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Jonathan I. Gent, Ph.D. - Publications

Affiliations: 
2009 Stanford University, Palo Alto, CA 
Area:
RNAi
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zeng Y, Somers J, Bell HS, Vejlupkova Z, Kelly Dawe R, Fowler JE, Nelms B, Gent JI. Potent pollen gene regulation by DNA glycosylases in maize. Nature Communications. 15: 8352. PMID 39333110 DOI: 10.1038/s41467-024-52620-y  0.318
2024 Zeng Y, Somers J, Bell HS, Dawe RK, Fowler JE, Nelms B, Gent JI. Potent pollen gene regulation by DNA glycosylases in maize. Biorxiv : the Preprint Server For Biology. PMID 38405940 DOI: 10.1101/2024.02.13.580204  0.342
2024 Hövel I, Bader R, Louwers M, Haring M, Peek K, Gent JI, Stam M. RNA-directed DNA methylation mutants reduce histone at the paramutated maize booster1 enhancer. Plant Physiology. PMID 38366582 DOI: 10.1093/plphys/kiae072  0.429
2022 Gent JI, Higgins KM, Swentowsky KW, Fu FF, Zeng Y, Kim DW, Dawe RK, Springer NM, Anderson SN. The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm. The Plant Cell. PMID 35775949 DOI: 10.1093/plcell/koac199  0.366
2021 Li C, Gent JI, Xu H, Fu H, Russell SD, Sundaresan V. Resetting of the 24-nt siRNA landscape in rice zygotes. Genome Research. PMID 34949668 DOI: 10.1101/gr.275981.121  0.413
2021 Hufford MB, Seetharam AS, Woodhouse MR, Chougule KM, Ou S, Liu J, Ricci WA, Guo T, Olson A, Qiu Y, Della Coletta R, Tittes S, Hudson AI, Marand AP, Wei S, ... ... Gent JI, et al. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes. Science (New York, N.Y.). 373: 655-662. PMID 34353948 DOI: 10.1126/science.abg5289  0.308
2020 Swentowsky KW, Gent JI, Lowry EG, Schubert V, Ran X, Tseng KF, Harkess AE, Qiu W, Dawe RK. Distinct kinesin motors drive two types of maize neocentromeres. Genes & Development. PMID 32820038 DOI: 10.1101/Gad.340679.120  0.387
2020 Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, et al. Gapless assembly of maize chromosomes using long-read technologies. Genome Biology. 21: 121. PMID 32434565 DOI: 10.1186/S13059-020-02029-9  0.337
2020 Li C, Xu H, Fu FF, Russell SD, Sundaresan V, Gent JI. Genome-wide redistribution of 24-nt siRNAs in rice gametes. Genome Research. PMID 31896557 DOI: 10.1101/Gr.253674.119  0.535
2018 Fu FF, Dawe RK, Gent JI. Loss of RNA-directed DNA Methylation in Maize Chromomethylase and DDM1-type Nucleosome Remodeler Mutants. The Plant Cell. PMID 29884624 DOI: 10.1105/Tpc.18.00053  0.507
2018 Dawe RK, Lowry EG, Gent JI, Stitzer MC, Swentowsky KW, Higgins DM, Ross-Ibarra J, Wallace JG, Kanizay LB, Alabady M, Qiu W, Tseng KF, Wang N, Gao Z, Birchler JA, et al. A Kinesin-14 Motor Activates Neocentromeres to Promote Meiotic Drive in Maize. Cell. PMID 29628142 DOI: 10.1016/J.Cell.2018.03.009  0.394
2017 Oka R, Zicola J, Weber B, Anderson SN, Hodgman C, Gent JI, Wesselink JJ, Springer NM, Hoefsloot HCJ, Turck F, Stam M. Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize. Genome Biology. 18: 137. PMID 28732548 DOI: 10.1186/S13059-017-1273-4  0.445
2017 Gent JI, Wang N, Dawe RK. Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives. Genome Biology. 18: 121. PMID 28637491 DOI: 10.1186/S13059-017-1249-4  0.398
2017 Jiao Y, Peluso P, Shi J, Liang T, Stitzer MC, Wang B, Campbell MS, Stein JC, Wei X, Chin CS, Guill K, Regulski M, Kumari S, Olson A, Gent J, et al. Improved maize reference genome with single-molecule technologies. Nature. PMID 28605751 DOI: 10.1038/Nature22971  0.403
2015 Zhao H, Zhu X, Wang K, Gent JI, Zhang W, Dawe RK, Jiang J. Gene Expression and Chromatin Modifications Associated with Maize Centromeres. G3 (Bethesda, Md.). PMID 26564952 DOI: 10.1534/G3.115.022764  0.438
2015 Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553984 DOI: 10.1073/Pnas.1514680112  0.531
2015 Gent JI, Wang K, Jiang J, Dawe RK. Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres. Genetics. PMID 26063660 DOI: 10.1534/Genetics.115.177360  0.344
2014 Gent JI, Madzima TF, Bader R, Kent MR, Zhang X, Stam M, McGinnis KM, Dawe RK. Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation. The Plant Cell. 26: 4903-17. PMID 25465407 DOI: 10.1105/Tpc.114.130427  0.602
2013 Gent JI, Ellis NA, Guo L, Harkess AE, Yao Y, Zhang X, Dawe RK. CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Research. 23: 628-37. PMID 23269663 DOI: 10.1101/Gr.146985.112  0.542
2012 Eichten SR, Ellis NA, Makarevitch I, Yeh CT, Gent JI, Guo L, McGinnis KM, Zhang X, Schnable PS, Vaughn MW, Dawe RK, Springer NM. Spreading of heterochromatin is limited to specific families of maize retrotransposons. Plos Genetics. 8: e1003127. PMID 23271981 DOI: 10.1371/Journal.Pgen.1003127  0.408
2012 Gent JI, Dawe RK. RNA as a structural and regulatory component of the centromere. Annual Review of Genetics. 46: 443-53. PMID 22974300 DOI: 10.1146/Annurev-Genet-110711-155419  0.549
2012 Gent JI, Dong Y, Jiang J, Dawe RK. Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications. Nucleic Acids Research. 40: 1550-60. PMID 22058126 DOI: 10.1093/Nar/Gkr862  0.535
2011 Blanchard D, Parameswaran P, Lopez-Molina J, Gent J, Saynuk JF, Fire A. On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans Rna Biology. 8: 458-467. PMID 21519199 DOI: 10.4161/Rna.8.3.14657  0.577
2011 Gent JI, Schneider KL, Topp CN, Rodriguez C, Presting GG, Dawe RK. Distinct influences of tandem repeats and retrotransposons on CENH3 nucleosome positioning. Epigenetics & Chromatin. 4: 3. PMID 21352520 DOI: 10.1186/1756-8935-4-3  0.379
2011 Lamm AT, Stadler MR, Zhang H, Gent JI, Fire AZ. Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome Genome Research. 21: 265-275. PMID 21177965 DOI: 10.1101/Gr.108845.110  0.619
2010 Gent JI, Lamm AT, Pavelec DM, Maniar JM, Parameswaran P, Tao L, Kennedy S, Fire AZ. Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma Molecular Cell. 37: 679-689. PMID 20116306 DOI: 10.1016/J.Molcel.2010.01.012  0.606
2009 Gent JI, Schvarzstein M, Villeneuve AM, Gu SG, Jantsch V, Fire AZ, Baudrimont A. A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference Genetics. 183: 1297-1314. PMID 19805814 DOI: 10.1534/Genetics.109.109686  0.633
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