Young M. Rhee, Ph.D. - Publications

Affiliations: 
2005 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Wang J, Jang Y, Khedkar JK, Koo JY, Kim Y, Lee CJ, Rhee YM, Kim K. How Does Solvation Affect the Binding of Hydrophilic Amino Saccharides to Cucurbit[7]uril with Exceptional Anomeric Selectivity? Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27632939 DOI: 10.1002/Chem.201602810  1
2016 Rhee YM, Park JW. Interpolation for molecular dynamics simulations: from ions in gas phase to proteins in solution International Journal of Quantum Chemistry. 116: 573-577. DOI: 10.1002/Qua.25064  1
2015 Kim CW, Park JW, Rhee YM. Effect of Chromophore Potential Model on the Description of Exciton-Phonon Interactions. The Journal of Physical Chemistry Letters. 6: 2875-80. PMID 26267173 DOI: 10.1021/Acs.Jpclett.5B01141  1
2015 Park J, Song H, Kim Y, Eun B, Kim Y, Bae DY, Park S, Rhee YM, Kim WJ, Kim K, Lee E. N-heterocyclic carbene nitric oxide radicals. Journal of the American Chemical Society. 137: 4642-5. PMID 25844581 DOI: 10.1021/Jacs.5B01976  1
2015 Subotnik JE, Rhee YM. On surface hopping and time-reversal. The Journal of Physical Chemistry. A. 119: 990-5. PMID 25635926 DOI: 10.1021/Jp512024W  1
2015 Shao Y, Gan Z, Epifanovsky E, Gilbert ATB, Wormit M, Kussmann J, Lange AW, Behn A, Deng J, Feng X, Ghosh D, Goldey M, Horn PR, Jacobson LD, Kaliman I, ... ... Rhee YM, et al. Advances in molecular quantum chemistry contained in the Q-Chem 4 program package Molecular Physics. 113: 184-215. DOI: 10.1080/00268976.2014.952696  1
2015 Singha S, Kim D, Roy B, Sambasivan S, Moon H, Rao AS, Kim JY, Joo T, Park JW, Rhee YM, Wang T, Kim KH, Shin YH, Jung J, Ahn KH. A structural remedy toward bright dipolar fluorophores in aqueous media Chemical Science. 6: 4335-4342. DOI: 10.1039/c5sc01076d  1
2015 Jang M, Kim H, Lee S, Kim HW, Khedkar JK, Rhee YM, Hwang I, Kim K, Oh JH. Highly Sensitive and Selective Biosensors Based on Organic Transistors Functionalized with Cucurbit[6]uril Derivatives Advanced Functional Materials. DOI: 10.1002/Adfm.201501587  1
2014 Namgung R, Mi Lee Y, Kim J, Jang Y, Lee BH, Kim IS, Sokkar P, Rhee YM, Hoffman AS, Kim WJ. Poly-cyclodextrin and poly-paclitaxel nano-assembly for anticancer therapy. Nature Communications. 5: 3702. PMID 24805848 DOI: 10.1038/Ncomms4702  1
2014 Seo H, Jun ME, Ranganathan K, Lee KH, Kim KT, Lim W, Rhee YM, Ahn KH. Ground-state elevation approach to suppress side reactions in gold-sensing systems based on alkyne activation. Organic Letters. 16: 1374-7. PMID 24524294 DOI: 10.1021/Ol5001389  1
2012 Ko JY, Choi SM, Rhee YM, Beauchamp JL, Kim HI. Studying interfacial reactions of cholesterol sulfate in an unsaturated phosphatidylglycerol layer with ozone using field induced droplet ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 23: 141-52. PMID 22069038 DOI: 10.1007/S13361-011-0275-9  1
2009 Rhee YM, Casanova D, Head-Gordon M. Quartic-Scaling Analytical Gradient of Quasidegenerate Scaled Opposite Spin Second-Order Perturbation Corrections to Single Excitation Configuration Interaction. Journal of Chemical Theory and Computation. 5: 1224-36. PMID 26609713 DOI: 10.1021/Ct800509Z  1
2009 Kim HW, Rhee YM. Dispersion-oriented soft interaction in a frustrated Lewis pair and the entropic encouragement effect in its formation. Chemistry (Weinheim An Der Bergstrasse, Germany). 15: 13348-55. PMID 19918822 DOI: 10.1002/Chem.200902322  0.01
2009 Rhee YM, Casanova D, Head-Gordon M. Performance of quasi-degenerate scaled opposite spin perturbation corrections to single excitation configuration interaction for excited state structures and excitation energies with application to the Stokes shift of 9-methyl-9,10-dihydro-9-silaphenanthrene. The Journal of Physical Chemistry. A. 113: 10564-76. PMID 19736963 DOI: 10.1021/Jp903659U  1
2008 Casanova D, Rhee YM, Head-Gordon M. Quasidegenerate scaled opposite spin second order perturbation corrections to single excitation configuration interaction. The Journal of Chemical Physics. 128: 164106. PMID 18447420 DOI: 10.1063/1.2907724  1
2008 Rhee YM, Pande VS. Solvent viscosity dependence of the protein folding dynamics. The Journal of Physical Chemistry. B. 112: 6221-7. PMID 18229911 DOI: 10.1021/Jp076301D  1
2007 Rhee YM, Head-Gordon M. Scaled second-order perturbation corrections to configuration interaction singles: efficient and reliable excitation energy methods. The Journal of Physical Chemistry. A. 111: 5314-26. PMID 17521172 DOI: 10.1021/Jp068409J  0.96
2007 Distasio RA, Steele RP, Rhee YM, Shao Y, Head-Gordon M. An improved algorithm for analytical gradient evaluation in resolution-of-the-identity second-order Møller-Plesset perturbation theory: application to alanine tetrapeptide conformational analysis. Journal of Computational Chemistry. 28: 839-56. PMID 17219361 DOI: 10.1002/Jcc.20604  1
2006 Snow CD, Rhee YM, Pande VS. Kinetic definition of protein folding transition state ensembles and reaction coordinates. Biophysical Journal. 91: 14-24. PMID 16617068 DOI: 10.1529/Biophysj.105.075689  1
2006 Sorin EJ, Rhee YM, Shirts MR, Pande VS. The solvation interface is a determining factor in peptide conformational preferences. Journal of Molecular Biology. 356: 248-56. PMID 16364361 DOI: 10.1016/J.Jmb.2005.11.058  1
2006 Rhee YM, DiStasio RA, Lochan RC, Head-Gordon M. Analytical gradient of restricted second-order Møller-Plesset correlation energy with the resolution of the identity approximation, applied to the TCNE dimer anion complex Chemical Physics Letters. 426: 197-203. DOI: 10.1016/J.Cplett.2006.05.092  1
2006 Rhee YM, Pande VS. On the role of chemical detail in simulating protein folding kinetics Chemical Physics. 323: 66-77. DOI: 10.1016/J.Chemphys.2005.08.060  1
2005 Rhee YM, Pande VS. One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution. The Journal of Physical Chemistry. B. 109: 6780-6. PMID 16851763 DOI: 10.1021/Jp045544S  1
2005 Snow CD, Sorin EJ, Rhee YM, Pande VS. How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69. PMID 15869383 DOI: 10.1146/Annurev.Biophys.34.040204.144447  1
2005 Sorin EJ, Rhee YM, Pande VS. Does water play a structural role in the folding of small nucleic acids? Biophysical Journal. 88: 2516-24. PMID 15681648 DOI: 10.1529/Biophysj.104.055087  1
2005 Chong LT, Snow CD, Rhee YM, Pande VS. Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. Journal of Molecular Biology. 345: 869-78. PMID 15588832 DOI: 10.1016/J.Jmb.2004.10.083  1
2004 Rhee YM, Sorin EJ, Jayachandran G, Lindahl E, Pande VS. Simulations of the role of water in the protein-folding mechanism. Proceedings of the National Academy of Sciences of the United States of America. 101: 6456-61. PMID 15090647 DOI: 10.1073/Pnas.0307898101  1
2004 Sorin EJ, Nakatani BJ, Rhee YM, Jayachandran G, Vishal V, Pande VS. Does native state topology determine the RNA folding mechanism? Journal of Molecular Biology. 337: 789-97. PMID 15033351 DOI: 10.1016/J.Jmb.2004.02.024  1
2003 Sorin EJ, Rhee YM, Nakatani BJ, Pande VS. Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations. Biophysical Journal. 85: 790-803. PMID 12885628 DOI: 10.1016/S0006-3495(03)74520-2  1
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  1
2003 Rhee YM, Pande VS. Multiplexed-replica exchange molecular dynamics method for protein folding simulation. Biophysical Journal. 84: 775-86. PMID 12547762 DOI: 10.1016/S0006-3495(03)74897-8  1
2000 Rhee YM. Construction of an accurate potential energy surface by interpolation with Cartesian weighting coordinates Journal of Chemical Physics. 113: 6021-6024. DOI: 10.1063/1.1315348  0.01
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