Jinfa Ying, Ph.D. - Publications

Affiliations: 
2004 University of Arizona, Tucson, AZ 
Area:
Organic Chemistry, Biochemistry, Chemical Biology and Medicinal Chemistry

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Barnes CA, Shen Y, Ying J, Bax A. Modulating the Stiffness of the Myosin VI Single α-Helical Domain. Biophysical Journal. PMID 32049057 DOI: 10.1016/J.Bpj.2020.01.003  0.316
2019 Ramanujam V, Shen Y, Ying J, Mobli M. Residual Dipolar Couplings for Resolving Cysteine Bridges in Disulfide-Rich Peptides. Frontiers in Chemistry. 7: 889. PMID 32039137 DOI: 10.3389/Fchem.2019.00889  0.408
2019 Ying J, Barnes CA, Louis JM, Bax A. Importance of time-ordered non-uniform sampling of multi-dimensional NMR spectra of Aβ peptide under aggregating conditions. Journal of Biomolecular Nmr. PMID 31407200 DOI: 10.1007/S10858-019-00235-7  0.315
2019 Barnes CA, Shen Y, Ying J, Takagi Y, Torchia DA, Sellers JR, Bax A. Remarkable rigidity of the single α-helical domain of myosin-VI revealed by NMR spectroscopy. Journal of the American Chemical Society. PMID 31117653 DOI: 10.1021/Jacs.9B03116  0.374
2018 Charlier C, Alderson TR, Courtney JM, Ying J, Anfinrud P, Bax A. Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell. Proceedings of the National Academy of Sciences of the United States of America. PMID 29666248 DOI: 10.1073/Pnas.1803642115  0.302
2017 Alderson TR, Lee JH, Charlier C, Ying J, Bax A. Propensity for cis-proline formation in unfolded proteins. Chembiochem : a European Journal of Chemical Biology. PMID 29064600 DOI: 10.1002/Cbic.201700548  0.347
2017 Natarajan K, McShan AC, Jiang J, Kumirov VK, Wang R, Zhao H, Schuck P, Tilahun ME, Boyd LF, Ying J, Bax A, Margulies DH, Sgourakis NG. An allosteric site in the T-cell receptor Cβ domain plays a critical signalling role. Nature Communications. 8: 15260. PMID 28508865 DOI: 10.1038/Ncomms15260  0.333
2016 Lee JH, Ying J, Bax A. Nuclear Magnetic Resonance Observation of α-Synuclein Membrane Interaction by Monitoring the Acetylation Reactivity of Its Lysine Side Chains. Biochemistry. 55: 4949-59. PMID 27455358 DOI: 10.1021/Acs.Biochem.6B00637  0.332
2016 Roche J, Shen Y, Lee JH, Ying J, Bax A. Monomeric Aβ(1-40) and Aβ(1-42) Peptides in Solution Adopt Very Similar Ramachandran Map Distributions That Closely Resemble Random Coil. Biochemistry. 55: 762-75. PMID 26780756 DOI: 10.1021/Acs.Biochem.5B01259  0.315
2016 Roche J, Ying J, Bax A. Accurate measurement of (3)J(HNHα) couplings in small or disordered proteins from WATERGATE-optimized TROSY spectra. Journal of Biomolecular Nmr. 64: 1-7. PMID 26660434 DOI: 10.1007/S10858-015-0004-Y  0.314
2016 Lee JH, Ying J, Bax A. Quantitative evaluation of positive ϕ angle propensity in flexible regions of proteins from three-bond J couplings. Physical Chemistry Chemical Physics : Pccp. 18: 5759-70. PMID 26415896 DOI: 10.1039/C5Cp04542H  0.301
2015 Adare A, Afanasiev S, Aidala C, Ajitanand NN, Akiba Y, Akimoto R, Al-Bataineh H, Alexander J, Alfred M, Al-Ta'ani H, Andrews KR, Angerami A, Aoki K, Apadula N, Aphecetche L, ... ... Ying J, et al. Measurements of Elliptic and Triangular Flow in High-Multiplicity 3He+Au Collisions at √(s(NN))=200 GeV. Physical Review Letters. 115: 142301. PMID 26551807 DOI: 10.1103/Physrevlett.115.142301  0.441
2015 Li F, Grishaev A, Ying J, Bax A. Side Chain Conformational Distributions of a Small Protein Derived from Model-Free Analysis of a Large Set of Residual Dipolar Couplings. Journal of the American Chemical Society. 137: 14798-811. PMID 26523828 DOI: 10.1021/Jacs.5B10072  0.316
2015 Adare A, Aidala C, Ajitanand NN, Akiba Y, Akimoto R, Al-Bataineh H, Al-Ta'ani H, Alexander J, Andrews KR, Angerami A, Aoki K, Apadula N, Appelt E, Aramaki Y, Armendariz R, ... ... Ying J, et al. Measurement of Long-Range Angular Correlation and Quadrupole Anisotropy of Pions and (Anti)Protons in Central d+Au Collisions at sqrt[s_{NN}]=200 GeV. Physical Review Letters. 114: 192301. PMID 26024164 DOI: 10.1103/Physrevlett.114.192301  0.45
2015 Li F, Lee JH, Grishaev A, Ying J, Bax A. High accuracy of Karplus equations for relating three-bond J couplings to protein backbone torsion angles. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 16: 572-8. PMID 25511552 DOI: 10.1002/Cphc.201402704  0.301
2014 Mantsyzov AB, Maltsev AS, Ying J, Shen Y, Hummer G, Bax A. A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein. Protein Science : a Publication of the Protein Society. 23: 1275-90. PMID 24976112 DOI: 10.1002/Pro.2511  0.318
2014 Ying J, Roche J, Bax A. Homonuclear decoupling for enhancing resolution and sensitivity in NOE and RDC measurements of peptides and proteins. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 241: 97-102. PMID 24360766 DOI: 10.1016/J.Jmr.2013.11.006  0.368
2013 Roche J, Ying J, Maltsev AS, Bax A. Impact of hydrostatic pressure on an intrinsically disordered protein: a high-pressure NMR study of α-synuclein. Chembiochem : a European Journal of Chemical Biology. 14: 1754-61. PMID 23813793 DOI: 10.1002/Cbic.201300244  0.312
2013 Libich DS, Fawzi NL, Ying J, Clore GM. Probing the transient dark state of substrate binding to GroEL by relaxation-based solution NMR. Proceedings of the National Academy of Sciences of the United States of America. 110: 11361-6. PMID 23798407 DOI: 10.1073/Pnas.1305715110  0.304
2013 Maltsev A, Ying J, Shen Y, Bax A. Alpha-Synuclein, an Intrinsically Unstructured Protein. How Interesting Can It Be? Biophysical Journal. 104: 5a. DOI: 10.1016/J.Bpj.2012.11.051  0.34
2012 Maltsev AS, Ying J, Bax A. Deuterium isotope shifts for backbone ¹H, ¹⁵N and ¹³C nuclei in intrinsically disordered protein α-synuclein. Journal of Biomolecular Nmr. 54: 181-91. PMID 22960996 DOI: 10.1007/S10858-012-9666-X  0.32
2012 Maltsev AS, Ying J, Bax A. Impact of N-terminal acetylation of α-synuclein on its random coil and lipid binding properties. Biochemistry. 51: 5004-13. PMID 22694188 DOI: 10.1021/Bi300642H  0.36
2012 Liu J, Ying J, Chow VTK, Hruby VJ, Satyanarayanajois SD. Correction to Structure–Activity Studies of Peptides from the “Hot-Spot” Region of Human CD2 Protein: Development of Peptides for Immunomodulation Journal of Medicinal Chemistry. 55: 7295-7295. DOI: 10.1021/Jm3010948  0.435
2011 Fawzi NL, Ying J, Ghirlando R, Torchia DA, Clore GM. Atomic-resolution dynamics on the surface of amyloid-β protofibrils probed by solution NMR. Nature. 480: 268-72. PMID 22037310 DOI: 10.1038/Nature10577  0.321
2011 Ying J, Wang J, Grishaev A, Yu P, Wang YX, Bax A. Measurement of (1)H-(15)N and (1)H-(13)C residual dipolar couplings in nucleic acids from TROSY intensities. Journal of Biomolecular Nmr. 51: 89-103. PMID 21947918 DOI: 10.1007/S10858-011-9544-Y  0.321
2011 Trigo-Mouriño P, Navarro-Vázquez A, Ying J, Gil RR, Bax A. Structural discrimination in small molecules by accurate measurement of long-range proton-carbon NMR residual dipolar couplings. Angewandte Chemie (International Ed. in English). 50: 7576-80. PMID 21751308 DOI: 10.1002/Anie.201101739  0.322
2010 Fawzi NL, Ying J, Torchia DA, Clore GM. Kinetics of amyloid beta monomer-to-oligomer exchange by NMR relaxation. Journal of the American Chemical Society. 132: 9948-51. PMID 20604554 DOI: 10.1021/Ja1048253  0.336
2009 Yao L, Ying J, Bax A. Improved accuracy of 15N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins. Journal of Biomolecular Nmr. 43: 161-70. PMID 19205898 DOI: 10.1007/S10858-009-9299-X  0.309
2008 Yao L, Vögeli B, Ying J, Bax A. NMR determination of amide N-H equilibrium bond length from concerted dipolar coupling measurements. Journal of the American Chemical Society. 130: 16518-20. PMID 19049453 DOI: 10.1021/Ja805654F  0.308
2008 Grishaev A, Ying J, Canny MD, Pardi A, Bax A. Solution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS data. Journal of Biomolecular Nmr. 42: 99-109. PMID 18787959 DOI: 10.1007/S10858-008-9267-X  0.332
2008 Agnes RS, Ying J, Kövér KE, Lee YS, Davis P, Ma SW, Badghisi H, Porreca F, Lai J, Hruby VJ. Structure-activity relationships of bifunctional cyclic disulfide peptides based on overlapping pharmacophores at opioid and cholecystokinin receptors. Peptides. 29: 1413-23. PMID 18502541 DOI: 10.1016/J.Peptides.2008.03.022  0.734
2007 Vögeli B, Ying J, Grishaev A, Bax A. Limits on variations in protein backbone dynamics from precise measurements of scalar couplings. Journal of the American Chemical Society. 129: 9377-85. PMID 17608477 DOI: 10.1021/Ja070324O  0.331
2006 Ying J, Gu X, Cai M, Dedek M, Vagner J, Trivedi DB, Hruby VJ. Design, synthesis, and biological evaluation of new cyclic melanotropin peptide analogues selective for the human melanocortin-4 receptor. Journal of Medicinal Chemistry. 49: 6888-96. PMID 17154518 DOI: 10.1021/Jm060768F  0.747
2006 Grishaev A, Ying J, Bax A. Pseudo-CSA restraints for NMR refinement of nucleic acid structure. Journal of the American Chemical Society. 128: 10010-1. PMID 16881619 DOI: 10.1021/Ja0633058  0.319
2005 Liu J, Ying J, Chow VT, Hruby VJ, Satyanarayanajois SD. Structure-activity studies of peptides from the "hot-spot" region of human CD2 protein: development of peptides for immunomodulation. Journal of Medicinal Chemistry. 48: 6236-49. PMID 16190751 DOI: 10.1021/Jm0503547  0.447
2005 Cai M, Mayorov AV, Ying J, Stankova M, Trivedi D, Cabello C, Hruby VJ. Design of novel melanotropin agonists and antagonists with high potency and selectivity for human melanocortin receptors. Peptides. 26: 1481-5. PMID 15876475 DOI: 10.1016/J.Peptides.2005.03.020  0.748
2005 Gu X, Ying J, Min B, Cain JP, Davis P, Willey P, Navratilova E, Yamamura HI, Porreca F, Hruby VJ. Parallel synthesis and biological evaluation of different sizes of bicyclo[2,3]-Leu-enkephalin analogues. Biopolymers. 80: 151-63. PMID 15660379 DOI: 10.1002/Bip.20208  0.749
2004 Gu X, Ying J, Agnes RS, Navratilova E, Davis P, Stahl G, Porreca F, Yamamura HI, Hruby VJ. Novel design of bicyclic beta-turn dipeptides on solid-phase supports and synthesis of [3.3.0]-Bicyclo([2,3])-leu-enkephalin analogues. Organic Letters. 6: 3285-8. PMID 15355033 DOI: 10.1021/Ol0488183  0.771
2004 Ndungu JM, Gu X, Gross DE, Ying J, Hruby VJ. A simple and efficient synthesis of an Asp-Gly dipeptide mimetic Tetrahedron Letters. 45: 3245-3247. DOI: 10.1016/J.Tetlet.2004.02.117  0.759
2004 Gu X, Ndungu JM, Qiu W, Ying J, Carducci MD, Wooden H, Hruby VJ. Large scale enantiomeric synthesis, purification, and characterization of ω-unsaturated amino acids via a Gly-Ni(II)-BPB-complex Tetrahedron. 60: 8233-8243. DOI: 10.1016/J.Tet.2004.06.087  0.758
2003 Ying J, Kövér KE, Gu X, Han G, Trivedi DB, Kavarana MJ, Hruby VJ. Solution structures of cyclic melanocortin agonists and antagonists by NMR. Biopolymers. 71: 696-716. PMID 14991679 DOI: 10.1002/Bip.10596  0.733
2003 Zhang J, Xiong C, Ying J, Wang W, Hruby VJ. Stereoselective synthesis of novel dipeptide beta-turn mimetics targeting melanocortin peptide receptors. Organic Letters. 5: 3115-8. PMID 12916995 DOI: 10.1021/Ol0351347  0.722
2003 Xiong C, Zhang J, Davis P, Wang W, Ying J, Porreca F, Hruby VJ. Stereoselective synthesis of individual isomers of Leu-enkephalin analogues containing substituted beta-turn bicyclic dipeptide mimetics. Chemical Communications (Cambridge, England). 1598-9. PMID 12868772 DOI: 10.1039/B302235H  0.726
2003 Ying J, Ahn JM, Jacobsen NE, Brown MF, Hruby VJ. NMR solution structure of the glucagon antagonist [desHis1, desPhe6, Glu9]glucagon amide in the presence of perdeuterated dodecylphosphocholine micelles. Biochemistry. 42: 2825-35. PMID 12627948 DOI: 10.1021/Bi026629R  0.646
2003 Gu X, Cowell S, Ying J, Tang X, Hruby VJ. Synthesis of β-phenyl-δ,ε-unsaturated amino acids and stereoselective introduction of side chain groups into [4,3,0]-bicyclic β-turn dipeptides Tetrahedron Letters. 44: 5863-5866. DOI: 10.1016/S0040-4039(03)01383-2  0.674
2002 Zhang J, Xiong C, Wang W, Ying J, Hruby VJ. Stereoselective bromination-suzuki cross-coupling of dehydroamino acids to form novel reverse-turn peptidomimetics: substituted unsaturated and saturated indolizidinone amino acids. Organic Letters. 4: 4029-32. PMID 12423078 DOI: 10.1021/Ol020160A  0.697
2002 Wang W, Yang J, Ying J, Xiong C, Zhang J, Cai C, Hruby VJ. Stereoselective synthesis of dipeptide beta-turn mimetics: 7-benzyl and 8-phenyl substituted azabicyclo[4.3.0]nonane amino acid esters. The Journal of Organic Chemistry. 67: 6353-60. PMID 12201753 DOI: 10.1021/Jo0203591  0.758
2002 Kavarana MJ, Trivedi D, Cai M, Ying J, Hammer M, Cabello C, Grieco P, Han G, Hruby VJ. Novel cyclic templates of alpha-MSH give highly selective and potent antagonists/agonists for human melanocortin-3/4 receptors. Journal of Medicinal Chemistry. 45: 2644-50. PMID 12036373 DOI: 10.1021/Jm020021Z  0.721
2002 Gu X, Tang X, Cowell S, Ying J, Hruby VJ. A novel strategy toward [6,5]-bicyclic β-turn dipeptide Tetrahedron Letters. 43: 6669-6672. DOI: 10.1016/S0040-4039(02)01338-2  0.673
Show low-probability matches.