Ilya J. Finkelstein, Ph.D. - Publications

Affiliations: 
2007 Stanford University, Palo Alto, CA 
Area:
molecular dynamics

27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Myler LR, Gallardo IF, Zhou Y, Gong F, Yang SH, Wold MS, Miller KM, Paull TT, Finkelstein IJ. Single-molecule imaging reveals the mechanism of Exo1 regulation by single-stranded DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 26884156 DOI: 10.1073/pnas.1516674113  1
2016 Brown MW, Kim Y, Williams GM, Huck JD, Surtees JA, Finkelstein IJ. Dynamic DNA binding licenses a repair factor to bypass roadblocks in search of DNA lesions. Nature Communications. 7: 10607. PMID 26837705 DOI: 10.1038/ncomms10607  1
2015 Gallardo IF, Pasupathy P, Brown M, Manhart CM, Neikirk DP, Alani E, Finkelstein IJ. High-Throughput Universal DNA Curtain Arrays for Single-Molecule Fluorescence Imaging. Langmuir : the Acs Journal of Surfaces and Colloids. 31: 10310-7. PMID 26325477 DOI: 10.1021/acs.langmuir.5b02416  1
2014 Spivey EC, Xhemalce B, Shear JB, Finkelstein IJ. 3D-printed microfluidic microdissector for high-throughput studies of cellular aging. Analytical Chemistry. 86: 7406-12. PMID 24992972 DOI: 10.1021/ac500893a  1
2014 Robison AD, Finkelstein IJ. High-throughput single-molecule studies of protein-DNA interactions. Febs Letters. 588: 3539-46. PMID 24859086 DOI: 10.1016/j.febslet.2014.05.021  1
2014 Lee JY, Finkelstein IJ, Arciszewska LK, Sherratt DJ, Greene EC. Single-molecule imaging of FtsK translocation reveals mechanistic features of protein-protein collisions on DNA. Molecular Cell. 54: 832-43. PMID 24768536 DOI: 10.1016/j.molcel.2014.03.033  1
2014 Robison AD, Finkelstein IJ. Rapid prototyping of multichannel microfluidic devices for single-molecule DNA curtain imaging. Analytical Chemistry. 86: 4157-63. PMID 24734940 DOI: 10.1021/ac500267v  1
2014 Spivey EC, Finkelstein IJ. From cradle to grave: high-throughput studies of aging in model organisms. Molecular Biosystems. 10: 1658-67. PMID 24535099 DOI: 10.1039/c3mb70604d  1
2013 Wang F, Redding S, Finkelstein IJ, Gorman J, Reichman DR, Greene EC. The promoter-search mechanism of Escherichia coli RNA polymerase is dominated by three-dimensional diffusion. Nature Structural & Molecular Biology. 20: 174-81. PMID 23262491 DOI: 10.1038/nsmb.2472  1
2012 Gibb B, Silverstein TD, Finkelstein IJ, Greene EC. Single-stranded DNA curtains for real-time single-molecule visualization of protein-nucleic acid interactions. Analytical Chemistry. 84: 7607-12. PMID 22950646 DOI: 10.1021/ac302117z  1
2012 Lee JY, Finkelstein IJ, Crozat E, Sherratt DJ, Greene EC. Single-molecule imaging of DNA curtains reveals mechanisms of KOPS sequence targeting by the DNA translocase FtsK. Proceedings of the National Academy of Sciences of the United States of America. 109: 6531-6. PMID 22493241 DOI: 10.1073/pnas.1201613109  1
2009 Finkelstein IJ, Greene EC. XPD helicase speeds through a molecular traffic jam. Molecular Cell. 35: 549-50. PMID 19748351 DOI: 10.1016/j.molcel.2009.08.012  0.01
2009 Ishikawa H, Kim S, Finkelstein IJ, Fayer MD. Ultrafast 2D-IR vibration echo spectroscopy of proteins Advances in Biomedical Spectroscopy. 2: 79-103. DOI: 10.3233/978-1-60750-045-2-79  1
2008 Finkelstein IJ, Greene EC. Single molecule studies of homologous recombination. Molecular Biosystems. 4: 1094-104. PMID 18931785 DOI: 10.1039/b811681b  0.01
2007 Ishikawa H, Finkelstein IJ, Kim S, Kwak K, Chung JK, Wakasugi K, Massari AM, Fayer MD. Neuroglobin dynamics observed with ultrafast 2D-IR vibrational echo spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 16116-21. PMID 17916624 DOI: 10.1073/pnas.0707718104  1
2007 Kwak K, Park S, Finkelstein IJ, Fayer MD. Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: a new approach. The Journal of Chemical Physics. 127: 124503. PMID 17902917 DOI: 10.1063/1.2772269  1
2007 Finkelstein IJ, Massari AM, Fayer MD. Viscosity-dependent protein dynamics. Biophysical Journal. 92: 3652-62. PMID 17446536 DOI: 10.1529/biophysj.106.093708  1
2007 Finkelstein IJ, Zheng J, Ishikawa H, Kim S, Kwak K, Fayer MD. Probing dynamics of complex molecular systems with ultrafast 2D IR vibrational echo spectroscopy. Physical Chemistry Chemical Physics : Pccp. 9: 1533-49. PMID 17429547 DOI: 10.1039/b618158a  1
2007 Finkelstein IJ, Ishikawa H, Kim S, Massari AM, Fayer MD. Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 2637-42. PMID 17296942 DOI: 10.1073/pnas.0610027104  1
2006 Massari AM, McClain BL, Finkelstein IJ, Lee AP, Reynolds HL, Bren KL, Fayer MD. Cytochrome c552 mutants: structure and dynamics at the active site probed by multidimensional NMR and vibration echo spectroscopy. The Journal of Physical Chemistry. B. 110: 18803-10. PMID 16986870 DOI: 10.1021/jp054959q  1
2006 Massari AM, Finkelstein IJ, Fayer MD. Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy. Journal of the American Chemical Society. 128: 3990-7. PMID 16551107 DOI: 10.1021/ja058745y  1
2005 Finkelstein IJ, Goj A, McClain BL, Massari AM, Merchant KA, Loring RF, Fayer MD. Ultrafast dynamics of myoglobin without the distal histidine: stimulated vibrational echo experiments and molecular dynamics simulations. The Journal of Physical Chemistry. B. 109: 16959-66. PMID 16853158 DOI: 10.1021/jp0517201  1
2005 Massari AM, Finkelstein IJ, McClain BL, Goj A, Wen X, Bren KL, Loring RF, Fayer MD. The influence of aqueous versus glassy solvents on protein dynamics: vibrational echo experiments and molecular dynamics simulations. Journal of the American Chemical Society. 127: 14279-89. PMID 16218622 DOI: 10.1021/ja053627w  1
2004 McClain BL, Finkelstein IJ, Fayer MD. Dynamics of hemoglobin in human erythrocytes and in solution: influence of viscosity studied by ultrafast vibrational echo experiments. Journal of the American Chemical Society. 126: 15702-10. PMID 15571392 DOI: 10.1021/ja0454790  1
2004 Finkelstein IJ, McClain BL, Fayer MD. Fifth-order contributions to ultrafast spectrally resolved vibrational echoes: heme-CO proteins. The Journal of Chemical Physics. 121: 877-85. PMID 15260618 DOI: 10.1063/1.1758940  1
2004 McClain BL, Finkelstein IJ, Fayer MD. Vibrational echo experiments on red blood cells: Comparison of the dynamics of cytoplasmic and aqueous hemoglobin Chemical Physics Letters. 392: 324-329. DOI: 10.1016/j.cplett.2004.05.080  1
2003 Merchant KA, Noid WG, Akiyama R, Finkelstein IJ, Goun A, McClain BL, Loring RF, Fayer MD. Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations. Journal of the American Chemical Society. 125: 13804-18. PMID 14599220 DOI: 10.1021/ja035654x  1
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