Paul C. Blainey, Ph.D. - Publications

Affiliations: 
2007 Harvard University, Cambridge, MA, United States 
Area:
room-temperature single-molecule spectroscopy

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Kanjilal S, Sater MRA, Thayer M, Lagoudas GK, Kim S, Blainey PC, Grad YH. Trends in antibiotic susceptibility in Staphylococcus aureus in Boston, Massachusetts, 2000-2014. Journal of Clinical Microbiology. PMID 29093105 DOI: 10.1128/JCM.01160-17  0.68
2017 Kim S, De Jonghe J, Kulesa AB, Feldman D, Vatanen T, Bhattacharyya RP, Berdy B, Gomez J, Nolan J, Epstein S, Blainey PC. High-throughput automated microfluidic sample preparation for accurate microbial genomics. Nature Communications. 8: 13919. PMID 28128213 DOI: 10.1038/ncomms13919  0.68
2016 Xu L, Brito IL, Alm EJ, Blainey PC. Virtual microfluidics for digital quantification and single-cell sequencing. Nature Methods. PMID 27479330 DOI: 10.1038/nmeth.3955  0.68
2016 Xiong K, Blainey PC. Molecular sled sequences are common in mammalian proteins. Nucleic Acids Research. PMID 26857546 DOI: 10.1093/nar/gkw035  0.68
2016 Mangel WF, McGrath WJ, Xiong K, Graziano V, Blainey PC. Molecular sled is an eleven-amino acid vehicle facilitating biochemical interactions via sliding components along DNA. Nature Communications. 7: 10202. PMID 26831565 DOI: 10.1038/ncomms10202  0.68
2016 Kimmerling RJ, Lee Szeto G, Li JW, Genshaft AS, Kazer SW, Payer KR, de Riba Borrajo J, Blainey PC, Irvine DJ, Shalek AK, Manalis SR. A microfluidic platform enabling single-cell RNA-seq of multigenerational lineages. Nature Communications. 7: 10220. PMID 26732280 DOI: 10.1038/ncomms10220  0.68
2014 Bennett RD, Ysasi AB, Belle JM, Wagner WL, Konerding MA, Blainey PC, Pyne S, Mentzer SJ. Laser microdissection of the alveolar duct enables single-cell genomic analysis. Frontiers in Oncology. 4: 260. PMID 25309876 DOI: 10.3389/fonc.2014.00260  0.68
2014 Blainey PC, Quake SR. Dissecting genomic diversity, one cell at a time Nature Methods. 11: 19-21. PMID 24524132 DOI: 10.1038/nmeth.2783  0.68
2013 Landry ZC, Giovanonni SJ, Quake SR, Blainey PC. Optofluidic cell selection from complex microbial communities for single-genome analysis Methods in Enzymology. 531: 61-90. PMID 24060116 DOI: 10.1016/B978-0-12-407863-5.00004-6  0.68
2013 Dodsworth JA, Blainey PC, Murugapiran SK, Swingley WD, Ross CA, Tringe SG, Chain PS, Scholz MB, Lo CC, Raymond J, Quake SR, Hedlund BP. Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. Nature Communications. 4: 1854. PMID 23673639 DOI: 10.1038/ncomms2884  0.68
2013 Blainey PC, Graziano V, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF. Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: IV. viral proteinase slides along DNA to locate and process its substrates. The Journal of Biological Chemistry. 288: 2092-102. PMID 23043138 DOI: 10.1074/jbc.M112.407460  0.68
2013 Graziano V, Luo G, Blainey PC, Pérez-Berná AJ, McGrath WJ, Flint SJ, San Martín C, Xie XS, Mangel WF. Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: II. adenovirus proteinase is activated in an unusual one-dimensional biochemical reaction. The Journal of Biological Chemistry. 288: 2068-80. PMID 23043137 DOI: 10.1074/jbc.M112.407312  0.68
2013 Graziano V, McGrath WJ, Suomalainen M, Greber UF, Freimuth P, Blainey PC, Luo G, Xie XS, Mangel WF. Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus. The Journal of Biological Chemistry. 288: 2059-67. PMID 23043136 DOI: 10.1074/jbc.M112.377150  0.68
2012 Marshall IPG, Blainey PC, Spormann AM, Quake SR. A single-cell genome for Thiovulum sp. Applied and Environmental Microbiology. 78: 8555-8563. PMID 23023751 DOI: 10.1128/AEM.02314-12  0.68
2012 Blainey PC, Milla CE, Cornfield DN, Quake SR. Quantitative analysis of the human airway microbial ecology reveals a pervasive signature for cystic fibrosis. Science Translational Medicine. 4: 153ra130. PMID 23019655 DOI: 10.1126/scitranslmed.3004458  0.68
2012 Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC. Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB). Genome Research. 22: 1107-19. PMID 22434425 DOI: 10.1101/gr.131482.111  0.68
2011 Youssef NH, Blainey PC, Quake SR, Elshahed MS. Partial genome assembly for a candidate division OP11 single cell from an anoxic spring (Zodletone spring, Oklahoma) Applied and Environmental Microbiology. 77: 7804-7814. PMID 21908640 DOI: 10.1128/AEM.06059-11  0.68
2011 Blainey PC, Quake SR. Digital MDA for enumeration of total nucleic acid contamination Nucleic Acids Research. 39: e19. PMID 21071419 DOI: 10.1093/nar/gkq1074  0.68
2011 Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR. Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis Plos One. 6. DOI: 10.1371/journal.pone.0016626  0.68
2009 Blainey PC, Luo G, Kou SC, Mangel WF, Verdine GL, Bagchi B, Xie XS. Nonspecifically bound proteins spin while diffusing along DNA. Nature Structural & Molecular Biology. 16: 1224-9. PMID 19898474 DOI: 10.1038/nsmb.1716  0.68
2009 White RA, Blainey PC, Fan HC, Quake SR. Digital PCR provides sensitive and absolute calibration for high throughput sequencing. Bmc Genomics. 10: 116. PMID 19298667 DOI: 10.1186/1471-2164-10-116  0.68
2008 Bagchi B, Blainey PC, Xie XS. Diffusion constant of a nonspecifically bound protein undergoing curvilinear motion along DNA. The Journal of Physical Chemistry. B. 112: 6282-4. PMID 18321088 DOI: 10.1021/jp077568f  0.68
2007 Kim S, Blainey PC, Schroeder CM, Xie XS. Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA. Nature Methods. 4: 397-9. PMID 17435763 DOI: 10.1038/nmeth1037  0.68
2006 Blainey PC, van Oijen AM, Banerjee A, Verdine GL, Xie XS. A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. Proceedings of the National Academy of Sciences of the United States of America. 103: 5752-7. PMID 16585517 DOI: 10.1073/pnas.0509723103  0.68
2005 Schroeder CM, Kim S, Blainey PC, Xie XS. Single molecule kinetics of reverse transcriptase Aiche Annual Meeting, Conference Proceedings. 8076.  0.68
2003 van Oijen AM, Blainey PC, Crampton DJ, Richardson CC, Ellenberger T, Xie XS. Single-molecule kinetics of lambda exonuclease reveal base dependence and dynamic disorder. Science (New York, N.Y.). 301: 1235-8. PMID 12947199 DOI: 10.1126/science.1084387  0.68
2001 Blainey PC, Reid PJ. FTIR studies of intermolecular hydrogen bonding in halogenated ethanols. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 57: 2763-74. PMID 11789877 DOI: 10.1016/S1386-1425(01)00507-8  0.68
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