Jennifer M. Heemstra, Ph.D. - Publications

Affiliations: 
2005 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
Area:
synthesis and study of macromolecules

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Knutson SD, Heemstra JM. Protein-based molecular recognition tools for detecting and profiling RNA modifications. Current Opinion in Structural Biology. 69: 1-10. PMID 33445115 DOI: 10.1016/j.sbi.2020.12.006  1
2020 Knutson SD, Sanford AA, Swenson CS, Korn MM, Manuel BA, Heemstra JM. Thermoreversible Control of Nucleic Acid Structure and Function with Glyoxal Caging. Journal of the American Chemical Society. 142: 17766-17781. PMID 33017148 DOI: 10.1021/jacs.0c08996  1
2020 Ayele TM, Knutson SD, Heemstra JM. Covalent live-cell labeling of proteins using a photoreactive fluorogen. Methods in Enzymology. 639: 355-377. PMID 32475409 DOI: 10.1016/bs.mie.2020.04.019  1
2020 Knutson SD, Heemstra JM. EndoVIPER-seq for Improved Detection of A-to-I Editing Sites in Cellular RNA. Current Protocols in Chemical Biology. 12: e82. PMID 32469473 DOI: 10.1002/cpch.82  1
2020 Knutson SD, Korn MM, Johnson RP, Monteleone LR, Dailey DM, Swenson CS, Beal PA, Heemstra J. Chemical Profiling of A-to-I RNA Editing Using a Click-Compatible Phenylacrylamide. Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 32428320 DOI: 10.1002/chem.202001667  1
2020 Knutson SD, Arthur RA, Johnston HR, Heemstra JM. Selective Enrichment of A-to-I Edited Transcripts from Cellular RNA Using Endonuclease V. Journal of the American Chemical Society. PMID 32109061 DOI: 10.1021/jacs.9b13406  1
2020 Swenson CS, Heemstra JM. Peptide nucleic acids harness dual information codes in a single molecule. Chemical Communications (Cambridge, England). 56: 1926-1935. PMID 32009137 DOI: 10.1039/c9cc09905k  1
2019 Swenson CS, Velusamy A, Argueta-Gonzalez HS, Heemstra JM. Bilingual Peptide Nucleic Acids: Encoding the Languages of Nucleic Acids and Proteins in a Single Self-Assembling Biopolymer. Journal of the American Chemical Society. PMID 31711285 DOI: 10.1021/jacs.9b09146  1
2019 Ayele T, Knutson SD, Ellipilli S, Hwang H, Heemstra JM. Fluorogenic Photoaffinity Labeling of Proteins in Living Cells. Bioconjugate Chemistry. PMID 30978287 DOI: 10.1021/acs.bioconjchem.9b00203  1
2018 Knutson SD, Ayele TM, Heemstra JM. Chemical Labeling and Affinity Capture of Inosine-Containing RNAs Using Acrylamidofluorescein. Bioconjugate Chemistry. PMID 30148626 DOI: 10.1021/acs.bioconjchem.8b00541  1
2018 Rangel AE, Chen Z, Ayele TM, Heemstra JM. In vitro selection of an XNA aptamer capable of small-molecule recognition. Nucleic Acids Research. PMID 30085205 DOI: 10.1093/nar/gky667  0.92
2018 Ellipilli S, Phillips JD, Heemstra JM. Synthesis of comb-shaped DNA using a non-nucleosidic branching phosphoramidite. Organic & Biomolecular Chemistry. PMID 29881861 DOI: 10.1039/c8ob00626a  0.6
2016 Hanson WM, Chen Z, Jackson LK, Attaf M, Sewell AK, Heemstra JM, Phillips JD. Reversible Oligonucleotide Chain Blocking Enables Bead Capture and Amplification of T-Cell Receptor α and β Chain mRNAs. Journal of the American Chemical Society. PMID 27478996 DOI: 10.1021/jacs.6b04465  1
2016 Chen Z, Meek KN, Rangel AE, Heemstra JM. Synthesis and polymerase incorporation of β,γ-modified α-l-threofuranosyl thymine triphosphate mimics. Bioorganic & Medicinal Chemistry Letters. PMID 27422338 DOI: 10.1016/j.bmcl.2016.07.008  0.6
2016 Davis DL, Price EK, Aderibigbe SO, Larkin MX, Barlow ED, Chen R, Ford LC, Gray ZT, Gren SH, Jin Y, Keddington KS, Kent AD, Kim D, Lewis A, Marrouche RS, ... ... Heemstra JM, et al. Effect of Buffer Conditions and Organic Co-Solvents on the Rate of Strain-Promoted Azide-Alkyne Cycloaddition. The Journal of Organic Chemistry. PMID 27387821 DOI: 10.1021/acs.joc.6b01112  1
2016 Meek KN, Rangel AE, Heemstra JM. Enhancing aptamer function and stability via in vitro selection using modified nucleic acids. Methods (San Diego, Calif.). PMID 27012179 DOI: 10.1016/j.ymeth.2016.03.008  0.6
2016 Perera RT, Fleming AM, Peterson AM, Heemstra JM, Burrows CJ, White HS. Unzipping of A-Form DNA-RNA, A-Form DNA-PNA, and B-Form DNA-DNA in the α-Hemolysin Nanopore. Biophysical Journal. 110: 306-314. PMID 26789754 DOI: 10.1016/j.bpj.2015.11.020  1
2015 Peterson AM, Jahnke FM, Heemstra JM. Modulating the Substrate Selectivity of DNA Aptamers Using Surfactants. Langmuir : the Acs Journal of Surfaces and Colloids. 31: 11769-73. PMID 26465173 DOI: 10.1021/acs.langmuir.5b02818  1
2015 Anderton GI, Bangerter AS, Davis TC, Feng Z, Furtak AJ, Larsen JO, Scroggin TL, Heemstra JM. Accelerating Strain-Promoted Azide-Alkyne Cycloaddition Using Micellar Catalysis. Bioconjugate Chemistry. PMID 26056848 DOI: 10.1021/acs.bioconjchem.5b00274  1
2015 Feagin TA, Olsen DP, Headman ZC, Heemstra JM. High-throughput enantiopurity analysis using enantiomeric DNA-based sensors. Journal of the American Chemical Society. 137: 4198-206. PMID 25747268 DOI: 10.1021/jacs.5b00923  1
2015 Peterson AM, Heemstra JM. Controlling self-assembly of DNA-polymer conjugates for applications in imaging and drug delivery. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. 7: 282-97. PMID 25327363 DOI: 10.1002/wnan.1309  1
2015 Peterson AM, Tan Z, Kimbrough EM, Heemstra JM. 3,3′-Dioctadecyloxacarbocyanine perchlorate (DiO) as a fluorogenic probe for measurement of critical micelle concentration Analytical Methods. 7: 6877-6882. DOI: 10.1039/c5ay01444a  1
2014 Sharma AK, Plant JJ, Rangel AE, Meek KN, Anamisis AJ, Hollien J, Heemstra JM. Fluorescent RNA labeling using self-alkylating ribozymes. Acs Chemical Biology. 9: 1680-4. PMID 24896502 DOI: 10.1021/cb5002119  1
2013 Kent AD, Spiropulos NG, Heemstra JM. General approach for engineering small-molecule-binding DNA split aptamers. Analytical Chemistry. 85: 9916-23. PMID 24033257 DOI: 10.1021/ac402500n  1
2012 Bag SS, Heemstra JM, Saito Y, Chenoweth DM. Expansion of the genetic alphabet: unnatural nucleobases and their applications. Journal of Nucleic Acids. 2012: 718582. PMID 23316342 DOI: 10.1155/2012/718582  1
2012 Sharma AK, Kent AD, Heemstra JM. Enzyme-linked small-molecule detection using split aptamer ligation. Analytical Chemistry. 84: 6104-9. PMID 22715870 DOI: 10.1021/ac300997q  1
2011 Sharma AK, Heemstra JM. Small-molecule-dependent split aptamer ligation. Journal of the American Chemical Society. 133: 12426-9. PMID 21761903 DOI: 10.1021/ja205518e  0.96
2009 Heemstra JM, Liu DR. Templated synthesis of peptide nucleic acids via sequence-selective base-filling reactions. Journal of the American Chemical Society. 131: 11347-9. PMID 19722647 DOI: 10.1021/ja904712t  1
2009 Kowtoniuk WE, Shen Y, Heemstra JM, Agarwal I, Liu DR. A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA. Proceedings of the National Academy of Sciences of the United States of America. 106: 7768-73. PMID 19416889 DOI: 10.1073/pnas.0900528106  1
2006 Stone MT, Heemstra JM, Moore JS. The chain-length dependence test. Accounts of Chemical Research. 39: 11-20. PMID 16411735 DOI: 10.1002/CHIN.200616275  1
2004 Heemstra JM, Moore JS. Enhanced methylation rate within a foldable molecular receptor. The Journal of Organic Chemistry. 69: 9234-7. PMID 15609960 DOI: 10.1021/jo048506d  1
2004 Heemstra JM, Moore JS. Helix stabilization through pyridinium-pi interactions. Chemical Communications (Cambridge, England). 1480-1. PMID 15216340 DOI: 10.1039/b405980h  1
2004 Goto H, Heemstra JM, Hill DJ, Moore JS. Single-site modifications and their effect on the folding stability of m-phenylene ethynylene oligomers. Organic Letters. 6: 889-92. PMID 15012057 DOI: 10.1021/ol036376+  1
2004 Heemstra JM, Moore JS. Pyridine-containing m-phenylene ethynylene oligomers having tunable basicities. Organic Letters. 6: 659-62. PMID 14986943 DOI: 10.1021/ol0363016  1
2004 Heemstra JM, Moore JS. Folding-promoted methylation of a helical DMAP analogue. Journal of the American Chemical Society. 126: 1648-9. PMID 14871092 DOI: 10.1021/ja031842b  1
2004 Heemstra JM, Moore JS. A novel indicator series for measuring pKa values in acetonitrile Tetrahedron. 60: 7287-7292. DOI: 10.1016/j.tet.2004.05.019  1
2004 Heemstra JM, Moore JS. Helix stabilization through pyridinium-π interactions Chemical Communications. 10: 1480-1481.  1
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