Yihan Shao, Ph.D. - Publications

Affiliations: 
2016 Chemistry and Biochemistry University of Oklahoma, Norman, Norman, OK, United States 
Area:
Theoretical Chemistry

84 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li P, Liu F, Shao Y, Mei Y. Computational Insights into Endo/Exo Selectivity of Diels--Alder Reaction in Explicit Solvent at ab Initio Quantum Mechanical/Molecular Mechanical Level. The Journal of Physical Chemistry. B. PMID 31140808 DOI: 10.1021/acs.jpcb.9b01989  0.44
2018 Mao Y, Head-Gordon M, Shao Y. Unraveling substituent effects on frontier orbitals of conjugated molecules using an absolutely localized molecular orbital based analysis. Chemical Science. 9: 8598-8607. PMID 30568785 DOI: 10.1039/c8sc02990c  1
2018 Li P, Jia X, Pan X, Shao Y, Mei Y. Accelerated Computation of Free Energy Profile at ab initio QM/MM Accuracy via a Semi-Empirical Reference-Potential. I. Weighted Thermodynamics Perturbation. Journal of Chemical Theory and Computation. PMID 30336015 DOI: 10.1021/acs.jctc.8b00571  0.44
2018 Li P, Liu F, Jia X, Shao Y, Hu W, Zheng J, Mei Y. Efficient Computation of Free Energy Surfaces of Diels⁻Alder Reactions in Explicit Solvent at Ab Initio QM/MM Level. Molecules (Basel, Switzerland). 23. PMID 30274188 DOI: 10.3390/molecules23102487  0.44
2017 Wang M, Li P, Jia X, Liu W, Shao Y, Hu W, Zheng J, Brooks BR, Mei Y. An Efficient Strategy for the Calculation of Solvation Free Energies in Water and Chloroform at the Quantum Mechanical/Molecular Mechanical Level. Journal of Chemical Information and Modeling. PMID 28933850 DOI: 10.1021/acs.jcim.7b00001  0.44
2017 Mao Y, Shao Y, Dziedzic J, Skylaris CK, Head-Gordon T, Head-Gordon M. Performance of the AMOEBA water model in the vicinity of QM solutes: A diagnosis using energy decomposition analysis. Journal of Chemical Theory and Computation. PMID 28430427 DOI: 10.1021/acs.jctc.7b00089  1
2017 Huang J, Mei Y, Koenig G, Simmonett AC, Pickard FC, Wu Q, Wang LP, MacKerell AD, Brooks BR, Shao Y. An Estimation of Hybrid Quantum Mechanical Molecular Mechanical (QM/MM) Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches. Journal of Chemical Theory and Computation. PMID 28081366 DOI: 10.1021/acs.jctc.6b01125  0.44
2016 Dziedzic J, Mao Y, Shao Y, Ponder J, Head-Gordon T, Head-Gordon M, Skylaris CK. TINKTEP: A fully self-consistent, mutually polarizable QM/MM approach based on the AMOEBA force field. The Journal of Chemical Physics. 145: 124106. PMID 27782640 DOI: 10.1063/1.4962909  1
2016 Pickard FC, König G, Simmonett AC, Shao Y, Brooks BR. An efficient protocol for obtaining accurate hydration free energies using quantum chemistry and reweighting from molecular dynamics simulations. Bioorganic & Medicinal Chemistry. PMID 27667551 DOI: 10.1016/j.bmc.2016.08.031  1
2016 Pickard FC, König G, Tofoleanu F, Lee J, Simmonett AC, Shao Y, Ponder JW, Brooks BR. Blind prediction of distribution in the SAMPL5 challenge with QM based protomer and pK a corrections. Journal of Computer-Aided Molecular Design. PMID 27646286 DOI: 10.1007/s10822-016-9955-7  1
2016 König G, Pickard FC, Huang J, Simmonett AC, Tofoleanu F, Lee J, Dral PO, Prasad S, Jones M, Shao Y, Thiel W, Brooks BR. Calculating distribution coefficients based on multi-scale free energy simulations: an evaluation of MM and QM/MM explicit solvent simulations of water-cyclohexane transfer in the SAMPL5 challenge. Journal of Computer-Aided Molecular Design. PMID 27577746 DOI: 10.1007/s10822-016-9936-x  1
2016 Albaugh A, Boateng HA, Bradshaw RT, Demerdash ON, Dziedzic J, Mao Y, Margul DT, Swails JM, Zeng Q, Case DA, Eastman PK, Essex JW, Head-Gordon M, Pande VS, Ponder JW, ... Shao Y, et al. Advanced Potential Energy Surfaces for Molecular Simulation. The Journal of Physical Chemistry. B. PMID 27513316 DOI: 10.1021/acs.jpcb.6b06414  1
2016 Gurunathan PK, Acharya A, Ghosh D, Kosenkov D, Kaliman I, Shao Y, Krylov AI, Slipchenko LV. The Extension of the Effective Fragment Potential Method to Macromolecules. The Journal of Physical Chemistry. B. PMID 27314461 DOI: 10.1021/acs.jpcb.6b04166  1
2016 Guan Y, Ma Y, Li Q, Sun Z, Ma L, Wu L, Wang L, Zeng L, Shao Y, Chen Y, Ma N, Lu W, Hu K, Han H, Yu Y, et al. CRISPR/Cas9-mediated somatic correction of a novel coagulator factor IX gene mutation ameliorates hemophilia in mouse. Embo Molecular Medicine. PMID 26964564 DOI: 10.15252/emmm.201506039  0.48
2016 Qiao Y, Mei Y, Du X, Xie B, Shao Y. Reduced brain activation in violent adolescents during response inhibition. Scientific Reports. 6: 21318. PMID 26888566 DOI: 10.1038/srep21318  0.44
2016 Qin F, Zhang H, Shao Y, Liu X, Yang L, Huang Y, Fu L, Gu F, Ma Y. Expression of aquaporin1, a water channel protein, in cytoplasm is negatively correlated with prognosis of breast cancer patients. Oncotarget. PMID 26812884 DOI: 10.18632/oncotarget.6994  0.48
2016 Jia X, Wang M, Shao Y, König G, Brooks BR, Zhang JZ, Mei Y. Calculations of Solvation Free Energy through Energy Reweighting from Molecular Mechanics to Quantum Mechanics. Journal of Chemical Theory and Computation. PMID 26731197 DOI: 10.1021/acs.jctc.5b00920  1
2016 Xi J, Xia Q, Shao Y, Ding D, Yang P, Liu X, Lu G, Wang Y. Production of hexane from sorbitol in aqueous medium over Pt/NbOPO4 catalyst Applied Catalysis B: Environmental. 181: 699-706. DOI: 10.1016/j.apcatb.2015.08.052  0.36
2015 Liu X, Zhang S, Wang J, Wang J, Shao Y, Zhu L. Biochemical responses and DNA damage in earthworms (Eisenia fetida) induced by ionic liquid [omim]PF6. Environmental Science and Pollution Research International. PMID 26667645 DOI: 10.1007/s11356-015-5827-2  0.36
2015 König G, Mei Y, Pickard FC, Simmonett AC, Miller BT, Herbert JM, Woodcock HL, Brooks BR, Shao Y. Computation of Hydration Free Energies Using the Multiple Environment Single System Quantum Mechanical/Molecular Mechanical (MESS-QM/MM) Method. Journal of Chemical Theory and Computation. PMID 26613419 DOI: 10.1021/acs.jctc.5b00874  1
2015 Closser KD, Ge Q, Mao Y, Shao Y, Head-Gordon M. Superposition of Fragment Excitations for Excited States of Large Clusters with Application to Helium Clusters. Journal of Chemical Theory and Computation. PMID 26609558 DOI: 10.1021/acs.jctc.5b00703  1
2015 Wu T, Yao C, Tsang F, Huang L, Zhang W, Jiang J, Mao Y, Shao Y, Kong B, Singh P, Fu Z. Facilitated physiological adaptation to prolonged circadian disruption through dietary supplementation with essence of chicken. Chronobiology International. 1-11. PMID 26595385 DOI: 10.3109/07420528.2015.1105252  0.44
2015 Zuev D, Jagau TC, Bravaya KB, Epifanovsky E, Shao Y, Sundstrom E, Head-Gordon M, Krylov AI. Erratum: "Complex absorbing potentials within EOM-CC family of methods: Theory, implementation, and benchmarks" [J. Chem. Phys. 141, 024102 (2014)]. The Journal of Chemical Physics. 143: 149901. PMID 26472400 DOI: 10.1063/1.4932100  1
2015 Xie L, Feng H, Li S, Meng G, Liu S, Tang X, Ma Y, Han Y, Xiao Y, Gu Y, Shao Y, Park CM, Xian M, Huang Y, Ferro A, et al. SIRT3 mediates the anti-oxidant effect of hydrogen sulfide in endothelial cells. Antioxidants & Redox Signaling. PMID 26422756 DOI: 10.1089/ars.2015.6331  0.48
2015 Shao Y, Peng H, Huang Q, Kong J, Xu H. Quetiapine mitigates the neuroinflammation and oligodendrocyte loss in the brain of C57BL/6 mouse following cuprizone exposure for one week. European Journal of Pharmacology. 765: 249-257. PMID 26321148 DOI: 10.1016/j.ejphar.2015.08.046  0.64
2015 Wu JJ, Li W, Shao Y, Avey D, Fu B, Gillen J, Hand T, Ma S, Liu X, Miley W, Konrad A, Neipel F, Stürzl M, Whitby D, Li H, et al. Inhibition of cGAS DNA Sensing by a Herpesvirus Virion Protein. Cell Host & Microbe. PMID 26320998 DOI: 10.1016/j.chom.2015.07.015  0.36
2015 Huang M, Shao Y, Hou J, Cai W, Liang B, Huang Y, Li Z, Wu Y, Zhu X, Liu P, Wan Y, Ke H, Luo HB. Structural Asymmetry of Phosphodiesterase-9A and a Unique Pocket for Selective Binding of a Potent Enantiomeric Inhibitor. Molecular Pharmacology. PMID 26316540 DOI: 10.1124/mol.115.099747  0.48
2015 Simmonett AC, Pickard FC, Shao Y, Cheatham TE, Brooks BR. Efficient treatment of induced dipoles. The Journal of Chemical Physics. 143: 074115. PMID 26298123 DOI: 10.1063/1.4928530  1
2015 Guo X, Huang Y, Qi Y, Liu Z, Ma Y, Shao Y, Jiang S, Sun Z, Ruan Q. Human cytomegalovirus miR-UL36-5p inhibits apoptosis via downregulation of adenine nucleotide translocator 3 in cultured cells. Archives of Virology. PMID 26212361 DOI: 10.1007/s00705-015-2498-8  0.48
2015 Mei Y, Simmonett AC, Pickard FC, DiStasio RA, Brooks BR, Shao Y. Numerical study on the partitioning of the molecular polarizability into fluctuating charge and induced atomic dipole contributions. The Journal of Physical Chemistry. A. 119: 5865-82. PMID 25945749 DOI: 10.1021/acs.jpca.5b03159  1
2015 Sodt AJ, Mei Y, König G, Tao P, Steele RP, Brooks BR, Shao Y. Multiple environment single system quantum mechanical/molecular mechanical (MESS-QM/MM) calculations. 1. Estimation of polarization energies. The Journal of Physical Chemistry. A. 119: 1511-23. PMID 25321186 DOI: 10.1021/jp5072296  1
2015 Shao Y, Gan Z, Epifanovsky E, Gilbert ATB, Wormit M, Kussmann J, Lange AW, Behn A, Deng J, Feng X, Ghosh D, Goldey M, Horn PR, Jacobson LD, Kaliman I, et al. Advances in molecular quantum chemistry contained in the Q-Chem 4 program package Molecular Physics. 113: 184-215. DOI: 10.1080/00268976.2014.952696  1
2015 Zhao SF, Shao Y, Liu X, Chen N, Ding HY, Yao KF. Pseudo-quinary Ti20Zr20Hf20Be20(Cu20-xNix) high entropy bulk metallic glasses with large glass forming ability Materials and Design. 87: 625-631. DOI: 10.1016/j.matdes.2015.08.067  0.36
2014 Tao P, Sodt AJ, Shao Y, König G, Brooks BR. Computing the Free Energy along a Reaction Coordinate Using Rigid Body Dynamics. Journal of Chemical Theory and Computation. 10: 4198-4207. PMID 25328492 DOI: 10.1021/ct500342h  1
2014 Ou Q, Fatehi S, Alguire E, Shao Y, Subotnik JE. Derivative couplings between TDDFT excited states obtained by direct differentiation in the Tamm-Dancoff approximation. The Journal of Chemical Physics. 141: 024114. PMID 25028006 DOI: 10.1063/1.4887256  1
2014 Zuev D, Jagau TC, Bravaya KB, Epifanovsky E, Shao Y, Sundstrom E, Head-Gordon M, Krylov AI. Complex absorbing potentials within EOM-CC family of methods: theory, implementation, and benchmarks. The Journal of Chemical Physics. 141: 024102. PMID 25027994 DOI: 10.1063/1.4885056  1
2014 Alguire EC, Fatehi S, Shao Y, Subotnik JE. Analysis of localized diabatic states beyond the condon approximation for excitation energy transfer processes. The Journal of Physical Chemistry. A. 118: 11891-900. PMID 24447246 DOI: 10.1021/jp411107k  1
2014 Goldey M, DiStasio RA, Shao Y, Head-Gordon M. Shared memory multiprocessing implementation of resolution-of-the-identity second-order Møller-Plesset perturbation theory with attenuated and unattenuated results for intermolecular interactions between large molecules Molecular Physics. 112: 836-843. DOI: 10.1080/00268976.2013.869363  1
2013 Epifanovsky E, Zuev D, Feng X, Khistyaev K, Shao Y, Krylov AI. General implementation of the resolution-of-the-identity and Cholesky representations of electron repulsion integrals within coupled-cluster and equation-of-motion methods: theory and benchmarks. The Journal of Chemical Physics. 139: 134105. PMID 24116550 DOI: 10.1063/1.4820484  1
2013 Huang Y, Shao Y, Beran GJ. Accelerating MP2C dispersion corrections for dimers and molecular crystals. The Journal of Chemical Physics. 138: 224112. PMID 23781788 DOI: 10.1063/1.4809981  1
2013 Back S, Schmidt JA, Ji H, Heo J, Shao Y, Jung Y. On the structure of Si(100) surface: importance of higher order correlations for buckled dimer. The Journal of Chemical Physics. 138: 204709. PMID 23742502 DOI: 10.1063/1.4807334  1
2013 Ji H, Shao Y, Goddard WA, Jung Y. Analytic Derivatives of Quartic-Scaling Doubly Hybrid XYGJ-OS Functional: Theory, Implementation, and Benchmark Comparison with M06-2X and MP2 Geometries for Nonbonded Compelexes. Journal of Chemical Theory and Computation. 9: 1971-1976. PMID 23671408 DOI: 10.1021/ct400050d  1
2013 Ghosh D, Kosenkov D, Vanovschi V, Flick J, Kaliman I, Shao Y, Gilbert AT, Krylov AI, Slipchenko LV. Effective fragment potential method in Q-CHEM: a guide for users and developers. Journal of Computational Chemistry. 34: 1060-70. PMID 23319180 DOI: 10.1002/jcc.23223  1
2012 Tao P, Hodoš?ek M, Larkin JD, Shao Y, Brooks BR. Comparison of Three Chain-of-States Methods: Nudged Elastic Band and Replica Path with Restraints or Constraints. Journal of Chemical Theory and Computation. 8: 5035-5051. PMID 23526888 DOI: 10.1021/ct3006248  1
2012 Zhang S, Qu Z, Tao P, Brooks B, Shao Y, Chen X, Liu C. A Quantum Chemical Study of the Ground and Excited State Electronic Structures of Carbazole Oligomers with and without Triarylborane Substitutes. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 116: 12434-12442. PMID 22754601 DOI: 10.1021/jp3027447  1
2012 Bernard YA, Shao Y, Krylov AI. General formulation of spin-flip time-dependent density functional theory using non-collinear kernels: theory, implementation, and benchmarks. The Journal of Chemical Physics. 136: 204103. PMID 22667536 DOI: 10.1063/1.4714499  1
2012 Liu X, Fatehi S, Shao Y, Veldkamp BS, Subotnik JE. Communication: Adjusting charge transfer state energies for configuration interaction singles: without any parameterization and with minimal cost. The Journal of Chemical Physics. 136: 161101. PMID 22559462 DOI: 10.1063/1.4705757  1
2012 Chang CM, Shao Y, Kong J. Ewald mesh method for quantum mechanical calculations. The Journal of Chemical Physics. 136: 114112. PMID 22443753 DOI: 10.1063/1.3694829  1
2012 Proynov E, Liu F, Shao Y, Kong J. Improved self-consistent and resolution-of-identity approximated Becke'05 density functional model of nondynamic electron correlation. The Journal of Chemical Physics. 136: 034102. PMID 22280739 DOI: 10.1063/1.3676726  1
2011 Ghysels A, Woodcock HL, Larkin JD, Miller BT, Shao Y, Kong J, Neck DV, Speybroeck VV, Waroquier M, Brooks BR. Efficient Calculation of QM/MM Frequencies with the Mobile Block Hessian. Journal of Chemical Theory and Computation. 7: 496-514. PMID 26596169 DOI: 10.1021/ct100473f  0.64
2011 Fatehi S, Alguire E, Shao Y, Subotnik JE. Analytic derivative couplings between configuration-interaction-singles states with built-in electron-translation factors for translational invariance. The Journal of Chemical Physics. 135: 234105. PMID 22191862 DOI: 10.1063/1.3665031  1
2011 Ghysels A, Woodcock HL, Larkin JD, Miller BT, Shao Y, Kong J, Neck DV, Speybroeck VV, Waroquier M, Brooks BR. Efficient calculation of QM/MM frequencies with the mobile Block Hessian Journal of Chemical Theory and Computation. 7: 496-514. DOI: 10.1021/ct100473f  1
2010 Olivares-Amaya R, Watson MA, Edgar RG, Vogt L, Shao Y, Aspuru-Guzik A. Accelerating Correlated Quantum Chemistry Calculations Using Graphical Processing Units and a Mixed Precision Matrix Multiplication Library. Journal of Chemical Theory and Computation. 6: 135-44. PMID 26614326 DOI: 10.1021/ct900543q  1
2010 Proynov E, Shao Y, Kong J. Efficient self-consistent DFT calculation of nondynamic correlation based on the B05 method. Chemical Physics Letters. 493: 381-385. PMID 20640046 DOI: 10.1016/j.cplett.2010.05.029  1
2010 Liu F, Gan Z, Shao Y, Hsu CP, Dreuw A, Head-Gordon M, Miller BT, Brooks BR, Yu JG, Furlani TR, Kong J. A parallel implementation of the analytic nuclear gradient for time-dependent density functional theory within the Tamm-Dancoff approximation Molecular Physics. 108: 2791-2800. DOI: 10.1080/00268976.2010.526642  1
2008 Woodcock HL, Zheng W, Ghysels A, Shao Y, Kong J, Brooks BR. Vibrational subsystem analysis: A method for probing free energies and correlations in the harmonic limit. The Journal of Chemical Physics. 129: 214109. PMID 19063546 DOI: 10.1063/1.3013558  1
2008 Vogt L, Olivares-Amaya R, Kermes S, Shao Y, Amador-Bedolla C, Aspuru-Guzik A. Accelerating resolution-of-the-identity second-order Møller-Plesset quantum chemistry calculations with graphical processing units. The Journal of Physical Chemistry. A. 112: 2049-57. PMID 18229900 DOI: 10.1021/jp0776762  1
2008 Freindorf M, Shao Y, Kong J, Furlani TR. Combined QM/MM calculations of active-site vibrations in binding process of P450cam to putidaredoxin. Journal of Inorganic Biochemistry. 102: 427-32. PMID 18180042 DOI: 10.1016/j.jinorgbio.2007.11.006  1
2007 Lochan RC, Shao Y, Head-Gordon M. Quartic-Scaling Analytical Energy Gradient of Scaled Opposite-Spin Second-Order Møller-Plesset Perturbation Theory. Journal of Chemical Theory and Computation. 3: 988-1003. PMID 26627418 DOI: 10.1021/ct600292h  1
2007 Jung Y, Shao Y, Head-Gordon M. Fast evaluation of scaled opposite spin second-order Møller-Plesset correlation energies using auxiliary basis expansions and exploiting sparsity. Journal of Computational Chemistry. 28: 1953-64. PMID 17447248 DOI: 10.1002/jcc.20590  1
2007 Shao Y, Kong J. YinYang atom: a simple combined ab initio quantum mechanical molecular mechanical model. The Journal of Physical Chemistry. A. 111: 3661-71. PMID 17429951 DOI: 10.1021/jp067307q  1
2007 Distasio RA, Steele RP, Rhee YM, Shao Y, Head-Gordon M. An improved algorithm for analytical gradient evaluation in resolution-of-the-identity second-order Møller-Plesset perturbation theory: application to alanine tetrapeptide conformational analysis. Journal of Computational Chemistry. 28: 839-56. PMID 17219361 DOI: 10.1002/jcc.20604  1
2007 Freindorf M, Jones MD, Shao Y, Kong J, Furlani TR. Large-scale QM/MM calculations of electronic excitations in yellow protein: Toward petascale level of protein calculations Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 614-619. DOI: 10.1109/BIBE.2007.4375624  1
2006 Steele RP, Shao Y, DiStasio RA, Head-Gordon M. Dual-basis analytic gradients. 1. Self-consistent field theory. The Journal of Physical Chemistry. A. 110: 13915-22. PMID 17181351 DOI: 10.1021/jp065444h  1
2006 Steele RP, DiStasio RA, Shao Y, Kong J, Head-Gordon M. Dual-basis second-order Moller-Plesset perturbation theory: A reduced-cost reference for correlation calculations. The Journal of Chemical Physics. 125: 074108. PMID 16942323 DOI: 10.1063/1.2234371  1
2006 Shao Y, Molnar LF, Jung Y, Kussmann J, Ochsenfeld C, Brown ST, Gilbert AT, Slipchenko LV, Levchenko SV, O'Neill DP, DiStasio RA, Lochan RC, Wang T, Beran GJ, Besley NA, et al. Advances in methods and algorithms in a modern quantum chemistry program package. Physical Chemistry Chemical Physics : Pccp. 8: 3172-91. PMID 16902710 DOI: 10.1039/b517914a  1
2006 Freindorf M, Shao Y, Brown ST, Kong J, Furlani TR. A combined density functional theory and molecular mechanics (QM/MM) study of FeCO vibrations in carbonmonoxy myoglobin Chemical Physics Letters. 419: 563-566. DOI: 10.1016/j.cplett.2005.11.111  1
2006 Kong J, Brown ST, Fusti-Monlar L, Shao Y. Fast density-functional-theory calculation with Q-Chem program 2006 Nsti Nanotechnology Conference and Trade Show - Nsti Nanotech 2006 Technical Proceedings. 2: 317-320.  1
2005 Freindorf M, Shao Y, Furlani TR, Kong J. Lennard-Jones parameters for the combined QM/MM method using the B3LYP/6-31G*/AMBER potential. Journal of Computational Chemistry. 26: 1270-8. PMID 15965971 DOI: 10.1002/jcc.20264  1
2005 Maslen PE, Dutoi AD, Lee MS, Shao Y, Head-Gordon M. Accurate local approximations to the triples correlation energy: Formulation, implementation and tests of 5th-order scaling models Molecular Physics. 103: 425-437. DOI: 10.1080/00268970412331319227  1
2004 Subotnik JE, Shao Y, Liang W, Head-Gordon M. An efficient method for calculating maxima of homogeneous functions of orthogonal matrices: applications to localized occupied orbitals. The Journal of Chemical Physics. 121: 9220-9. PMID 15538842 DOI: 10.1063/1.1790971  1
2004 Cristian AMC, Shao Y, Krylov AI. Bonding patterns in benzene triradicals from structural, spectroscopic, and thermochemical perspectives Journal of Physical Chemistry A. 108: 6581-6588. DOI: 10.1021/jp049007j  1
2004 Liang W, Baer R, Saravanan C, Shao Y, Bell AT, Head-Gordon M. Fast methods for resumming matrix polynomials and Chebyshev matrix polynomials Journal of Computational Physics. 194: 575-587. DOI: 10.1016/j.jcp.2003.08.027  1
2004 You ZQ, Shao Y, Hsu CP. Calculating electron transfer couplings by the Spin-Flip approach: Energy splitting and dynamical correlation effects Chemical Physics Letters. 390: 116-123. DOI: 10.1016/j.cplett.2004.03.142  1
2003 Saravanan C, Shao Y, Baer R, Ross PN, Head-Gordon M. Sparse matrix multiplications for linear scaling electronic structure calculations in an atom-centered basis set using multiatom blocks. Journal of Computational Chemistry. 24: 618-22. PMID 12632476 DOI: 10.1002/jcc.10224  1
2003 Jung Y, Shao Y, Gordon MS, Doren DJ, Head-Gordon M. Are both symmetric and buckled dimers on Si(100) minima? Density functional and multireference perturbation theory calculations Journal of Chemical Physics. 119: 10917-10923. DOI: 10.1063/1.1620994  1
2003 Liang WZ, Saravanan C, Shao Y, Baer R, Bell AT, Head-Gordon M. Improved Fermi operator expansion methods for fast electronic structure calculations Journal of Chemical Physics. 119: 4117-4125. DOI: 10.1063/1.1590632  1
2003 Shao Y, Saravanan C, Head-Gordon M, White CA. Curvy steps for density matrix-based energy minimization: Application to large-scale self-consistent-field calculations Journal of Chemical Physics. 118: 6144-6151. DOI: 10.1063/1.1558476  1
2003 Shao Y, Head-Gordon M, Krylov AI. The spin-flip approach within time-dependent density functional theory: Theory and applications to diradicals Journal of Chemical Physics. 118: 4807-4818. DOI: 10.1063/1.1545679  1
2003 Head-Gordon M, Shao Y, Saravanan C, White CA. Curvy steps for density matrix based energy minimization: Tensor formulation and toy applications Molecular Physics. 101: 37-43.  1
2002 Liang W, Shao Y, Ochsenfeld C, Bell AT, Head-Gordon M. Fast evaluation of a linear number of local exchange matrices Chemical Physics Letters. 358: 43-50. DOI: 10.1016/S0009-2614(02)00559-6  1
2001 Shao Y, White CA, Head-Gordon M. Efficient evaluation of the Coulomb force in density-functional theory calculations Journal of Chemical Physics. 114: 6572-6577. DOI: 10.1063/1.1357441  1
2000 Kong J, White CA, Krylov AI, Sherrill D, Adamson RD, Furlani TR, Lee MS, Lee AM, Gwaltney SR, Adams TR, Ochsenfeld C, Gilbert ATB, Kedziora GS, Rassolov VA, Maurice DR, ... ... Shao Y, et al. Q-Chem 2.0: A High-Performance Ab Initio Electronic Structure Program Package Journal of Computational Chemistry. 21: 1532-1548.  1
2000 Shao Y, Head-Gordon M. An improved J matrix engine for density functional theory calculations Chemical Physics Letters. 323: 425-433.  1
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