Jikui Song, Ph.D. - Publications

Affiliations: 
2002 University of Wisconsin, Madison, Madison, WI 
Area:
NMR spectroscopy and its biological applications

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lu J, Fang J, Zhu H, Liang KL, Khudaverdyan N, Song J. Structural basis for the allosteric regulation and dynamic assembly of DNMT3B. Nucleic Acids Research. PMID 37941146 DOI: 10.1093/nar/gkad972  0.558
2023 Chen J, Lu J, Liu J, Fang J, Zhong X, Song J. DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2. The Journal of Biological Chemistry. 105433. PMID 37926286 DOI: 10.1016/j.jbc.2023.105433  0.721
2022 Tajima S, Suetake I, Takeshita K, Nakagawa A, Kimura H, Song J. Domain Structure of the Dnmt1, Dnmt3a, and Dnmt3b DNA Methyltransferases. Advances in Experimental Medicine and Biology. 1389: 45-68. PMID 36350506 DOI: 10.1007/978-3-031-11454-0_3  0.311
2022 Gao L, Guo Y, Biswal M, Lu J, Yin J, Fang J, Chen X, Shao Z, Huang M, Wang Y, Wang GG, Song J. Structure of DNMT3B homo-oligomer reveals vulnerability to impairment by ICF mutations. Nature Communications. 13: 4249. PMID 35869095 DOI: 10.1038/s41467-022-31933-w  0.521
2022 Fang J, Jiang J, Leichter SM, Liu J, Biswal M, Khudaverdyan N, Zhong X, Song J. Mechanistic basis for maintenance of CHG DNA methylation in plants. Nature Communications. 13: 3877. PMID 35790763 DOI: 10.1038/s41467-022-31627-3  0.71
2021 Fang J, Leichter SM, Jiang J, Biswal M, Lu J, Zhang ZM, Ren W, Zhai J, Cui Q, Zhong X, Song J. Substrate deformation regulates DRM2-mediated DNA methylation in plants. Science Advances. 7. PMID 34078593 DOI: 10.1126/sciadv.abd9224  0.718
2021 Biswal M, Diggs S, Xu D, Khudaverdyan N, Lu J, Fang J, Blaha G, Hai R, Song J. Two conserved oligomer interfaces of NSP7 and NSP8 underpin the dynamic assembly of SARS-CoV-2 RdRP. Nucleic Acids Research. PMID 33999154 DOI: 10.1093/nar/gkab370  0.488
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, ... ... Song J, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4  0.475
2021 Jiang J, Liu J, Sanders D, Qian S, Ren W, Song J, Liu F, Zhong X. UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis. Nature Plants. PMID 33495557 DOI: 10.1038/s41477-020-00843-4  0.652
2020 Wang B, Thurmond S, Zhou K, Sánchez-Aparicio MT, Fang J, Lu J, Gao L, Ren W, Cui Y, Veit EC, Hong H, Evans MJ, O'Leary SE, García-Sastre A, Zhou ZH, ... ... Song J, et al. Structural basis for STAT2 suppression by flavivirus NS5. Nature Structural & Molecular Biology. PMID 32778820 DOI: 10.1038/S41594-020-0472-Y  0.547
2020 Adam S, Anteneh H, Hornisch M, Wagner V, Lu J, Radde NE, Bashtrykov P, Song J, Jeltsch A. DNA sequence-dependent activity and base flipping mechanisms of DNMT1 regulate genome-wide DNA methylation. Nature Communications. 11: 3723. PMID 32709850 DOI: 10.1038/S41467-020-17531-8  0.397
2020 Ren W, Fan H, Grimm SA, Guo Y, Kim JJ, Yin J, Li L, Petell CJ, Tan XF, Zhang ZM, Coan JP, Gao L, Cai L, Detrick B, Çetin B, ... ... Song J, et al. Direct readout of heterochromatic H3K9me3 regulates DNMT1-mediated maintenance DNA methylation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32675241 DOI: 10.1073/Pnas.2009316117  0.492
2020 Gao L, Emperle M, Guo Y, Grimm SA, Ren W, Adam S, Uryu H, Zhang ZM, Chen D, Yin J, Dukatz M, Anteneh H, Jurkowska RZ, Lu J, Wang Y, ... ... Song J, et al. Comprehensive structure-function characterization of DNMT3B and DNMT3A reveals distinctive de novo DNA methylation mechanisms. Nature Communications. 11: 3355. PMID 32620778 DOI: 10.1038/S41467-020-17109-4  0.416
2020 Anteneh H, Fang J, Song J. Structural basis for impairment of DNA methylation by the DNMT3A R882H mutation. Nature Communications. 11: 2294. PMID 32385248 DOI: 10.1038/S41467-020-16213-9  0.561
2019 Dong X, Gao L, Song J, Wang Y. Chemical Proteomic Profiling of Lysophosphatidic Acid-binding Proteins. Analytical Chemistry. PMID 31765128 DOI: 10.1021/Acs.Analchem.9B04850  0.312
2019 Wang L, Lee JY, Gao L, Yin J, Duan Y, Jimenez LA, Adkins GB, Ren W, Li L, Fang J, Wang Y, Song J, Zhong W. A DNA aptamer for binding and inhibition of DNA methyltransferase 1. Nucleic Acids Research. PMID 31733056 DOI: 10.1093/Nar/Gkz1083  0.562
2019 Gao L, Anteneh H, Song J. Dissect the DNMT3A- and DNMT3B-mediated DNA co-methylation through a covalent complex approach. Journal of Molecular Biology. PMID 31726062 DOI: 10.1016/J.Jmb.2019.11.004  0.393
2019 Ren W, Lu J, Huang M, Gao L, Li D, Greg Wang G, Song J. Structure and regulation of ZCCHC4 in mA-methylation of 28S rRNA. Nature Communications. 10: 5042. PMID 31695039 DOI: 10.1038/S41467-019-12923-X  0.406
2019 Pfeifer GP, Szabó PE, Song J. Protein Interactions at Oxidized 5-Methylcytosine Bases. Journal of Molecular Biology. PMID 31401118 DOI: 10.1016/J.Jmb.2019.07.039  0.348
2019 Wang B, Song J. Structural basis for the ORC1-Cyclin A association. Protein Science : a Publication of the Protein Society. PMID 31309634 DOI: 10.1002/Pro.3689  0.361
2018 Ren W, Gao L, Song J. Structural Basis of DNMT1 and DNMT3A-Mediated DNA Methylation. Genes. 9. PMID 30544982 DOI: 10.3390/Genes9120620  0.436
2018 Gambini L, Salem AF, Udompholkul P, Tan XF, Baggio C, Shah N, Aronson A, Song J, Pellecchia M. Structure-based design of novel EphA2 agonistic agents with nanomolar affinity in vitro and in cell. Acs Chemical Biology. PMID 30110533 DOI: 10.1021/Acschembio.8B00556  0.306
2018 Wang B, Thurmond S, Hai R, Song J. Structure and function of Zika virus NS5 protein: perspectives for drug design. Cellular and Molecular Life Sciences : Cmls. PMID 29423529 DOI: 10.1007/S00018-018-2751-X  0.331
2018 Zhang ZM, Lu R, Wang P, Yu Y, Chen D, Gao L, Liu S, Ji D, Rothbart SB, Wang Y, Wang GG, Song J. Structural basis for DNMT3A-mediated de novo DNA methylation. Nature. PMID 29414941 DOI: 10.1038/Nature25477  0.436
2018 Gao L, Tan XF, Zhang S, Wu T, Zhang ZM, Ai HW, Song J. An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association. Structure (London, England : 1993). PMID 29395786 DOI: 10.1016/J.Str.2017.12.016  0.469
2017 Zhang ZM, Ma KW, Gao L, Hu Z, Schwizer S, Ma W, Song J. Mechanism of host substrate acetylation by a YopJ family effector. Nature Plants. 3: 17115. PMID 28737762 DOI: 10.1038/Nplants.2017.115  0.368
2017 Wang B, Tan XF, Thurmond S, Zhang ZM, Lin A, Hai R, Song J. The structure of Zika virus NS5 reveals a conserved domain conformation. Nature Communications. 8: 14763. PMID 28345600 DOI: 10.1038/Ncomms14763  0.357
2016 Zhang ZM, Ma KW, Yuan S, Luo Y, Jiang S, Hawara E, Pan S, Ma W, Song J. Structure of a pathogen effector reveals the enzymatic mechanism of a novel acetyltransferase family. Nature Structural & Molecular Biology. PMID 27525589 DOI: 10.1038/Nsmb.3279  0.399
2016 Harter MR, Liu CD, Shen CL, Gonzalez-Hurtado E, Zhang ZM, Xu M, Martinez E, Peng CW, Song J. BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2. Plos Pathogens. 12: e1005414. PMID 26845565 DOI: 10.1371/Journal.Ppat.1005414  0.358
2016 Jin SG, Zhang ZM, Dunwell TL, Harter MR, Wu X, Johnson J, Li Z, Liu J, Szabó PE, Lu Q, Xu GL, Song J, Pfeifer GP. Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration. Cell Reports. PMID 26774490 DOI: 10.1016/J.Celrep.2015.12.044  0.386
2016 Zhang Z, Rothbart SB, Allison DF, Harrison JS, Wang Y, Strahl BD, Wang GG, Song J. Allosteric Regulation of UHRF1 for DNA Methylation Maintenance Biophysical Journal. 110: 513a. DOI: 10.1016/J.Bpj.2015.11.2742  0.445
2015 Zhang C, Brown MQ, van de Ven W, Zhang ZM, Wu B, Young MC, Synek L, Borchardt D, Harrison R, Pan S, Luo N, Huang YM, Ghang YJ, Ung N, Li R, ... ... Song J, et al. Endosidin2 targets conserved exocyst complex subunit EXO70 to inhibit exocytosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26607451 DOI: 10.1073/Pnas.1521248112  0.338
2015 Zhang ZM, Rothbart SB, Allison DF, Cai Q, Harrison JS, Li L, Wang Y, Strahl BD, Wang GG, Song J. An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1. Cell Reports. 12: 1400-6. PMID 26299963 DOI: 10.1016/J.Celrep.2015.07.046  0.386
2015 Ma KW, Jiang S, Hawara E, Lee D, Pan S, Coaker G, Song J, Ma W. Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co-factor. The New Phytologist. PMID 26103463 DOI: 10.1111/Nph.13528  0.339
2015 Zhang ZM, Liu S, Lin K, Luo Y, Perry JJ, Wang Y, Song J. Crystal Structure of Human DNA Methyltransferase 1. Journal of Molecular Biology. PMID 26070743 DOI: 10.1016/J.Jmb.2015.06.001  0.443
2015 Zhang W, Sankaran S, Gozani O, Song J. A Meier-Gorlin syndrome mutation impairs the ORC1-nucleosome association. Acs Chemical Biology. 10: 1176-80. PMID 25689043 DOI: 10.1021/Cb5009684  0.354
2014 Zhang F, Paramasivam M, Cai Q, Dai X, Wang P, Lin K, Song J, Seidman MM, Wang Y. Arsenite binds to the RING finger domains of RNF20-RNF40 histone E3 ubiquitin ligase and inhibits DNA double-strand break repair. Journal of the American Chemical Society. 136: 12884-7. PMID 25170678 DOI: 10.1021/Ja507863D  0.38
2014 Ji D, Lin K, Song J, Wang Y. Effects of Tet-induced oxidation products of 5-methylcytosine on Dnmt1- and DNMT3a-mediated cytosine methylation. Molecular Biosystems. 10: 1749-52. PMID 24789765 DOI: 10.1039/C4Mb00150H  0.317
2013 Jiang S, Yao J, Ma KW, Zhou H, Song J, He SY, Ma W. Bacterial effector activates jasmonate signaling by directly targeting JAZ transcriptional repressors. Plos Pathogens. 9: e1003715. PMID 24204266 DOI: 10.1371/Journal.Ppat.1003715  0.307
2013 Cai L, Rothbart SB, Lu R, Xu B, Chen WY, Tripathy A, Rockowitz S, Zheng D, Patel DJ, Allis CD, Strahl BD, Song J, Wang GG. An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting. Molecular Cell. 49: 571-82. PMID 23273982 DOI: 10.1016/J.Molcel.2012.11.026  0.511
2013 Song J, Patel D. The solution structure of human PHF1 in complex with H3K36me3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M0O/Pdb  0.47
2012 Kuo AJ, Song J, Cheung P, Ishibe-Murakami S, Yamazoe S, Chen JK, Patel DJ, Gozani O. The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature. 484: 115-9. PMID 22398447 DOI: 10.1038/Nature10956  0.572
2012 Song J, Teplova M, Ishibe-Murakami S, Patel DJ. Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation. Science (New York, N.Y.). 335: 709-12. PMID 22323818 DOI: 10.1126/Science.1214453  0.559
2011 Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/J.Str.2011.05.002  0.511
2011 Song J, Rechkoblit O, Bestor TH, Patel DJ. Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science (New York, N.Y.). 331: 1036-40. PMID 21163962 DOI: 10.1126/Science.1195380  0.561
2010 Teplova M, Song J, Gaw HY, Teplov A, Patel DJ. Structural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1. Structure (London, England : 1993). 18: 1364-77. PMID 20947024 DOI: 10.1016/J.Str.2010.06.018  0.485
2010 Qasim MA, Song J, Markley JL, Laskowski M. Cleavage of peptide bonds bearing ionizable amino acids at P(1) by serine proteases with hydrophobic S(1) pocket. Biochemical and Biophysical Research Communications. 400: 507-10. PMID 20800580 DOI: 10.1016/J.Bbrc.2010.08.078  0.442
2010 Wang Z, Song J, Milne TA, Wang GG, Li H, Allis CD, Patel DJ. Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell. 141: 1183-94. PMID 20541251 DOI: 10.1016/J.Cell.2010.05.016  0.523
2009 Wang GG, Song J, Wang Z, Dormann HL, Casadio F, Li H, Luo JL, Patel DJ, Allis CD. Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature. 459: 847-51. PMID 19430464 DOI: 10.1038/Nature08036  0.501
2009 Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN, Volkman BF. Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds. Proteins. 76: 237-43. PMID 19326460 DOI: 10.1002/Prot.22396  0.372
2009 Song J, Wang Z, Patel D. Solution structure of JARID1A C-terminal PHD finger in complex with H3(1-9)K4me3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kgi/Pdb  0.477
2008 Song J, McGivern JV, Nichols KW, Markley JL, Sheets MD. Structural basis for RNA recognition by a type II poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 105: 15317-22. PMID 18824697 DOI: 10.1073/Pnas.0801274105  0.512
2008 Song J, Bettendorff L, Tonelli M, Markley JL. Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase. The Journal of Biological Chemistry. 283: 10939-48. PMID 18276586 DOI: 10.1074/Jbc.M709675200  0.518
2008 Song J, Guo LW, Muradov H, Artemyev NO, Ruoho AE, Markley JL. Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure. Proceedings of the National Academy of Sciences of the United States of America. 105: 1505-10. PMID 18230733 DOI: 10.1073/Pnas.0709558105  0.495
2007 Frederick RO, Bergeman L, Blommel PG, Bailey LJ, McCoy JG, Song J, Meske L, Bingman CA, Riters M, Dillon NA, Kunert J, Yoon JW, Lim A, Cassidy M, Bunge J, et al. Small-scale, semi-automated purification of eukaryotic proteins for structure determination. Journal of Structural and Functional Genomics. 8: 153-66. PMID 17985212 DOI: 10.1007/S10969-007-9032-5  0.484
2007 Phillips GN, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN. Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics. Journal of Structural and Functional Genomics. 8: 73-84. PMID 17786587 DOI: 10.1007/S10969-007-9023-6  0.506
2007 Song J, Zhao KQ, Newman CL, Vinarov DA, Markley JL. Solution structure of human sorting nexin 22. Protein Science : a Publication of the Protein Society. 16: 807-14. PMID 17400918 DOI: 10.1110/Ps.072752407  0.533
2007 Song J, Markley JL. Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner. Protein and Peptide Letters. 14: 265-8. PMID 17346231 DOI: 10.2174/092986607780090801  0.468
2007 Song J, Markley JL. Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold. Journal of Molecular Biology. 366: 155-64. PMID 17166513 DOI: 10.1016/J.Jmb.2006.11.024  0.506
2007 Song J, Vinarov D, Tyler E, Shahan M, Newman CL, Tyler R, Lee M, Markley J. Chemical shift Assignment for mouse Roadblock/LC7 domain BC029172 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6396  0.479
2007 Song J, Guo L, Ruoho A, Markley J. The chemical shift assignment of gamma subunit of phosphodiesterase Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15430  0.44
2006 Song J, Lee MS, Carlberg I, Vener AV, Markley JL. Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications. Biochemistry. 45: 15633-43. PMID 17176085 DOI: 10.1021/Bi062148M  0.517
2006 Lin IJ, Chen Y, Fee JA, Song J, Westler WM, Markley JL. Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential. Journal of the American Chemical Society. 128: 10672-3. PMID 16910649 DOI: 10.1021/Ja0627388  0.621
2006 Tyler R, Song J, Markley J. Dr13312 chemical shift data Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr7084  0.415
2006 Song J, Tyler R, Newman CL, Vinarov D, Markley J. Chemical Shift Assignment of human allograft inflammatory factor I Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6980  0.418
2006 Song J, Markley J. NMR structure of the mouse thiamine triphosphatase Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15063  0.493
2005 Song J, Tyler RC, Lee MS, Tyler EM, Markley JL. Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex. Journal of Molecular Biology. 354: 1043-51. PMID 16289575 DOI: 10.1016/J.Jmb.2005.10.017  0.514
2005 Song J, Zhao Q, Lee MS, Markley JL. 1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana. Journal of Biomolecular Nmr. 32: 335. PMID 16211487 DOI: 10.1007/S10858-005-8205-4  0.55
2005 Zhao Q, Song J, Jin Z, Danilova V, Hellekant G, Markley JL. Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts. Biochemical and Biophysical Research Communications. 335: 256-63. PMID 16105551 DOI: 10.1016/J.Bbrc.2005.07.049  0.605
2005 Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, ... ... Song J, et al. X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. Proteins. 61: 206-8. PMID 16080145 DOI: 10.1002/Prot.20533  0.539
2005 Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS, Peterson FC, Phillips GN, Shahan MN, Singh S, Song J, Sreenath HK, et al. Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies. Proteins. 59: 633-43. PMID 15789406 DOI: 10.1002/Prot.20436  0.594
2005 Song J, Tyler RC, Wrobel RL, Frederick RO, Vojtek FC, Jeon WB, Lee MS, Markley JL. Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein. Protein Science : a Publication of the Protein Society. 14: 1059-63. PMID 15741346 DOI: 10.1110/Ps.041246805  0.525
2005 Song J, Carlberg I, Lee M, Markley J. Chemical Shift Assignments of Thylakoid Soluble Phosphoprotein of 9 kDa Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6926  0.443
2005 Song J, Markley J. chemical shift assignments of the human sorting nexin 22 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6866  0.435
2005 Song J, Markley J. Chemical shift assignments of the human ortholog of tRNA endonuclease subunt SEN15 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6860  0.446
2005 song j, Zhao Q, Jeon WB, Markley J. Resonance assignment of the At1g24000.1 protein from Arabidopsis Thaliana Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6585  0.553
2004 Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL. Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold. Journal of Biomolecular Nmr. 30: 215-8. PMID 15702529 DOI: 10.2210/Pdb1T0G/Pdb  0.444
2004 Song J, Zhao Q, Thao S, Frederick RO, Markley JL. Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana. Journal of Biomolecular Nmr. 30: 451-6. PMID 15630565 DOI: 10.13018/Bmr6209  0.577
2003 Song J, Laskowski M, Qasim MA, Markley JL. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. Biochemistry. 42: 6380-91. PMID 12767219 DOI: 10.1021/Bi034053F  0.474
2003 Song J, Markley JL. Protein inhibitors of serine proteinases: role of backbone structure and dynamics in controlling the hydrolysis constant. Biochemistry. 42: 5186-94. PMID 12731859 DOI: 10.1021/Bi034041U  0.505
2003 Song J, Laskowski M, Qasim MA, Markley JL. NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain. Biochemistry. 42: 2847-56. PMID 12627950 DOI: 10.1021/Bi0269512  0.462
2003 Song J, Markley J. Role of backbone dynamics and structure in controlling the hydrolysis constants of serine proteinase inhibitors Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5518  0.461
2003 Song J, Laskowski M, Qasim M, Markley J. Solution Structures of the Two Stable Conformers of Turkey Ovomucoid that Coexist at Low pH Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5472  0.463
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for OMTKY3 (no salt added) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5448  0.386
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for P1-Ala OMTKY3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5424  0.409
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for OMTKY3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5411  0.407
2001 Song J, Markley JL. NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha). Journal of Molecular Recognition : Jmr. 14: 166-71. PMID 11391787 DOI: 10.1002/Jmr.530  0.528
2001 Hemmi H, Studts JM, Chae YK, Song J, Markley JL, Fox BG. Solution structure of the toluene 4-monooxygenase effector protein (T4moD). Biochemistry. 40: 3512-24. PMID 11297417 DOI: 10.1021/Bi0013703  0.67
1999 Qasim MA, Lu SM, Ding J, Bateman KS, James MN, Anderson S, Song J, Markley JL, Ganz PJ, Saunders CW, Laskowski M. Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases. Biochemistry. 38: 7142-50. PMID 10353824 DOI: 10.1021/Bi990265U  0.514
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