Joshua S. Grimley, Ph.D. - Related publications

2007 Stanford University, Palo Alto, CA 
biological chemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Herrera NG, Morano NC, Celikgil A, Georgiev GI, Malonis RJ, Lee JH, Tong K, Vergnolle O, Massimi AB, Yen LY, Noble AJ, Kopylov M, Bonanno JB, Garrett-Thomson SC, Hayes DB, et al. Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis. Acs Omega. 6: 85-102. PMID 33458462 DOI: 10.1021/acsomega.0c03512   
2021 Prasanna P, Kumar R, Singh VK, Upadhyay A. Cloning, purification, and homology modeling of Histone deacetylase in Leishmania donovani. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104738. PMID 33516971 DOI: 10.1016/j.meegid.2021.104738   
2021 LeBlanc EV, Shekhar-Guturja T, Whitesell L, Cowen LE. Fluorescence Polarization-Based Measurement of Protein-Ligand Interaction in Fungal Cell Lysates. Current Protocols. 1: e17. PMID 33484500 DOI: 10.1002/cpz1.17   
2021 Huang L, Qu X, Chen Y, Xu W, Huang C. Sandwiched-fusion strategy facilitates recombinant production of small labile proteins. Protein Science : a Publication of the Protein Society. PMID 33433908 DOI: 10.1002/pro.4024   
2021 Araujo SA, Martins GH, Quel NG, Aragão AZB, Morea EGO, Borges JC, Houry WA, Cano MIN, Ramos CHI. Purification and characterization of a novel and conserved TPR-domain protein that binds both Hsp90 and Hsp70 and is expressed in all developmental stages of Leishmania major. Biochimie. PMID 33421500 DOI: 10.1016/j.biochi.2020.12.017   
2021 Mehboob MZ, Lang M. Structure, function, and pathology of protein O-glucosyltransferases. Cell Death & Disease. 12: 71. PMID 33436558 DOI: 10.1038/s41419-020-03314-y   
2021 Cao W, Qin X, Wang Y, Dai Z, Dai X, Wang H, Xuan W, Zhang Y, Liu Y, Liu T. A general supramolecular approach to regulate protein functions by cucurbit[7]uril and unnatural amino acid recognition. Angewandte Chemie (International Ed. in English). PMID 33580548 DOI: 10.1002/anie.202100916   
2021 Hao J. Thermal Shift Assay for Exploring Interactions Between Fatty Acid-Binding Protein and Inhibitors. Methods in Molecular Biology (Clifton, N.J.). 2261: 395-409. PMID 33421003 DOI: 10.1007/978-1-0716-1186-9_24   
2021 Salekeen R, Barua J, Shaha PR, Islam KMD, Islam ME, Billah MM, Rahman SMM. Marine phycocompound screening reveals a potential source of novel senotherapeutics. Journal of Biomolecular Structure & Dynamics. 1-15. PMID 33533325 DOI: 10.1080/07391102.2021.1877822   
2021 Sun C, Zhang J, Wei J, Zheng X, Zhao X, Fang Z, Xu D, Yuan H, Liu Y. Screening, simulation, and optimization design of small molecule inhibitors of the SARS-CoV-2 spike glycoprotein. Plos One. 16: e0245975. PMID 33493227 DOI: 10.1371/journal.pone.0245975   
2021 Schipper S, Wu H, Furdui CM, Poole LB, Delahunty CM, Park R, Yates JR, Becker K, Przyborski JM. Identification of sulfenylation patterns in trophozoite stage Plasmodium falciparum using a non-dimedone based probe. Molecular and Biochemical Parasitology. 111362. PMID 33513391 DOI: 10.1016/j.molbiopara.2021.111362   
2021 Hu Y, Cheng K, He L, Zhang X, Jiang B, Jiang L, Li C, Wang G, Yang Y, Liu M. NMR-Based Methods for Protein Analysis. Analytical Chemistry. PMID 33439619 DOI: 10.1021/acs.analchem.0c03830   
2021 Wang ZH, Ke F, Zhang QY, Gui JF. Structural and Functional Diversity among Five RING Finger Proteins from Carassius Auratus Herpesvirus (CaHV). Viruses. 13. PMID 33562288 DOI: 10.3390/v13020254   
2021 Abdelkader EH, Qianzhu H, Tan YJ, Adams LA, Huber T, Otting G. Genetic Encoding of -(((Trimethylsilyl)methoxy)carbonyl)-l-lysine for NMR Studies of Protein-Protein and Protein-Ligand Interactions. Journal of the American Chemical Society. PMID 33399460 DOI: 10.1021/jacs.0c11971   
2021 Thole JF, Fadero TC, Bonin JP, Stadmiller SS, Giudice JA, Pielak GJ. Oocytes for Eukaryotic In-Cell NMR. Biochemistry. PMID 33534998 DOI: 10.1021/acs.biochem.0c00922   
2021 Meignié A, Combredet C, Santolini M, Kovács IA, Douché T, Gianetto QG, Eun H, Matondo M, Jacob Y, Grailhe R, Tangy F, Komarova AV. Proteomic Analysis Uncovers Measles Virus Protein C Interaction with p65/iASPP Protein Complex. Molecular & Cellular Proteomics : McP. 100049. PMID 33515806 DOI: 10.1016/j.mcpro.2021.100049   
2021 Opo FADM, Rahman MM, Ahammad F, Ahmed I, Bhuiyan MA, Asiri AM. Structure based pharmacophore modeling, virtual screening, molecular docking and ADMET approaches for identification of natural anti-cancer agents targeting XIAP protein. Scientific Reports. 11: 4049. PMID 33603068 DOI: 10.1038/s41598-021-83626-x   
2021 Schulte C, Khayenko V, Nordblom NF, Tippel F, Peck V, Gupta AJ, Maric HM. High-throughput determination of protein affinities using unmodified peptide libraries in nanomolar scale. Iscience. 24: 101898. PMID 33364586 DOI: 10.1016/j.isci.2020.101898   
2021 Rasheed MA, Iqbal MN, Saddick S, Ali I, Khan FS, Kanwal S, Ahmed D, Ibrahim M, Afzal U, Awais M. Identification of Lead Compounds against Scm (fms10) in Using Computer Aided Drug Designing. Life (Basel, Switzerland). 11. PMID 33494233 DOI: 10.3390/life11020077   
2021 Kumar Verma A, Kumar V, Singh S, Goswami BC, Camps I, Sekar A, Yoon S, Lee KW. Repurposing potential of Ayurvedic medicinal plants derived active principles against SARS-CoV-2 associated target proteins revealed by molecular docking, molecular dynamics and MM-PBSA studies. Biomedicine & Pharmacotherapy = Biomedecine & Pharmacotherapie. 137: 111356. PMID 33561649 DOI: 10.1016/j.biopha.2021.111356   
2021 Kuljanin M, Mitchell DC, Schweppe DK, Gikandi AS, Nusinow DP, Bulloch NJ, Vinogradova EV, Wilson DL, Kool ET, Mancias JD, Cravatt BF, Gygi SP. Reimagining high-throughput profiling of reactive cysteines for cell-based screening of large electrophile libraries. Nature Biotechnology. PMID 33398154 DOI: 10.1038/s41587-020-00778-3   
2021 Wang X, He L, Zhao Q, Chen H, Shi Y, Fan J, Chen Y, Huang A. Protein function analysis of germinated Moringa oleifera seeds, and purification and characterization of their milk-clotting peptidase. International Journal of Biological Macromolecules. PMID 33434550 DOI: 10.1016/j.ijbiomac.2021.01.026   
2021 Zhang J, Chen Q, Liu B. NCBRPred: predicting nucleic acid binding residues in proteins based on multilabel learning. Briefings in Bioinformatics. PMID 33454744 DOI: 10.1093/bib/bbaa397   
2021 Ward TL, Tai W, Morton SU, Impens F, VanDamme P, Van Haver D, Timmerman E, Venturini G, Zhang K, Jang MY, Willcox JA, Haghighi A, Gelb BD, Chung WK, Goldmuntz E, et al. Mechanisms of Congenital Heart Disease Caused by NAA15 Haploinsufficiency. Circulation Research. PMID 33557580 DOI: 10.1161/CIRCRESAHA.120.316966   
2021 Huang LF, Sinaga DS, Tan CC, Hsieh SM, Huang CH. Expression of Recombinant Human Octamer-Binding Transcription Factor 4 in Rice Suspension Cells. International Journal of Molecular Sciences. 22. PMID 33573352 DOI: 10.3390/ijms22031409   
2021 Skruber K, Read TA, Vitriol EA. Delivering defined amounts of purified protein with high precision into living cells. Star Protocols. 2: 100272. PMID 33511357 DOI: 10.1016/j.xpro.2020.100272   
2021 Campbell KL, Haspel N, Gath C, Kurniatash N, Nouduri Akkiraju I, Stuffers N, Vadher U. Protein Hormone Fragmentation in Intercellular Signaling: Hormones as Nested Information Systems†. Biology of Reproduction. PMID 33403392 DOI: 10.1093/biolre/ioaa234   
2021 Osire T, Qiao Z, Yang T, Xu M, Zhang X, Rao Z. Biochemical Characterization and Structural Insight into Interaction and Conformation Mechanisms of Lysine Decarboxylase (SmcadA). Molecules (Basel, Switzerland). 26. PMID 33572696 DOI: 10.3390/molecules26030697   
2021 Spagnolli G, Massignan T, Astolfi A, Biggi S, Rigoli M, Brunelli P, Libergoli M, Ianeselli A, Orioli S, Boldrini A, Terruzzi L, Bonaldo V, Maietta G, Lorenzo NL, Fernandez LC, et al. Pharmacological inactivation of the prion protein by targeting a folding intermediate. Communications Biology. 4: 62. PMID 33437023 DOI: 10.1038/s42003-020-01585-x   
2021 Pair FS, Yacoubian TA. 14-3-3 Proteins: Novel Pharmacological Targets in Neurodegenerative Diseases. Trends in Pharmacological Sciences. PMID 33518287 DOI: 10.1016/   
2021 Zhang YW, Gallagher K, Angelis D, Rominger D, Scherle P, Vaddi K. Human Plasma In-Cell Western Assays-An In vitro Predictor for In vivo Pharmacology in Oncology Drug Discovery. Current Protocols. 1: e51. PMID 33587334 DOI: 10.1002/cpz1.51   
2021 Yang Y, Zhu Z, Wang X, Zhang X, Mu K, Shi Y, Peng C, Xu Z, Zhu W. Ligand-based approach for predicting drug targets and for virtual screening against COVID-19. Briefings in Bioinformatics. PMID 33461215 DOI: 10.1093/bib/bbaa422   
2021 Dolberg TB, Meger AT, Boucher JD, Corcoran WK, Schauer EE, Prybutok AN, Raman S, Leonard JN. Computation-guided optimization of split protein systems. Nature Chemical Biology. PMID 33526893 DOI: 10.1038/s41589-020-00729-8   
2021 Humphreys LM, Smith P, Chen Z, Fouad S, D'Angiolella V. The role of E3 ubiquitin ligases in the development and progression of glioblastoma. Cell Death and Differentiation. PMID 33432111 DOI: 10.1038/s41418-020-00696-6   
2021 Gupta Y, Maciorowski D, Zak SE, Jones KA, Kathayat RS, Azizi SA, Mathur R, Pearce CM, Ilc DJ, Husein H, Herbert AS, Bharti A, Rathi B, Durvasula R, Becker DP, et al. Bisindolylmaleimide IX: A novel anti-SARS-CoV2 agent targeting viral main protease 3CLpro demonstrated by virtual screening pipeline and in-vitro validation assays. Methods (San Diego, Calif.). PMID 33453392 DOI: 10.1016/j.ymeth.2021.01.003   
2021 Chen M, Horn HT, Wen T, Cryns VL, Anderson RA. Assessing In Situ Phosphoinositide-Protein Interactions Through Fluorescence Proximity Ligation Assay in Cultured Cells. Methods in Molecular Biology (Clifton, N.J.). 2251: 133-142. PMID 33481236 DOI: 10.1007/978-1-0716-1142-5_9   
2021 Narasimhan S, Pinto C, Lucini Paioni A, van der Zwan J, Folkers GE, Baldus M. Characterizing proteins in a native bacterial environment using solid-state NMR spectroscopy. Nature Protocols. PMID 33442051 DOI: 10.1038/s41596-020-00439-4   
2021 Wang B, Su Z, Wu Y. Characterizing the function of domain linkers in regulating the dynamics of multi-domain fusion proteins by microsecond molecular dynamics simulations and artificial intelligence. Proteins. PMID 33620752 DOI: 10.1002/prot.26066   
2021 Suazo KF, Jeong A, Ahmadi M, Brown C, Qu W, Li L, Distefano MD. Metabolic labeling with an alkyne probe reveals similarities and differences in the prenylomes of several brain-derived cell lines and primary cells. Scientific Reports. 11: 4367. PMID 33623102 DOI: 10.1038/s41598-021-83666-3   
2021 D'Amico F, Mukhopadhyay R, Ovaa H, Mulder MPC. Targeting TRIM Proteins: A quest towards drugging an emerging protein class. Chembiochem : a European Journal of Chemical Biology. PMID 33482040 DOI: 10.1002/cbic.202000787   
2021 Aguirre-Plans J, Meseguer A, Molina-Fernandez R, Marín-López MA, Jumde G, Casanova K, Bonet J, Fornes O, Fernandez-Fuentes N, Oliva B. SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. Bmc Bioinformatics. 22: 4. PMID 33407073 DOI: 10.1186/s12859-020-03770-5   
2021 Prasad K, Ahamad S, Kanipakam H, Gupta D, Kumar V. Simultaneous Inhibition of SARS-CoV-2 Entry Pathways by Cyclosporine. Acs Chemical Neuroscience. PMID 33606519 DOI: 10.1021/acschemneuro.1c00019   
2021 Schmitz S, Ertelt M, Merkl R, Meiler J. Rosetta design with co-evolutionary information retains protein function. Plos Computational Biology. 17: e1008568. PMID 33465067 DOI: 10.1371/journal.pcbi.1008568   
2021 Schmitz S, Ertelt M, Merkl R, Meiler J. Rosetta design with co-evolutionary information retains protein function. Plos Computational Biology. 17: e1008568. PMID 33465067 DOI: 10.1371/journal.pcbi.1008568   
2021 Cobb DW, Kudyba HM, Villegas A, Hoopmann MR, Baptista RP, Bruton B, Krakowiak M, Moritz RL, Muralidharan V. A redox-active crosslinker reveals an essential and inhibitable oxidative folding network in the endoplasmic reticulum of malaria parasites. Plos Pathogens. 17: e1009293. PMID 33534803 DOI: 10.1371/journal.ppat.1009293   
2021 Pham PN, Huličiak M, Biedermannová L, Černý J, Charnavets T, Fuertes G, Herynek Š, Kolářová L, Kolenko P, Pavlíček J, Zahradník J, Mikulecky P, Schneider B. Protein Binder (ProBi) as a New Class of Structurally Robust Non-Antibody Protein Scaffold for Directed Evolution. Viruses. 13. PMID 33514045 DOI: 10.3390/v13020190   
2021 Zhang B, Wang Y, Lin C, Li H, Wang X, Peng Y, Mineev KS, Wilson AJ, Wang H, Wang X. Targeting the transmembrane domain 5 of latent membrane protein 1 using small molecule modulators. European Journal of Medicinal Chemistry. 214: 113210. PMID 33550183 DOI: 10.1016/j.ejmech.2021.113210   
2021 Singh KK, Graether SP. The in vitro structure and functions of the disordered late embryogenesis abundant 3 proteins. Protein Science : a Publication of the Protein Society. PMID 33474748 DOI: 10.1002/pro.4028   
2021 Simard JR, Lee L, Vieux E, Improgo R, Tieu T, Phillips AJ, Fisher SL, Pollock RM, Park E. High-Throughput Quantitative Assay Technologies for Accelerating the Discovery and Optimization of Targeted Protein Degradation Therapeutics. Slas Discovery : Advancing Life Sciences R & D. 2472555220985049. PMID 33430712 DOI: 10.1177/2472555220985049   
2021 Panigrahi R, Glover JNM. Structural insights into DNA double-strand break signaling. The Biochemical Journal. 478: 135-156. PMID 33439989 DOI: 10.1042/BCJ20200066