Alexander W. Zaranek, Ph.D. - Publications

Affiliations: 
2009 Harvard University, Cambridge, MA, United States 
Area:
Computational Genetics

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Grishin D, Obbad K, Estep P, Quinn K, Zaranek SW, Zaranek AW, Vandewege W, Clegg T, César N, Cifric M, Church G. Accelerating Genomic Data Generation and Facilitating Genomic Data Access Using Decentralization, Privacy-Preserving Technologies and Equitable Compensation Blockchain in Healthcare Today. 1: 1-23. DOI: 10.30953/BHTY.V1.34  0.709
2017 Chan Y, Tung M, Garruss AS, Zaranek SW, Chan YK, Lunshof JE, Zaranek AW, Ball MP, Chou MF, Lim ET, Church GM. An unbiased index to quantify participant's phenotypic contribution to an open-access cohort. Scientific Reports. 7: 46148. PMID 28387241 DOI: 10.1038/Srep46148  0.506
2017 Lubin IM, Aziz N, Babb LJ, Ballinger D, Bisht H, Church DM, Cordes S, Eilbeck K, Hyland F, Kalman L, Landrum M, Lockhart ER, Maglott D, Marth G, Pfeifer JD, ... ... Zaranek AW, et al. Principles and Recommendations for Standardizing the Use of the Next-Generation Sequencing Variant File in Clinical Settings. The Journal of Molecular Diagnostics : Jmd. PMID 28315672 DOI: 10.1016/J.Jmoldx.2016.12.001  0.583
2016 Mao Q, Ciotlos S, Zhang RY, Ball MP, Chin R, Carnevali P, Barua N, Nguyen S, Agarwal MR, Clegg T, Connelly A, Vandewege W, Zaranek AW, Estep PW, Church GM, et al. The whole genome sequences and experimentally phased haplotypes of over 100 personal genomes. Gigascience. 5: 42. PMID 27724973 DOI: 10.1186/S13742-016-0148-Z  0.83
2016 Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, ... ... Zaranek AW, et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. Scientific Data. 3: 160025. PMID 27271295 DOI: 10.1038/Sdata.2016.25  0.827
2014 Ball MP, Bobe JR, Chou MF, Clegg T, Estep PW, Lunshof JE, Vandewege W, Zaranek A, Church GM. Harvard Personal Genome Project: lessons from participatory public research. Genome Medicine. 6: 10. PMID 24713084 DOI: 10.1186/Gm527  0.806
2012 Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, et al. A public resource facilitating clinical use of genomes. Proceedings of the National Academy of Sciences of the United States of America. 109: 11920-7. PMID 22797899 DOI: 10.1073/Pnas.1201904109  0.687
2012 Peters BA, Kermani BG, Sparks AB, Alferov O, Hong P, Alexeev A, Jiang Y, Dahl F, Tang YT, Haas J, Robasky K, Zaranek AW, Lee JH, Ball MP, Peterson JE, et al. Accurate whole-genome sequencing and haplotyping from 10 to 20 human cells. Nature. 487: 190-5. PMID 22785314 DOI: 10.1038/Nature11236  0.782
2012 Thakuria JV, Zaranek AW, Church GM, Berry GT. Back to the future: from genome to metabolome. Human Mutation. 33: 809-12. PMID 22431014 DOI: 10.1002/Humu.22073  0.693
2011 Dewey FE, Chen R, Cordero SP, Ormond KE, Caleshu C, Karczewski KJ, Whirl-Carrillo M, Wheeler MT, Dudley JT, Byrnes JK, Cornejo OE, Knowles JW, Woon M, Sangkuhl K, Gong L, ... ... Zaranek AW, et al. Phased whole-genome genetic risk in a family quartet using a major allele reference sequence. Plos Genetics. 7: e1002280. PMID 21935354 DOI: 10.1371/Journal.Pgen.1002280  0.687
2011 Zaranek AW, Clegg T, Vandewege W, Thakuria JV. Comments and Suggestions for Improvement of the Archon Genomics X PRIZE Validation Protocol Nature Precedings. 6: 1-1. DOI: 10.1038/Npre.2011.5766.1  0.366
2010 Zaranek AW, Levanon EY, Zecharia T, Clegg T, Church GM. A survey of genomic traces reveals a common sequencing error, RNA editing, and DNA editing. Plos Genetics. 6: e1000954. PMID 20531933 DOI: 10.1371/Journal.Pgen.1000954  0.64
2010 Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, ... ... Zaranek AW, et al. Clinical assessment incorporating a personal genome. Lancet (London, England). 375: 1525-35. PMID 20435227 DOI: 10.1016/S0140-6736(10)60452-7  0.802
2010 Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, Carnevali P, Nazarenko I, Nilsen GB, Yeung G, Dahl F, Fernandez A, Staker B, Pant KP, Baccash J, ... ... Zaranek AW, et al. Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays. Science (New York, N.Y.). 327: 78-81. PMID 19892942 DOI: 10.1126/Science.1181498  0.824
2009 Kim JI, Ju YS, Park H, Kim S, Lee S, Yi JH, Mudge J, Miller NA, Hong D, Bell CJ, Kim HS, Chung IS, Lee WC, Lee JS, Seo SH, ... ... Zaranek AW, et al. A highly annotated whole-genome sequence of a Korean individual. Nature. 460: 1011-5. PMID 19587683 DOI: 10.1038/Nature08211  0.793
2009 Whiteford N, Skelly T, Curtis C, Ritchie ME, Löhr A, Zaranek AW, Abnizova I, Brown C. Swift: primary data analysis for the Illumina Solexa sequencing platform. Bioinformatics (Oxford, England). 25: 2194-9. PMID 19549630 DOI: 10.1093/Bioinformatics/Btp383  0.407
2009 Li JB, Gao Y, Aach J, Zhang K, Kryukov GV, Xie B, Ahlford A, Yoon JK, Rosenbaum AM, Zaranek AW, LeProust E, Sunyaev SR, Church GM. Multiplex padlock targeted sequencing reveals human hypermutable CpG variations. Genome Research. 19: 1606-15. PMID 19525355 DOI: 10.1101/Gr.092213.109  0.758
2008 Zaranek AW, Clegg T, Vandewege W, Church GM. Free Factories: Unified Infrastructure for Data Intensive Web Services. Proceedings of the Usenix ... Annual Technical Conference. Usenix Technical Conference. 2008: 391-404. PMID 20514356  0.325
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