Bojan Zagrovic, Ph.D. - Publications

2004 Stanford University, Palo Alto, CA 
theoretical methods to understand the physical properties of biological molecules

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Petrov D, Daura X, Zagrovic B. Effect of Oxidative Damage on the Stability and Dimerization of Superoxide Dismutase 1. Biophysical Journal. 110: 1499-509. PMID 27074676 DOI: 10.1016/j.bpj.2016.02.037  0.64
2011 Kuzmanic A, Kruschel D, van Gunsteren WF, Pannu NS, Zagrovic B. Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structures. Journal of Molecular Biology. 411: 286-97. PMID 21645520 DOI: 10.1016/J.Jmb.2011.05.033  0.48
2010 Hlevnjak M, Zitkovic G, Zagrovic B. Hydrophilicity matching - a potential prerequisite for the formation of protein-protein complexes in the cell. Plos One. 5: e11169. PMID 20567518 DOI: 10.1371/Journal.Pone.0011169  0.64
2009 Müller CL, Sbalzarini IF, van Gunsteren WF, Zagrovi? B, Hünenberger PH. In the eye of the beholder: Inhomogeneous distribution of high-resolution shapes within the random-walk ensemble. The Journal of Chemical Physics. 130: 214904. PMID 19508095 DOI: 10.1063/1.3140090  0.92
2008 Zagrovic B, Gattin Z, Lau JK, Huber M, van Gunsteren WF. Structure and dynamics of two beta-peptides in solution from molecular dynamics simulations validated against experiment. European Biophysics Journal : Ebj. 37: 903-12. PMID 18368403 DOI: 10.1007/s00249-008-0307-y  0.92
2008 Schwab F, van Gunsteren WF, Zagrovic B. Computational study of the mechanism and the relative free energies of binding of anticholesteremic inhibitors to squalene-hopene cyclase. Biochemistry. 47: 2945-51. PMID 18247576 DOI: 10.1021/Bi702067H  0.64
2007 Zagrovic B, van Gunsteren WF. Computational Analysis of the Mechanism and Thermodynamics of Inhibition of Phosphodiesterase 5A by Synthetic Ligands. Journal of Chemical Theory and Computation. 3: 301-11. PMID 26627173 DOI: 10.1021/Ct600322D  0.92
2007 Schmid N, Zagrovic B, van Gunsteren WF. Mechanism and thermodynamics of binding of the polypyrimidine tract binding protein to RNA. Biochemistry. 46: 6500-12. PMID 17497933 DOI: 10.1021/Bi6026133  0.92
2007 Zagrovic B. Helical signature motif in the fibre diffraction patterns of random-walk chains Molecular Physics. 105: 1299-1306. DOI: 10.1080/00268970701395114  0.36
2007 Schmid N, Zagrovic B, Van Gunsteren WF. Folding-unfolding equilibrium of a methylidene-substituted β-peptide Helvetica Chimica Acta. 90: 1966-1979. DOI: 10.1002/Hlca.200790204  0.92
2006 Zagrovic B, Pande VS. Simulated unfolded-state ensemble and the experimental NMR structures of villin headpiece yield similar wide-angle solution X-ray scattering profiles. Journal of the American Chemical Society. 128: 11742-3. PMID 16953598 DOI: 10.1021/Ja0640694  0.92
2006 Zagrovic B, van Gunsteren WF. Comparing atomistic simulation data with the NMR experiment: how much can NOEs actually tell us? Proteins. 63: 210-8. PMID 16425239 DOI: 10.1002/Prot.20872  0.92
2005 Zagrovic B, Jayachandran G, Millett IS, Doniach S, Pande VS. How large is an alpha-helix? Studies of the radii of gyration of helical peptides by small-angle X-ray scattering and molecular dynamics. Journal of Molecular Biology. 353: 232-41. PMID 16171817 DOI: 10.1016/J.Jmb.2005.08.053  0.92
2005 Zagrovic B, Lipfert J, Sorin EJ, Millett IS, van Gunsteren WF, Doniach S, Pande VS. Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 11698-703. PMID 16085707 DOI: 10.1073/Pnas.0409693102  0.92
2004 Zagrovic B, Pande VS. How does averaging affect protein structure comparison on the ensemble level? Biophysical Journal. 87: 2240-6. PMID 15454426 DOI: 10.1529/Biophysj.104.042184  1
2004 Kohn JE, Millett IS, Jacob J, Zagrovic B, Dillon TM, Cingel N, Dothager RS, Seifert S, Thiyagarajan P, Sosnick TR, Hasan MZ, Pande VS, Ruczinski I, Doniach S, Plaxco KW. Random-coil behavior and the dimensions of chemically unfolded proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12491-6. PMID 15314214 DOI: 10.1073/Pnas.0403643101  0.64
2004 Lenz P, Zagrovic B, Shapiro J, Pande VS. Folding probabilities: a novel approach to folding transitions and the two-dimensional Ising-model. The Journal of Chemical Physics. 120: 6769-78. PMID 15267572 DOI: 10.1063/1.1667470  1
2003 Zagrovic B, Pande VS. Structural correspondence between the alpha-helix and the random-flight chain resolves how unfolded proteins can have native-like properties. Nature Structural Biology. 10: 955-61. PMID 14555998 DOI: 10.1038/Nsb995  1
2003 Zagrovic B, Pande V. Solvent viscosity dependence of the folding rate of a small protein: distributed computing study. Journal of Computational Chemistry. 24: 1432-6. PMID 12868108 DOI: 10.1002/Jcc.10297  0.48
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  0.64
2002 Snow CD, Zagrovic B, Pande VS. The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations. Journal of the American Chemical Society. 124: 14548-9. PMID 12465960 DOI: 10.1021/Ja028604L  1
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing. Journal of Molecular Biology. 323: 927-37. PMID 12417204 DOI: 10.1016/S0022-2836(02)00997-X  1
2002 Zagrovic B, Snow CD, Khaliq S, Shirts MR, Pande VS. Native-like mean structure in the unfolded ensemble of small proteins. Journal of Molecular Biology. 323: 153-64. PMID 12368107 DOI: 10.1016/S0022-2836(02)00888-4  1
2001 Zagrovic B, Sorin EJ, Pande V. Beta-hairpin folding simulations in atomistic detail using an implicit solvent model. Journal of Molecular Biology. 313: 151-69. PMID 11601853 DOI: 10.1006/Jmbi.2001.5033  0.48
1999 Zagrovic B, Aldrich R. For the latest information, tune to channel KcsA. Science (New York, N.Y.). 285: 59, 61. PMID 10428704 DOI: 10.1126/Science.285.5424.59  0.64
1998 Mende U, Zagrovic B, Cohen A, Li Y, Valenzuela D, Fishman MC, Neer EJ. Effect of deletion of the major brain G-protein alpha subunit (alpha(o)) on coordination of G-protein subunits and on adenylyl cyclase activity. Journal of Neuroscience Research. 54: 263-72. PMID 9788285 DOI: 10.1002/(SICI)1097-4547(19981015)54:2<263::AID-JNR14>3.0.CO;2-5  0.64
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