☰

Woonghee Lee, Ph.D. - Publications

Affiliations: 
2006-2008 Biochemistry Yonsei University, Seoul, South Korea 
 2009-2013 Biochemistry-ALS University of Wisconsin, Madison, Madison, WI 
 2013-2020 NMRFAM University of Wisconsin, Madison, Madison, WI 
 2020- Chemistry University of Colorado at Denver, Denver, CO, United States 
Area:
NMR spectroscopy and its biological applications
Website:
https://poky.clas.ucdenver.edu/wlee-group
Tree Info Similar researchers PubMed Report error

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wi S, Li C, Pham K, Lee W, Frydman L. Short and long range 2D N-N NMR correlations among peptide groups by novel solid state dipolar mixing schemes. Journal of Biomolecular Nmr. PMID 38102490 DOI: 10.1007/s10858-023-00429-0  0.735
2023 Rahimi M, Chiu A, Estefania Lopez Giraldo A, Yoon JH, Lee W. REDEN: Interactive multi-fitting decomposition-based NMR peak picking assistant. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 358: 107600. PMID 38039655 DOI: 10.1016/j.jmr.2023.107600  0.787
2023 Giraldo AEL, Werner Z, Rahimi M, Lee W. Breaking boundaries: TINTO in POKY for computer vision-based NMR walking strategies. Journal of Biomolecular Nmr. PMID 37804349 DOI: 10.1007/s10858-023-00423-6  0.756
2022 Dwarasala A, Rahimi M, Markley JL, Lee W. ssPINE: Probabilistic Algorithm for Automated Chemical Shift Assignment of Solid-State NMR Data from Complex Protein Systems. Membranes. 12. PMID 36135853 DOI: 10.3390/membranes12090834  0.76
2022 Manthey I, Tonelli M, Ii LC, Rahimi M, Markley JL, Lee W. POKY software tools encapsulating assignment strategies for solution and solid-state protein NMR data. Journal of Structural Biology: X. 6: 100073. PMID 36081577 DOI: 10.1016/j.yjsbx.2022.100073  0.787
2022 Rahimi M, Lee Y, Nguyen H, Chiu A, Lee W. A toolset for the solid-state NMR-based 3D structure calculation of proteins. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 339: 107214. PMID 35490563 DOI: 10.1016/j.jmr.2022.107214  0.779
2022 Yang MJ, Kim J, Lee Y, Lee W, Park CJ. NMR Structure and Biophysical Characterization of Thermophilic Single-Stranded DNA Binding Protein from . International Journal of Molecular Sciences. 23. PMID 35328522 DOI: 10.3390/ijms23063099  0.757
2022 Smith KP, Lee W, Tonelli M, Lee Y, Light SH, Cornilescu G, Chakravarthy S. Solution structure and dynamics of the mitochondrial-targeted GTPase-activating protein (GAP) VopE by an integrated NMR/SAXS approach. Protein Science : a Publication of the Protein Society. PMID 35137487 DOI: 10.1002/pro.4282  0.786
2021 Rahimi M, Lee Y, Markley JL, Lee W. iPick: Multiprocessing software for integrated NMR signal detection and validation. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 328: 106995. PMID 34004411 DOI: 10.1016/j.jmr.2021.106995  0.799
2021 Lee W, Rahimi M, Lee Y, Chiu A. POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules. Bioinformatics (Oxford, England). PMID 33715003 DOI: 10.1093/bioinformatics/btab180  0.767
2020 Shao H, Boulton S, Olivieri C, Mohamed H, Akimoto M, Subrahmanian MV, Veglia G, Markley JL, Melacini G, Lee W. CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery. Bioinformatics (Oxford, England). PMID 32926121 DOI: 10.1093/Bioinformatics/Btaa781  0.594
2020 Weber DK, Wang S, Markley JL, Veglia G, Lee W. PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins. Bioinformatics (Oxford, England). PMID 31930377 DOI: 10.1093/Bioinformatics/Btaa019  0.56
2020 Lee W, Tonelli M, Frederick RO, Haruta M, Cornilescu G, Cornilescu CC, Sussman MR, Markley JL. Solution Structure Determination of Arabidopsis Thaliana RALF8 Illustrates the use of Cutting-Edge Software Developed at the National Magnetic Resonance Facility at Madison Biophysical Journal. 118: 62a. DOI: 10.1016/J.Bpj.2019.11.514  0.538
2019 Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF. Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612. PMID 31819058 DOI: 10.1038/S41467-019-13577-5  0.505
2019 Lee W, Bahrami A, Dashti HT, Eghbalnia HR, Tonelli M, Westler WM, Markley JL. I-PINE web server: an integrative probabilistic NMR assignment system for proteins. Journal of Biomolecular Nmr. PMID 31165321 DOI: 10.1007/S10858-019-00255-3  0.828
2019 Shrestha OK, Sharma R, Tomiczek B, Lee W, Tonelli M, Cornilescu G, Stolarska M, Nierzwicki L, Czub J, Markley JL, Marszalek J, Ciesielski SJ, Craig EA. Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70. Plos One. 14: e0217098. PMID 31091298 DOI: 10.1371/Journal.Pone.0217098  0.467
2019 Lee W, Tonelli M, Wu C, Aceti DJ, Amarasinghe GK, Markley JL. Backbone resonance assignments and secondary structure of Ebola nucleoprotein 600-739 construct. Biomolecular Nmr Assignments. PMID 31076990 DOI: 10.1007/S12104-019-09898-7  0.548
2019 Frederick RO, Haruta M, Tonelli M, Lee W, Cornilescu G, Cornilescu CC, Sussman MR, Markley JL. Function and solution structure of the Arabidopsis thaliana RALF8 peptide. Protein Science : a Publication of the Protein Society. PMID 31004454 DOI: 10.1002/Pro.3628  0.539
2019 Smith KP, Lee W, Tonelli M, S-W Yeung P. Solution NMR Structure of the Gtpase Activating (GAP) Domain of Vope, A Vibrio Cholerae T3Ss Effector Protein Biophysical Journal. 116: 182a. DOI: 10.1016/J.Bpj.2018.11.1012  0.391
2017 Lee W, Markley JL. PINE-SPARKY.2 for automated NMR-based protein structure research. Bioinformatics (Oxford, England). PMID 29281006 DOI: 10.1093/Bioinformatics/Btx785  0.67
2017 Schilke BA, Ciesielski SJ, Ziegelhoffer T, Kamiya E, Tonelli M, Lee W, Cornilescu G, Hines JK, Markley JL, Craig EA. Broadening the functionality of a J-protein/Hsp70 molecular chaperone system. Plos Genetics. 13: e1007084. PMID 29084221 DOI: 10.1371/Journal.Pgen.1007084  0.479
2016 Lee W, Petit CM, Cornilescu G, Stark JL, Markley JL. The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data. Journal of Biomolecular Nmr. PMID 27169728 DOI: 10.1007/S10858-016-0036-Y  0.622
2016 Lee W, Cornilescu G, Dashti H, Eghbalnia HR, Tonelli M, Westler WM, Butcher SE, Henzler-Wildman KA, Markley JL. Integrative NMR for biomolecular research. Journal of Biomolecular Nmr. PMID 27023095 DOI: 10.1007/S10858-016-0029-X  0.801
2016 Stark JL, Eghbalnia HR, Lee W, Westler WM, Markley JL. NMRmix: A Tool for the Optimization of Compound Mixtures in 1D (1)H NMR Ligand Affinity Screens. Journal of Proteome Research. PMID 26965640 DOI: 10.1021/Acs.Jproteome.6B00121  0.56
2016 Dashti H, Tonelli M, Lee W, Westler WM, Cornilescu G, Ulrich EL, Markley JL. Probabilistic validation of protein NMR chemical shift assignments. Journal of Biomolecular Nmr. PMID 26724815 DOI: 10.1007/S10858-015-0007-8  0.8
2015 Park KY, Kim EY, Lee W, Kim TY, Kim WT. Expression, subcellular localization, and enzyme activity of a recombinant human extra-cellular superoxide dismutase in tobacco (Nicotiana benthamiana L.). Protein Expression and Purification. PMID 26611610 DOI: 10.1016/j.pep.2015.11.014  0.494
2015 Park H, Lee S, Shrestha P, Kim J, Park JA, Ko Y, Ban YH, Park DY, Ha SJ, Koh GY, Hong VS, Mochizuki N, Kim YM, Lee W, Kwon YG. AMIGO2, a novel membrane anchor of PDK1, controls cell survival and angiogenesis via Akt activation. The Journal of Cell Biology. 211: 619-37. PMID 26553931 DOI: 10.1083/Jcb.201503113  0.505
2015 Chen HL, Yang RC, Lee WT, Lee PL, Hsu JH, Wu JR, Dai ZK. Lung function in very preterm infants with patent ductus arteriosus under conservative management: an observational study. Bmc Pediatrics. 15: 167. PMID 26496854 DOI: 10.1186/s12887-015-0480-y  0.325
2015 Dashti H, Lee W, Tonelli M, Cornilescu CC, Cornilescu G, Assadi-Porter FM, Westler WM, Eghbalnia HR, Markley JL. NMRFAM-SDF: a protein structure determination framework. Journal of Biomolecular Nmr. PMID 25900069 DOI: 10.1007/S10858-015-9933-8  0.803
2015 Lee W, Tonelli M, Markley JL. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Bioinformatics (Oxford, England). 31: 1325-7. PMID 25505092 DOI: 10.1093/Bioinformatics/Btu830  0.633
2015 Tonelli M, Eller CH, Singarapu KK, Lee W, Bahrami A, Westler WM, Raines RT, Markley JL. Assignments of RNase A by ADAPT-NMR and enhancer. Biomolecular Nmr Assignments. 9: 81-8. PMID 24619609 DOI: 10.1007/S12104-014-9549-Z  0.777
2014 Lee W, Stark JL, Markley JL. PONDEROSA-C/S: client-server based software package for automated protein 3D structure determination. Journal of Biomolecular Nmr. 60: 73-5. PMID 25190042 DOI: 10.1007/S10858-014-9855-X  0.614
2014 Lee W, Watters KE, Troupis AT, Reinen NM, Suchy FP, Moyer KL, Frederick RO, Tonelli M, Aceti DJ, Palmenberg AC, Markley JL. Solution structure of the 2A protease from a common cold agent, human rhinovirus C2, strain W12. Plos One. 9: e97198. PMID 24937088 DOI: 10.1371/Journal.Pone.0097198  0.462
2014 Poplawski A, Hu K, Lee W, Natesan S, Peng D, Carlson S, Shi X, Balaz S, Markley JL, Glass KC. Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain. Journal of Molecular Biology. 426: 1661-76. PMID 24333487 DOI: 10.1016/J.Jmb.2013.12.007  0.48
2013 Lee W, Hu K, Tonelli M, Bahrami A, Neuhardt E, Glass KC, Markley JL. Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 236: 83-8. PMID 24091140 DOI: 10.1016/J.Jmr.2013.08.010  0.778
2013 Lee W, Bahrami A, Markley JL. ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy. Bioinformatics (Oxford, England). 29: 515-7. PMID 23220573 DOI: 10.1093/Bioinformatics/Bts692  0.801
2012 Lee W, Yu W, Kim S, Chang I, Lee W, Markley JL. PACSY, a relational database management system for protein structure and chemical shift analysis. Journal of Biomolecular Nmr. 54: 169-79. PMID 22903636 DOI: 10.1007/S10858-012-9660-3  0.742
2012 Lee W, Markley JL. PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysis Proceedings - 2012 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2012. 930-932. DOI: 10.1109/BIBMW.2012.6470267  0.503
2011 Yu W, Lee W, Lee W, Kim S, Chang I. Uncovering symmetry-breaking vector and reliability order for assigning secondary structures of proteins from atomic NMR chemical shifts in amino acids. Journal of Biomolecular Nmr. 51: 411-24. PMID 22038647 DOI: 10.1007/S10858-011-9579-0  0.677
2011 Lee W, Kim JH, Westler WM, Markley JL. PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinformatics (Oxford, England). 27: 1727-8. PMID 21511715 DOI: 10.1093/Bioinformatics/Btr200  0.688
2009 Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL. PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. Bioinformatics (Oxford, England). 25: 2085-7. PMID 19497931 DOI: 10.1093/Bioinformatics/Btp345  0.785
2008 Shin J, Lee W, Lee W. Structural proteomics by NMR spectroscopy. Expert Review of Proteomics. 5: 589-601. PMID 18761469 DOI: 10.1586/14789450.5.4.589  0.685
Show low-probability matches.