Jikui Song, Ph.D. - Publications

Affiliations: 
2002 University of Wisconsin, Madison, Madison, WI 
Area:
NMR spectroscopy and its biological applications

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Song J, Pfeifer GP. Are there specific readers of oxidized 5-methylcytosine bases? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27480808 DOI: 10.1002/bies.201600126  1
2016 Harter MR, Liu CD, Shen CL, Gonzalez-Hurtado E, Zhang ZM, Xu M, Martinez E, Peng CW, Song J. BS69/ZMYND11 C-Terminal Domains Bind and Inhibit EBNA2. Plos Pathogens. 12: e1005414. PMID 26845565 DOI: 10.1371/journal.ppat.1005414  1
2016 Jin SG, Zhang ZM, Dunwell TL, Harter MR, Wu X, Johnson J, Li Z, Liu J, Szabó PE, Lu Q, Xu GL, Song J, Pfeifer GP. Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration. Cell Reports. PMID 26774490 DOI: 10.1016/j.celrep.2015.12.044  1
2015 Zhang ZM, Rothbart SB, Allison DF, Cai Q, Harrison JS, Li L, Wang Y, Strahl BD, Wang GG, Song J. An Allosteric Interaction Links USP7 to Deubiquitination and Chromatin Targeting of UHRF1. Cell Reports. 12: 1400-6. PMID 26299963 DOI: 10.1016/j.celrep.2015.07.046  1
2015 Ma KW, Jiang S, Hawara E, Lee D, Pan S, Coaker G, Song J, Ma W. Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co-factor. The New Phytologist. PMID 26103463 DOI: 10.1111/nph.13528  1
2015 Zhang ZM, Liu S, Lin K, Luo Y, Perry JJ, Wang Y, Song J. Crystal Structure of Human DNA Methyltransferase 1. Journal of Molecular Biology. PMID 26070743 DOI: 10.1016/j.jmb.2015.06.001  1
2015 Zhang W, Sankaran S, Gozani O, Song J. A Meier-Gorlin syndrome mutation impairs the ORC1-nucleosome association. Acs Chemical Biology. 10: 1176-80. PMID 25689043 DOI: 10.1021/cb5009684  1
2014 Zhang F, Paramasivam M, Cai Q, Dai X, Wang P, Lin K, Song J, Seidman MM, Wang Y. Arsenite binds to the RING finger domains of RNF20-RNF40 histone E3 ubiquitin ligase and inhibits DNA double-strand break repair. Journal of the American Chemical Society. 136: 12884-7. PMID 25170678 DOI: 10.1021/ja507863d  1
2014 Ji D, Lin K, Song J, Wang Y. Effects of Tet-induced oxidation products of 5-methylcytosine on Dnmt1- and DNMT3a-mediated cytosine methylation. Molecular Biosystems. 10: 1749-52. PMID 24789765 DOI: 10.1039/c4mb00150h  1
2013 Jiang S, Yao J, Ma KW, Zhou H, Song J, He SY, Ma W. Bacterial effector activates jasmonate signaling by directly targeting JAZ transcriptional repressors. Plos Pathogens. 9: e1003715. PMID 24204266 DOI: 10.1371/journal.ppat.1003715  1
2013 Cai L, Rothbart SB, Lu R, Xu B, Chen WY, Tripathy A, Rockowitz S, Zheng D, Patel DJ, Allis CD, Strahl BD, Song J, Wang GG. An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting. Molecular Cell. 49: 571-82. PMID 23273982 DOI: 10.1016/j.molcel.2012.11.026  1
2012 Kuo AJ, Song J, Cheung P, Ishibe-Murakami S, Yamazoe S, Chen JK, Patel DJ, Gozani O. The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier-Gorlin syndrome. Nature. 484: 115-9. PMID 22398447 DOI: 10.1038/nature10956  1
2012 Song J, Teplova M, Ishibe-Murakami S, Patel DJ. Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation. Science (New York, N.Y.). 335: 709-12. PMID 22323818 DOI: 10.1126/science.1214453  1
2011 Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure (London, England : 1993). 19: 930-44. PMID 21742260 DOI: 10.1016/j.str.2011.05.002  1
2011 Song J, Rechkoblit O, Bestor TH, Patel DJ. Structure of DNMT1-DNA complex reveals a role for autoinhibition in maintenance DNA methylation. Science (New York, N.Y.). 331: 1036-40. PMID 21163962 DOI: 10.1126/science.1195380  1
2010 Teplova M, Song J, Gaw HY, Teplov A, Patel DJ. Structural insights into RNA recognition by the alternate-splicing regulator CUG-binding protein 1. Structure (London, England : 1993). 18: 1364-77. PMID 20947024 DOI: 10.1016/j.str.2010.06.018  1
2010 Qasim MA, Song J, Markley JL, Laskowski M. Cleavage of peptide bonds bearing ionizable amino acids at P(1) by serine proteases with hydrophobic S(1) pocket. Biochemical and Biophysical Research Communications. 400: 507-10. PMID 20800580 DOI: 10.1016/j.bbrc.2010.08.078  1
2010 Chu UB, Song J, Mavlyutov TA, Guo LW. In vitro interaction of tubulin with the photoreceptor cGMP phosphodiesterase gamma-subunit. Neuroscience Letters. 482: 225-9. PMID 20655363 DOI: 10.1016/j.neulet.2010.07.044  1
2010 Wang Z, Song J, Milne TA, Wang GG, Li H, Allis CD, Patel DJ. Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression. Cell. 141: 1183-94. PMID 20541251 DOI: 10.1016/j.cell.2010.05.016  1
2009 Wang GG, Song J, Wang Z, Dormann HL, Casadio F, Li H, Luo JL, Patel DJ, Allis CD. Haematopoietic malignancies caused by dysregulation of a chromatin-binding PHD finger. Nature. 459: 847-51. PMID 19430464 DOI: 10.1038/nature08036  1
2009 Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN, Volkman BF. Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds. Proteins. 76: 237-43. PMID 19326460 DOI: 10.1002/prot.22396  1
2008 Song J, McGivern JV, Nichols KW, Markley JL, Sheets MD. Structural basis for RNA recognition by a type II poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 105: 15317-22. PMID 18824697 DOI: 10.1073/pnas.0801274105  1
2008 Song J, Bettendorff L, Tonelli M, Markley JL. Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase. The Journal of Biological Chemistry. 283: 10939-48. PMID 18276586 DOI: 10.1074/jbc.M709675200  1
2008 Song J, Guo LW, Muradov H, Artemyev NO, Ruoho AE, Markley JL. Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure. Proceedings of the National Academy of Sciences of the United States of America. 105: 1505-10. PMID 18230733 DOI: 10.1073/pnas.0709558105  1
2007 Frederick RO, Bergeman L, Blommel PG, Bailey LJ, McCoy JG, Song J, Meske L, Bingman CA, Riters M, Dillon NA, Kunert J, Yoon JW, Lim A, Cassidy M, Bunge J, et al. Small-scale, semi-automated purification of eukaryotic proteins for structure determination. Journal of Structural and Functional Genomics. 8: 153-66. PMID 17985212 DOI: 10.1007/s10969-007-9032-5  1
2007 Phillips GN, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN. Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics. Journal of Structural and Functional Genomics. 8: 73-84. PMID 17786587 DOI: 10.1007/s10969-007-9023-6  1
2007 Song J, Zhao KQ, Newman CL, Vinarov DA, Markley JL. Solution structure of human sorting nexin 22. Protein Science : a Publication of the Protein Society. 16: 807-14. PMID 17400918 DOI: 10.1110/ps.072752407  1
2007 Song J, Markley JL. Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner. Protein and Peptide Letters. 14: 265-8. PMID 17346231 DOI: 10.2174/092986607780090801  1
2007 Song J, Markley JL. Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold. Journal of Molecular Biology. 366: 155-64. PMID 17166513 DOI: 10.1016/j.jmb.2006.11.024  1
2006 Song J, Lee MS, Carlberg I, Vener AV, Markley JL. Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications. Biochemistry. 45: 15633-43. PMID 17176085 DOI: 10.1021/bi062148m  1
2006 Lin IJ, Chen Y, Fee JA, Song J, Westler WM, Markley JL. Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential. Journal of the American Chemical Society. 128: 10672-3. PMID 16910649 DOI: 10.1021/ja0627388  1
2005 Song J, Tyler RC, Lee MS, Tyler EM, Markley JL. Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex. Journal of Molecular Biology. 354: 1043-51. PMID 16289575 DOI: 10.1016/j.jmb.2005.10.017  1
2005 Song J, Zhao Q, Lee MS, Markley JL. 1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana. Journal of Biomolecular Nmr. 32: 335. PMID 16211487 DOI: 10.1007/s10858-005-8205-4  1
2005 Zhao Q, Song J, Jin Z, Danilova V, Hellekant G, Markley JL. Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts. Biochemical and Biophysical Research Communications. 335: 256-63. PMID 16105551 DOI: 10.1016/j.bbrc.2005.07.049  1
2005 Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, ... ... Song J, et al. X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. Proteins. 61: 206-8. PMID 16080145 DOI: 10.1002/prot.20533  1
2005 Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS, Peterson FC, Phillips GN, Shahan MN, Singh S, Song J, Sreenath HK, et al. Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies. Proteins. 59: 633-43. PMID 15789406 DOI: 10.1002/prot.20436  1
2005 Song J, Tyler RC, Wrobel RL, Frederick RO, Vojtek FC, Jeon WB, Lee MS, Markley JL. Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein. Protein Science : a Publication of the Protein Society. 14: 1059-63. PMID 15741346 DOI: 10.1110/ps.041246805  1
2004 Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL. Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold. Journal of Biomolecular Nmr. 30: 215-8. PMID 15702529  1
2004 Song J, Zhao Q, Thao S, Frederick RO, Markley JL. Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana. Journal of Biomolecular Nmr. 30: 451-6. PMID 15630565 DOI: 10.1007/s10858-004-5356-7  1
2003 Song J, Laskowski M, Qasim MA, Markley JL. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. Biochemistry. 42: 6380-91. PMID 12767219 DOI: 10.1021/bi034053f  1
2003 Song J, Markley JL. Protein inhibitors of serine proteinases: role of backbone structure and dynamics in controlling the hydrolysis constant. Biochemistry. 42: 5186-94. PMID 12731859 DOI: 10.1021/bi034041u  1
2003 Song J, Laskowski M, Qasim MA, Markley JL. NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain. Biochemistry. 42: 2847-56. PMID 12627950 DOI: 10.1021/bi0269512  1
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