| Year |
Citation |
Score |
| 2020 |
Johnson AF, Hou J, Yang H, Shi X, Chen C, Islam MS, Ji T, Cheng J, Birchler JA. Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32178980 DOI: 10.1016/J.Jgg.2020.02.002 |
0.378 |
|
| 2020 |
Shi X, Chen C, Yang H, Hou J, Ji T, Cheng J, Veitia RA, Birchler JA. The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 161-171. PMID 32088896 DOI: 10.1007/978-1-0716-0179-2_12 |
0.412 |
|
| 2018 |
Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA. Global impacts of chromosomal imbalance on gene expression in and other taxa. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429332 DOI: 10.1073/Pnas.1807796115 |
0.4 |
|
| 2017 |
Zhao H, Zeng Z, Koo DH, Gill BS, Birchler JA, Jiang J. Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 28831743 DOI: 10.1007/S10577-017-9564-X |
0.303 |
|
| 2016 |
Su H, Liu Y, Liu YX, Lv Z, Li H, Xie S, Gao Z, Pang J, Wang XJ, Lai J, Birchler JA, Han F. Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin. The Plant Journal : For Cell and Molecular Biology. PMID 27531446 DOI: 10.1111/Tpj.13305 |
0.387 |
|
| 2016 |
Feng C, Yuan J, Wang R, Liu Y, Birchler JA, Han F. Efficient Targeted Genome Modification in Maize Using CRISPR/Cas9 System. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 43: 37-43. PMID 26842992 DOI: 10.1016/J.Jgg.2015.10.002 |
0.301 |
|
| 2014 |
Birchler JA. Facts and artifacts in studies of gene expression in aneuploids and sex chromosomes. Chromosoma. 123: 459-69. PMID 25069760 DOI: 10.1007/S00412-014-0478-5 |
0.326 |
|
| 2014 |
Birchler JA, Veitia RA. The Gene Balance Hypothesis: dosage effects in plants. Methods in Molecular Biology (Clifton, N.J.). 1112: 25-32. PMID 24478005 DOI: 10.1007/978-1-62703-773-0_2 |
0.384 |
|
| 2013 |
Sun L, Johnson AF, Li J, Lambdin AS, Cheng J, Birchler JA. Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 16514-9. PMID 24062456 DOI: 10.1073/Pnas.1316041110 |
0.314 |
|
| 2013 |
Veitia RA, Bottani S, Birchler JA. Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation. Trends in Genetics : Tig. 29: 385-93. PMID 23684842 DOI: 10.1016/J.Tig.2013.04.004 |
0.359 |
|
| 2013 |
Sun L, Johnson AF, Donohue RC, Li J, Cheng J, Birchler JA. Dosage compensation and inverse effects in triple X metafemales of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 7383-8. PMID 23589863 DOI: 10.1073/Pnas.1305638110 |
0.31 |
|
| 2013 |
Birchler JA. Aneuploidy in plants and flies: the origin of studies of genomic imbalance. Seminars in Cell & Developmental Biology. 24: 315-9. PMID 23422884 DOI: 10.1016/J.Semcdb.2013.02.004 |
0.367 |
|
| 2012 |
Birchler JA. Insights from paleogenomic and population studies into the consequences of dosage sensitive gene expression in plants. Current Opinion in Plant Biology. 15: 544-8. PMID 22939251 DOI: 10.1016/J.Pbi.2012.08.005 |
0.323 |
|
| 2012 |
Birchler JA, Veitia RA. Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines. Proceedings of the National Academy of Sciences of the United States of America. 109: 14746-53. PMID 22908297 DOI: 10.1073/Pnas.1207726109 |
0.321 |
|
| 2012 |
Xie W, Birchler JA. Identification of Inverse Regulator-a (Inr-a) as Synonymous with Pre-mRNA Cleavage Complex II Protein (Pcf11) in Drosophila. G3 (Bethesda, Md.). 2: 701-6. PMID 22690379 DOI: 10.1534/G3.112.002071 |
0.485 |
|
| 2010 |
Yu C, Danilova T, Zhang J, Birchler J, Peterson T. Constructing defined chromosome segmental duplications in maize. Cytogenetic and Genome Research. 129: 72-81. PMID 20551616 DOI: 10.1159/000314554 |
0.31 |
|
| 2010 |
Birchler JA. Reflections on studies of gene expression in aneuploids. The Biochemical Journal. 426: 119-23. PMID 20141513 DOI: 10.1042/Bj20091617 |
0.368 |
|
| 2010 |
Birchler JA, Veitia RA. The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. The New Phytologist. 186: 54-62. PMID 19925558 DOI: 10.1111/J.1469-8137.2009.03087.X |
0.345 |
|
| 2010 |
Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 341-53. PMID 19657617 DOI: 10.1007/S00122-009-1113-3 |
0.324 |
|
| 2010 |
Guo M, Birchler JA. Trans-acting dosage effects on the expression of model gene systems in maize aneuploids. Science (New York, N.Y.). 266: 1999-2002. PMID 17836517 DOI: 10.1126/Science.266.5193.1999 |
0.411 |
|
| 2009 |
Kavi HH, Birchler JA. Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization. Bmc Research Notes. 2: 217. PMID 19852816 DOI: 10.1186/1756-0500-2-217 |
0.317 |
|
| 2008 |
Veitia RA, Bottani S, Birchler JA. Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects. Trends in Genetics : Tig. 24: 390-7. PMID 18585818 DOI: 10.1016/J.Tig.2008.05.005 |
0.338 |
|
| 2005 |
Kavi HH, Xie W, Fernandez HR, Birchler JA. Global analysis of siRNA-mediated transcriptional gene silencing. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 1209-12. PMID 16299769 DOI: 10.1002/Bies.20328 |
0.338 |
|
| 2005 |
Birchler JA, Riddle NC, Auger DL, Veitia RA. Dosage balance in gene regulation: biological implications. Trends in Genetics : Tig. 21: 219-26. PMID 15797617 DOI: 10.1016/J.Tig.2005.02.010 |
0.328 |
|
| 2005 |
Auger DL, Gray AD, Ream TS, Kato A, Coe EH, Birchler JA. Nonadditive gene expression in diploid and triploid hybrids of maize Genetics. 169: 389-397. PMID 15489529 DOI: 10.1534/Genetics.104.032987 |
0.305 |
|
| 2004 |
Pal-Bhadra M, Leibovitch BA, Gandhi SG, Chikka MR, Rao M, Bhadra U, Birchler JA, Elgin SC. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science (New York, N.Y.). 303: 669-72. PMID 14752161 DOI: 10.1126/Science.1092653 |
0.339 |
|
| 2004 |
PAL-BHADRA M, BHADRA U, BIRCHLER J. Interrelationship of RNAi and Transcriptional Gene Silencing in Drosophila Cold Spring Harbor Symposia On Quantitative Biology. 69: 1-6. DOI: 10.1101/SQB.2004.69.014 |
0.35 |
|
| 2003 |
Riddle NC, Birchler JA. Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends in Genetics : Tig. 19: 597-600. PMID 14585608 DOI: 10.1016/J.Tig.2003.09.005 |
0.301 |
|
| 2003 |
Birchler JA, Pal-Bhadra M, Bhadra U. Dosage dependent gene regulation and the compensation of the X chromosome in Drosophila males Genetica. 117: 179-190. PMID 12723697 DOI: 10.1023/A:1022935927763 |
0.313 |
|
| 2003 |
Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5 |
0.349 |
|
| 2002 |
Pal-Bhadra M, Bhadra U, Birchler JA. RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila Molecular Cell. 9: 315-327. PMID 11864605 DOI: 10.1016/S1097-2765(02)00440-9 |
0.344 |
|
| 2001 |
Cooper JL, Birchler JA. Developmental impact on trans-acting dosage effects in maize aneuploids Genesis. 31: 64-71. PMID 11668680 DOI: 10.1002/Gene.10006 |
0.303 |
|
| 2001 |
Birchler JA, Bhadra U, Bhadra MP, Auger DL. Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits Developmental Biology. 234: 275-288. PMID 11396999 DOI: 10.1006/Dbio.2001.0262 |
0.403 |
|
| 2000 |
Frolov MV, Benevolenskaya EV, Birchler JA. The oxen gene of drosophila encodes a homolog of subunit 9 of yeast ubiquinol-cytochrome c oxidoreductase complex: Evidence for modulation of gene expression in response to mitochondrial activity Genetics. 156: 1727-1736. PMID 11102369 |
0.412 |
|
| 2000 |
Bhadra U, Pal-Bhadra M, Birchler JA. Histone acetylation and gene expression analysis of Sex lethal mutants in drosophila Genetics. 155: 753-763. PMID 10835396 |
0.363 |
|
| 2000 |
Benevolenskaya EV, Frolov MV, Birchler JA. Kruppel homolog (Kr h) is a dosage-dependent modifier of gene expression in Drosophila Genetical Research. 75: 137-142. PMID 10816971 DOI: 10.1017/S0016672399004437 |
0.446 |
|
| 2000 |
Birchler JA, Pal Bhadra M, Bhadra U. Making noise about silence: Repression of repeated genes in animals Current Opinion in Genetics and Development. 10: 211-216. PMID 10753783 DOI: 10.1016/S0959-437X(00)00065-4 |
0.385 |
|
| 1999 |
Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression of nonhomologous transgenes in Drosophila involves mutually related endogenous sequences Cell. 99: 35-46. PMID 10520992 DOI: 10.1016/S0092-8674(00)80060-4 |
0.356 |
|
| 1998 |
Benevolenskaya EV, Frolov MV, Birchler JA. The sugarless mutation affects the expression of the white eye color gene in Drosophila melanogaster Molecular and General Genetics. 260: 131-143. PMID 9862465 DOI: 10.1007/S004380050879 |
0.436 |
|
| 1998 |
Frolov MV, Birchler JA. Mutation in P0, a dual function ribosomal protein/apurinic/apyrimidinic endonuclease, modifies gene expression and position effect variegation in Drosophila Genetics. 150: 1487-1495. PMID 9832526 |
0.404 |
|
| 1998 |
Pal Bhadra M, Bhadra U, Birchler JA. Role of multiple trans-acting regulators in modifying the effect of the retrotransposon copia on host gene expression in Drosophila Molecular and General Genetics. 259: 198-206. PMID 9747711 DOI: 10.1007/S004380050805 |
0.476 |
|
| 1998 |
Frolov MV, Benevolenskaya EV, Birchler JA. Regena (Rga), a Drosophila homolog of the global negative transcriptional regulator CDC36 (NOT2) from yeast, modifies gene expression and suppresses position effect variegation Genetics. 148: 317-329. PMID 9475742 |
0.429 |
|
| 1998 |
Bhadra U, Pal Bhadra M, Birchler JA. Interactions among dosage-dependent trans-acting modifiers of gene expression and position-effect variegation in Drosophila Genetics. 150: 251-263. |
0.357 |
|
| 1997 |
Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression in Drosophila: Gene silencing of Alcohol dehydrogenase by white-Adh transgenes is Polycomb dependent Cell. 90: 479-490. PMID 9267028 DOI: 10.1016/S0092-8674(00)80508-5 |
0.389 |
|
| 1997 |
Bhadra U, Pal-Bhadra M, Birchler JA. A sex-influenced modifier in Drosophila that affects a broad spectrum of target loci including the histone repeats Genetics. 146: 903-917. PMID 9215896 |
0.448 |
|
| 1997 |
Bhadra U, Pal-Bhadra M, Birchler JA. A trans-acting modifier causing extensive overexpression of genes in Drosophila melanogaster Molecular and General Genetics. 254: 621-634. PMID 9202378 DOI: 10.1007/S004380050460 |
0.456 |
|
| 1996 |
Bhadra U, Birchler JA. Characterization of a sex-influenced modifier of gene expression and suppressor of position-effect variegation in Drosophila. Molecular & General Genetics : Mgg. 250: 601-13. PMID 8676863 DOI: 10.1007/Bf02174448 |
0.442 |
|
| 1994 |
Csink AK, Linsk R, Birchler JA. Mosaic suppressor, a gene in Drosophila that modifies retrotransposon expression and interacts with zeste. Genetics. 136: 573-83. PMID 8150284 |
0.639 |
|
| 1994 |
Csink AK, Linsk R, Birchler JA. The Lighten up (Lip) gene of Drosophila melanogaster, a modifier of retroelement expression, position effect variegation and white locus insertion alleles. Genetics. 138: 153-63. PMID 8001783 |
0.657 |
|
| 1993 |
Sabl JF, Birchler JA. Dosage dependent modifiers of white alleles in Drosophila melanogaster. Genetical Research. 62: 15-22. PMID 8405989 DOI: 10.1017/S0016672300031517 |
0.594 |
|
| 1992 |
Birchler JA. Expression of cis-regulatory mutations of the white locus in metafemales of Drosophila melanogaster. Genetical Research. 59: 11-8. PMID 1572532 DOI: 10.1017/S0016672300030123 |
0.34 |
|
| 1990 |
Rabinow L, Birchler J. Interactions among modifiers of retrotransposon-induced alleles of the white locus of Drosophila melanogaster. Genetical Research. 55: 141-51. PMID 2168335 DOI: 10.1017/S0016672300025453 |
0.36 |
|
| 1989 |
Birchler JA, Hiebert JC, Rabinow L. Interaction of the mottler of white with transposable element alleles at the white locus in Drosophila melanogaster. Genes & Development. 3: 73-84. PMID 2540060 DOI: 10.1101/Gad.3.1.73 |
0.433 |
|
| 1989 |
Rabinow L, Birchler JA. A dosage-sensitive modifier of retrotransposon-induced alleles of the Drosophila white locus. The Embo Journal. 8: 879-889. DOI: 10.1002/J.1460-2075.1989.Tb03449.X |
0.437 |
|
| 1984 |
Birchler JA. Genetic analysis of the sexual dimorphism of glass in Drosophila melanogaster Genetical Research. 44: 125-132. DOI: 10.1017/S0016672300026331 |
0.337 |
|
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