Integrated genomic analysis by whole exome and transcriptome sequencing of tumor samples from EGFR-mutant non-small-cell lung cancer patients with acquired resistance to erlotinib Cancer Research. 74: 954-954. DOI: 10.1158/1538-7445.Am2014-954  0.333
2014 Foo CK, John JS, Hahner N, Westesson O, Skinner ME, Parikh U, Lung K, Cauhlin AF, Catalano JP, Wellde AS, Barry JK, Wellde GW, Ma P, Rosell R, Zorilla AFC, et al. Abstract 4707: Comprehensive integrated genomic analysis Cancer Research. 74: 4707-4707. DOI: 10.1158/1538-7445.Am2014-4707  0.399
2013 Runckel C, Westesson O, Andino R, DeRisi JL. Identification and manipulation of the molecular determinants influencing poliovirus recombination. Plos Pathogens. 9: e1003164. PMID 23408891 DOI: 10.1371/Journal.Ppat.1003164  0.347
2013 Westesson O, Skinner M, Holmes I. Visualizing next-generation sequencing data with JBrowse. Briefings in Bioinformatics. 14: 172-7. PMID 22411711 DOI: 10.1093/Bib/Bbr078  0.511
2012 Westesson O, Holmes I. Developing and applying heterogeneous phylogenetic models with XRate. Plos One. 7: e36898. PMID 22693624 DOI: 10.1371/Journal.Pone.0036898  0.559
2012 Westesson O, Lunter G, Paten B, Holmes I. Accurate reconstruction of insertion-deletion histories by statistical phylogenetics. Plos One. 7: e34572. PMID 22536326 DOI: 10.1371/Journal.Pone.0034572  0.566
2012 Westesson O, Barquist L, Holmes I. HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction. Bioinformatics (Oxford, England). 28: 1170-1. PMID 22285828 DOI: 10.1093/Bioinformatics/Bts058  0.573
2009 Westesson O, Holmes I. Accurate detection of recombinant breakpoints in whole-genome alignments. Plos Computational Biology. 5: e1000318. PMID 19300487 DOI: 10.1371/Journal.Pcbi.1000318  0.551
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