Young M. Rhee, Ph.D. - Publications

Affiliations: 
2005 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules

70/109 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kim K, Lim S, Shin K, Lee G, Jung Y, Kyoung W, Rhee JK, Rhee YM. Variational quantum eigensolver for closed-shell molecules with non-bosonic corrections. Physical Chemistry Chemical Physics : Pccp. PMID 38406868 DOI: 10.1039/d3cp05570a  0.518
2021 Cho KH, Rhee YM. Computational elucidations on the role of vibrations in energy transfer processes of photosynthetic complexes. Physical Chemistry Chemical Physics : Pccp. PMID 34842245 DOI: 10.1039/d1cp04615b  0.344
2021 Brumboiu IE, Rehn DR, Dreuw A, Rhee YM, Norman P. Analytical gradients for core-excited states in the algebraic diagrammatic construction (ADC) framework. The Journal of Chemical Physics. 155: 044106. PMID 34340367 DOI: 10.1063/5.0058221  0.487
2021 Park J, Cho M, Rhee YM, Jung Y. Theoretical Study on the Degree of CO Activation in CO-Coordinated Ni(0) Complexes. Acs Omega. 6: 7646-7654. PMID 33778275 DOI: 10.1021/acsomega.0c06257  0.416
2020 Mroginski MA, Adam S, Amoyal GS, Barnoy A, Bondar AN, Borin V, Church JR, Domratcheva T, Ensing B, Fanelli F, Ferré N, Filiba O, Pedraza-González L, González R, González-Espinoza CE, ... ... Rhee YM, et al. Frontiers in Multiscale Modelling of Photoreceptor Proteins. Photochemistry and Photobiology. PMID 33369749 DOI: 10.1111/php.13372  0.468
2020 Oh I, Lee H, Kim TW, Kim CW, Jun S, Kim C, Choi EH, Rhee YM, Kim J, Jang WD, Ihee H. Enhancement of Energy Transfer Efficiency with Structural Control of Multichromophore Light-Harvesting Assembly. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 7: 2001623. PMID 33101863 DOI: 10.1002/Advs.202001623  0.375
2020 Kim CW, Rhee YM. Toward monitoring the dissipative vibrational energy flows in open quantum systems by mixed quantum-classical simulations. The Journal of Chemical Physics. 152: 244109. PMID 32610983 DOI: 10.1063/5.0009867  0.4
2020 Kim TW, Lee SJ, Jo J, Kim JG, Ki H, Kim CW, Cho KH, Choi J, Lee JH, Wulff M, Rhee YM, Ihee H. Protein folding from heterogeneous unfolded state revealed by time-resolved X-ray solution scattering. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541047 DOI: 10.1073/Pnas.1913442117  0.425
2020 Chung S, Choi SM, Lee W, Cho KH, Rhee YM. Free energy level correction by Monte Carlo resampling with weighted histogram analysis method Chinese Journal of Chemical Physics. 33: 183-195. DOI: 10.1063/1674-0068/Cjcp2001001  0.406
2019 Kim I, Jeon SO, Jeong D, Choi H, Son WJ, Kim D, Rhee YM, Lee HS. Spin-Vibronic Model for Quantitative Prediction of Reverse Inter-System Crossing Rate in Thermally Activated Delayed Fluorescence Systems. Journal of Chemical Theory and Computation. PMID 31841330 DOI: 10.1021/Acs.Jctc.9B01014  0.303
2019 Cho KH, Chung S, Rhee YM. Efficiently transplanting potential energy interpolation database between two systems: bacteriochlorophyll case with FMO and LH2 complexes. Journal of Chemical Information and Modeling. PMID 31487163 DOI: 10.1021/Acs.Jcim.9B00472  0.45
2019 Kim CW, Lee WG, Kim I, Rhee YM. Effect of Underdamped Vibration on Excitation Energy Transfer: Direct Comparison between Two Different Partitioning Schemes. The Journal of Physical Chemistry. A. PMID 30620598 DOI: 10.1021/Acs.Jpca.8B10977  0.333
2018 Lee W, Kim I, Rhee YM. A proton transfer network that generates deprotonated tyrosine is a key to producing reactive oxygen species in phototoxic KillerRed protein. Physical Chemistry Chemical Physics : Pccp. PMID 30128469 DOI: 10.1039/C8Cp02939C  0.35
2017 Kim CW, Choi B, Rhee YM. Excited state energy fluctuations in the Fenna-Matthews-Olson complex from molecular dynamics simulations with interpolated chromophore potentials. Physical Chemistry Chemical Physics : Pccp. PMID 29186231 DOI: 10.1039/C7Cp06303B  0.428
2017 Heo W, Uddin N, Park JW, Rhee YM, Choi CH, Joo T. Coherent intermolecular proton transfer in the acid-base reaction of excited state pyranine. Physical Chemistry Chemical Physics : Pccp. PMID 28692091 DOI: 10.1039/C7Cp01944K  0.375
2016 Kim CW, Rhee YM. Constructing an Interpolated Potential Energy Surface of a Large Molecule: A Case Study with Bacteriochlorophyll a Model in the Fenna-Matthews-Olson Complex. Journal of Chemical Theory and Computation. PMID 27760297 DOI: 10.1021/Acs.Jctc.6B00647  0.447
2016 Park JW, Rhee YM. Electric Field Keeps Chromophore Planar and Produces High Yield Fluorescence in GFP. Journal of the American Chemical Society. PMID 27662359 DOI: 10.1021/Jacs.6B06833  0.363
2016 Park JW, Rhee YM. Emission shaping in fluorescent proteins: role of electrostatics and π-stacking. Physical Chemistry Chemical Physics : Pccp. PMID 26771034 DOI: 10.1039/C5Cp07535A  0.374
2016 Rhee YM, Park JW. Interpolation for molecular dynamics simulations: from ions in gas phase to proteins in solution International Journal of Quantum Chemistry. 116: 573-577. DOI: 10.1002/Qua.25064  0.444
2015 Kim CW, Park JW, Rhee YM. Effect of Chromophore Potential Model on the Description of Exciton-Phonon Interactions. The Journal of Physical Chemistry Letters. 6: 2875-80. PMID 26267173 DOI: 10.1021/Acs.Jpclett.5B01141  0.438
2015 Subotnik JE, Rhee YM. On surface hopping and time-reversal. The Journal of Physical Chemistry. A. 119: 990-5. PMID 25635926 DOI: 10.1021/Jp512024W  0.568
2015 Shao Y, Gan Z, Epifanovsky E, Gilbert ATB, Wormit M, Kussmann J, Lange AW, Behn A, Deng J, Feng X, Ghosh D, Goldey M, Horn PR, Jacobson LD, Kaliman I, ... ... Rhee YM, et al. Advances in molecular quantum chemistry contained in the Q-Chem 4 program package Molecular Physics. 113: 184-215. DOI: 10.1080/00268976.2014.952696  0.689
2014 Park JW, Rhee YM. Diabatic Population Matrix Formalism for Performing Molecular Mechanics Style Simulations with Multiple Electronic States. Journal of Chemical Theory and Computation. 10: 5238-5253. PMID 26583208 DOI: 10.1021/Ct5006856  0.415
2014 Kim HW, Lee WG, Rhee YM. Improving long time behavior of Poisson bracket mapping equation: a mapping variable scaling approach. The Journal of Chemical Physics. 141: 124107. PMID 25273412 DOI: 10.1063/1.4895962  0.353
2014 Park JW, Rhee YM. Towards the realization of ab initio dynamics at the speed of molecular mechanics: simulations with interpolated diabatic Hamiltonian. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 3183-93. PMID 25080201 DOI: 10.1002/Cphc.201402226  0.428
2014 Kim HW, Rhee YM. Improving long time behavior of Poisson bracket mapping equation: a non-Hamiltonian approach. The Journal of Chemical Physics. 140: 184106. PMID 24832252 DOI: 10.1063/1.4874268  0.323
2014 Park JW, Rhee YM. Constructing polyatomic potential energy surfaces by interpolating diabatic Hamiltonian matrices with demonstration on green fluorescent protein chromophore. The Journal of Chemical Physics. 140: 164112. PMID 24784258 DOI: 10.1063/1.4872155  0.451
2014 Lee W, Rhee YM. Excitonic Energy Transfer of Cryptophyte Phycocyanin 645 Complex in Physiological Temperature by Reduced Hierarchical Equation of Motion Bulletin of the Korean Chemical Society. 35: 858-864. DOI: 10.5012/Bkcs.2014.35.3.858  0.408
2014 Kim HW, Rhee YM. Mixed Quantum-Classical Study of the Nonadiabatic Dynamics in Photosynthetic Systems Biophysical Journal. 106: 806a. DOI: 10.1016/J.Bpj.2013.11.4421  0.386
2014 Park JW, Rhee YM. Interpolation of Potential Energy Surfaces for Nonadiabatic Simulations of Biological Systems Biophysical Journal. 106: 806a. DOI: 10.1016/J.Bpj.2013.11.4420  0.476
2014 Choi SM, Sokkar P, Rhee YM. Simple Method for Hybrid All-Atom and Coarse-Grained Molecular Dynamics Simulations and Its Applications Biophysical Journal. 106: 413a. DOI: 10.1016/J.Bpj.2013.11.2322  0.402
2014 Park JW, Rhee YM. Cover Picture: Towards the Realization of Ab Initio Dynamics at the Speed of Molecular Mechanics: Simulations with Interpolated Diabatic Hamiltonian (ChemPhysChem 15/2014) Chemphyschem. 15: 3137-3137. DOI: 10.1002/Cphc.201490071  0.386
2013 Sokkar P, Choi SM, Rhee YM. Simple Method for Simulating the Mixture of Atomistic and Coarse-Grained Molecular Systems. Journal of Chemical Theory and Computation. 9: 3728-39. PMID 26584124 DOI: 10.1021/Ct400091A  0.395
2013 Kim HW, Rhee YM. On the pH dependent behavior of the firefly bioluminescence: protein dynamics and water content in the active pocket. The Journal of Physical Chemistry. B. 117: 7260-9. PMID 23758315 DOI: 10.1021/Jp4024553  0.372
2012 Park JW, Rhee YM. Interpolated mechanics-molecular mechanics study of internal rotation dynamics of the chromophore unit in blue fluorescent protein and its variants. The Journal of Physical Chemistry. B. 116: 11137-47. PMID 22891786 DOI: 10.1021/Jp306257T  0.409
2012 Kim HW, Kelly A, Park JW, Rhee YM. All-atom semiclassical dynamics study of quantum coherence in photosynthetic Fenna-Matthews-Olson complex. Journal of the American Chemical Society. 134: 11640-51. PMID 22708971 DOI: 10.1021/Ja303025Q  0.359
2012 Woo Kim H, Rhee YM. Molecule-specific determination of atomic polarizabilities with the polarizable atomic multipole model. Journal of Computational Chemistry. 33: 1662-72. PMID 22565616 DOI: 10.1002/Jcc.22985  0.331
2012 Lee WG, Kelly A, Rhee YM. Behavior of poisson bracket mapping equation in studying excitation energy transfer dynamics of cryptophyte phycocyanin 645 complex Bulletin of the Korean Chemical Society. 33: 933-940. DOI: 10.5012/Bkcs.2012.33.3.933  0.396
2011 Park JW, Kim HW, Song CI, Rhee YM. Condensed phase molecular dynamics using interpolated potential energy surfaces with application to the resolvation process of coumarin 153. The Journal of Chemical Physics. 135: 014107. PMID 21744888 DOI: 10.1063/1.3605302  0.417
2011 Song CI, Rhee YM. Dynamics on the electronically excited state surface of the bioluminescent firefly luciferase-oxyluciferin system. Journal of the American Chemical Society. 133: 12040-9. PMID 21728350 DOI: 10.1021/Ja201752P  0.433
2011 Kwon HJ, Kim HW, Rhee YM. On the mechanism of irreversible carbon dioxide binding with a frustrated lewis pair: solvent-assisted frustration and transition-state entropic encouragement. Chemistry (Weinheim An Der Bergstrasse, Germany). 17: 6501-7. PMID 21538604 DOI: 10.1002/Chem.201003483  0.338
2011 Kelly A, Rhee YM. Mixed quantum-classical description of excitation energy transfer in a model Fenna-Matthews-Olsen complex Journal of Physical Chemistry Letters. 2: 808-812. DOI: 10.1021/Jz200059T  0.433
2011 Song CI, Rhee YM. Development of force field parameters for oxyluciferin on its electronic ground and excited states International Journal of Quantum Chemistry. 111: 4091-4105. DOI: 10.1002/Qua.22957  0.403
2009 Rhee YM, Casanova D, Head-Gordon M. Quartic-Scaling Analytical Gradient of Quasidegenerate Scaled Opposite Spin Second-Order Perturbation Corrections to Single Excitation Configuration Interaction. Journal of Chemical Theory and Computation. 5: 1224-36. PMID 26609713 DOI: 10.1021/Ct800509Z  0.553
2009 Kim HW, Rhee YM. Dispersion-oriented soft interaction in a frustrated Lewis pair and the entropic encouragement effect in its formation. Chemistry (Weinheim An Der Bergstrasse, Germany). 15: 13348-55. PMID 19918822 DOI: 10.1002/Chem.200902322  0.303
2009 Rhee YM, Casanova D, Head-Gordon M. Performance of quasi-degenerate scaled opposite spin perturbation corrections to single excitation configuration interaction for excited state structures and excitation energies with application to the Stokes shift of 9-methyl-9,10-dihydro-9-silaphenanthrene. The Journal of Physical Chemistry. A. 113: 10564-76. PMID 19736963 DOI: 10.1021/Jp903659U  0.524
2008 Casanova D, Rhee YM, Head-Gordon M. Quasidegenerate scaled opposite spin second order perturbation corrections to single excitation configuration interaction. The Journal of Chemical Physics. 128: 164106. PMID 18447420 DOI: 10.1063/1.2907724  0.51
2008 Rhee YM, Head-Gordon M. A delicate electronic balance between metal and ligand in [Cu-P-Cu-P] diamondoids: oxidation state dependent plasticity and the formation of a singlet diradicaloid. Journal of the American Chemical Society. 130: 3878-87. PMID 18314976 DOI: 10.1021/Ja0764916  0.431
2008 Rhee YM, Pande VS. Solvent viscosity dependence of the protein folding dynamics. The Journal of Physical Chemistry. B. 112: 6221-7. PMID 18229911 DOI: 10.1021/Jp076301D  0.575
2007 Rhee YM, Head-Gordon M. Scaled second-order perturbation corrections to configuration interaction singles: efficient and reliable excitation energy methods. The Journal of Physical Chemistry. A. 111: 5314-26. PMID 17521172 DOI: 10.1021/Jp068409J  0.487
2007 Rhee YM, Lee TJ, Gudipati MS, Allamandola LJ, Head-Gordon M. Charged polycyclic aromatic hydrocarbon clusters and the galactic extended red emission. Proceedings of the National Academy of Sciences of the United States of America. 104: 5274-8. PMID 17372209 DOI: 10.1073/Pnas.0609396104  0.45
2007 Distasio RA, Steele RP, Rhee YM, Shao Y, Head-Gordon M. An improved algorithm for analytical gradient evaluation in resolution-of-the-identity second-order Møller-Plesset perturbation theory: application to alanine tetrapeptide conformational analysis. Journal of Computational Chemistry. 28: 839-56. PMID 17219361 DOI: 10.1002/Jcc.20604  0.771
2006 Shao Y, Molnar LF, Jung Y, Kussmann J, Ochsenfeld C, Brown ST, Gilbert AT, Slipchenko LV, Levchenko SV, O'Neill DP, DiStasio RA, Lochan RC, Wang T, Beran GJ, Besley NA, ... ... Rhee YM, et al. Advances in methods and algorithms in a modern quantum chemistry program package. Physical Chemistry Chemical Physics : Pccp. 8: 3172-91. PMID 16902710 DOI: 10.1039/B517914A  0.665
2006 Snow CD, Rhee YM, Pande VS. Kinetic definition of protein folding transition state ensembles and reaction coordinates. Biophysical Journal. 91: 14-24. PMID 16617068 DOI: 10.1529/Biophysj.105.075689  0.741
2006 Sorin EJ, Rhee YM, Shirts MR, Pande VS. The solvation interface is a determining factor in peptide conformational preferences. Journal of Molecular Biology. 356: 248-56. PMID 16364361 DOI: 10.1016/J.Jmb.2005.11.058  0.771
2006 Rhee YM, DiStasio RA, Lochan RC, Head-Gordon M. Analytical gradient of restricted second-order Møller-Plesset correlation energy with the resolution of the identity approximation, applied to the TCNE dimer anion complex Chemical Physics Letters. 426: 197-203. DOI: 10.1016/J.Cplett.2006.05.092  0.796
2006 Rhee YM, Pande VS. On the role of chemical detail in simulating protein folding kinetics Chemical Physics. 323: 66-77. DOI: 10.1016/J.Chemphys.2005.08.060  0.599
2005 Rhee YM, Pande VS. One-dimensional reaction coordinate and the corresponding potential of mean force from commitment probability distribution. The Journal of Physical Chemistry. B. 109: 6780-6. PMID 16851763 DOI: 10.1021/Jp045544S  0.546
2005 Snow CD, Sorin EJ, Rhee YM, Pande VS. How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69. PMID 15869383 DOI: 10.1146/Annurev.Biophys.34.040204.144447  0.79
2005 Sorin EJ, Rhee YM, Pande VS. Does water play a structural role in the folding of small nucleic acids? Biophysical Journal. 88: 2516-24. PMID 15681648 DOI: 10.1529/Biophysj.104.055087  0.791
2005 Chong LT, Snow CD, Rhee YM, Pande VS. Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. Journal of Molecular Biology. 345: 869-78. PMID 15588832 DOI: 10.1016/J.Jmb.2004.10.083  0.801
2004 Rhee YM, Sorin EJ, Jayachandran G, Lindahl E, Pande VS. Simulations of the role of water in the protein-folding mechanism. Proceedings of the National Academy of Sciences of the United States of America. 101: 6456-61. PMID 15090647 DOI: 10.1073/Pnas.0307898101  0.78
2004 Sorin EJ, Nakatani BJ, Rhee YM, Jayachandran G, Vishal V, Pande VS. Does native state topology determine the RNA folding mechanism? Journal of Molecular Biology. 337: 789-97. PMID 15033351 DOI: 10.1016/J.Jmb.2004.02.024  0.778
2003 Sorin EJ, Rhee YM, Nakatani BJ, Pande VS. Insights into nucleic acid conformational dynamics from massively parallel stochastic simulations. Biophysical Journal. 85: 790-803. PMID 12885628 DOI: 10.1016/S0006-3495(03)74520-2  0.798
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  0.751
2003 Rhee YM, Pande VS. Multiplexed-replica exchange molecular dynamics method for protein folding simulation. Biophysical Journal. 84: 775-86. PMID 12547762 DOI: 10.1016/S0006-3495(03)74897-8  0.618
2000 Rhee YM. Construction of an accurate potential energy surface by interpolation with Cartesian weighting coordinates Journal of Chemical Physics. 113: 6021-6024. DOI: 10.1063/1.1315348  0.398
1998 Rhee YM, Kim MS. Dynamic isotope effect on the product energy partitioning in CH2OH+→CHO++H2 The Journal of Chemical Physics. 109: 5363-5371. DOI: 10.1063/1.477155  0.387
1997 Rhee YM, Kim MS. Mode-specific energy analysis for rotating-vibrating triatomic molecules in classical trajectory simulation The Journal of Chemical Physics. 107: 1394-1402. DOI: 10.1063/1.474493  0.361
1997 Rhee YM, Lee TG, Park SC, Kim MS. Potential energy surfaces for polyatomic reactions by interpolation with reaction path weight: CH2OH+→CHO++H2 reaction The Journal of Chemical Physics. 106: 1003-1012. DOI: 10.1063/1.473184  0.357
Low-probability matches (unlikely to be authored by this person)
2016 Wang J, Jang Y, Khedkar JK, Koo JY, Kim Y, Lee CJ, Rhee YM, Kim K. How Does Solvation Affect the Binding of Hydrophilic Amino Saccharides to Cucurbit[7]uril with Exceptional Anomeric Selectivity? Chemistry (Weinheim An Der Bergstrasse, Germany). PMID 27632939 DOI: 10.1002/Chem.201602810  0.288
2021 Kim I, Cho KH, Jeon SO, Son WJ, Kim D, Rhee YM, Jang I, Choi H, Kim DS. Three States Involving Vibronic Resonance is a Key to Enhancing Reverse Intersystem Crossing Dynamics of an Organoboron-Based Ultrapure Blue Emitter. Jacs Au. 1: 987-997. PMID 34467345 DOI: 10.1021/jacsau.1c00179  0.286
2023 Kang DH, Cho KH, Kim J, Eun HJ, Rhee YM, Kim SK. Electron-Binding Dynamics of the Dipole-Bound State: Correlation Effect on the Autodetachment Dynamics. Journal of the American Chemical Society. PMID 37972034 DOI: 10.1021/jacs.3c10099  0.281
2018 Kim HW, Rhee YM, Shin SK. Charge-dipole interactions in G-quadruplex thrombin-binding aptamer. Physical Chemistry Chemical Physics : Pccp. PMID 30074033 DOI: 10.1039/C8Cp03050B  0.28
2015 Singha S, Kim D, Roy B, Sambasivan S, Moon H, Rao AS, Kim JY, Joo T, Park JW, Rhee YM, Wang T, Kim KH, Shin YH, Jung J, Ahn KH. A structural remedy toward bright dipolar fluorophores in aqueous media. Chemical Science. 6: 4335-4342. PMID 29218204 DOI: 10.1039/C5Sc01076D  0.279
2012 Ko JY, Choi SM, Rhee YM, Beauchamp JL, Kim HI. Studying interfacial reactions of cholesterol sulfate in an unsaturated phosphatidylglycerol layer with ozone using field induced droplet ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 23: 141-52. PMID 22069038 DOI: 10.1007/S13361-011-0275-9  0.274
2011 Kim M, Min BI, Lee G, Kwon HJ, Rhee YM, Shim JH. Density functional calculations of electronic structure and magnetic properties of the hydrocarbon K3picene superconductor near the metal-insulator transition Physical Review B - Condensed Matter and Materials Physics. 83. DOI: 10.1103/Physrevb.83.214510  0.269
2020 Kim HW, Rhee YM. Two-oscillator mapping modification of the Poisson bracket mapping equation formulation of the quantum-classical Liouville equation. The Journal of Chemical Physics. 153: 214103. PMID 33291890 DOI: 10.1063/5.0027799  0.261
2019 Kim SS, Rhee YM. Modeling Charge Flux by Interpolating Atomic Partial Charges. Journal of Chemical Information and Modeling. PMID 31125227 DOI: 10.1021/Acs.Jcim.9B00307  0.261
2013 Park JW, Rhee YM, Kim MS. Can adenosine triarsenate role as an energy carrier? Bulletin of the Korean Chemical Society. 34: 361-362. DOI: 10.5012/Bkcs.2013.34.2.361  0.26
2013 Kim KT, Kim HW, Moon D, Rhee YM, Kim BH. (DNS)C: a fluorescent, environmentally sensitive cytidine derivative for the direct detection of GGG triad sequences. Organic & Biomolecular Chemistry. 11: 5605-14. PMID 23846401 DOI: 10.1039/C3Ob41222A  0.256
2013 Jeong HS, Choi SM, Kim HW, Park JW, Park HN, Park SM, Jang SK, Rhee YM, Kim BH. Fluorescent peptide indicator displacement assay for monitoring interactions between RNA and RNA binding proteins. Molecular Biosystems. 9: 948-51. PMID 23255000 DOI: 10.1039/C2Mb25470K  0.251
2019 Chung S, Choi SM, Rhee YM. Exploring the Possibility of Excited State Keto‐Enolate Transformation of the Oxyluciferin‐Luciferase Complex with QM/MM Free Energy Simulations Chemphotochem. 3: 804-813. DOI: 10.1002/CPTC.201900114  0.246
2021 Cho KH, Rhee YM. Cooperation between Excitation Energy Transfer and Antisynchronously Coupled Vibrations. The Journal of Physical Chemistry. B. PMID 34013724 DOI: 10.1021/acs.jpcb.1c01194  0.243
2014 Seo H, Jun ME, Ranganathan K, Lee KH, Kim KT, Lim W, Rhee YM, Ahn KH. Ground-state elevation approach to suppress side reactions in gold-sensing systems based on alkyne activation. Organic Letters. 16: 1374-7. PMID 24524294 DOI: 10.1021/Ol5001389  0.24
2011 Egorova OA, Seo H, Kim Y, Moon D, Rhee YM, Ahn KH. Characterization of vinylgold intermediates: gold-mediated cyclization of acetylenic amides. Angewandte Chemie (International Ed. in English). 50: 11446-50. PMID 22113804 DOI: 10.1002/Anie.201106132  0.24
2022 Park JW, Cho KH, Rhee YM. Mechanism of Ir(ppy) Guest Exciton Formation with the Exciplex-Forming TCTA:TPBI Cohost within a Phosphorescent Organic Light-Emitting Diode Environment. International Journal of Molecular Sciences. 23. PMID 35682617 DOI: 10.3390/ijms23115940  0.237
2015 Jang M, Kim H, Lee S, Kim HW, Khedkar JK, Rhee YM, Hwang I, Kim K, Oh JH. Highly Sensitive and Selective Biosensors Based on Organic Transistors Functionalized with Cucurbit[6]uril Derivatives Advanced Functional Materials. DOI: 10.1002/Adfm.201501587  0.237
2012 Kim O, Kim SY, Ahn H, Kim CW, Rhee YM, Park MJ. Phase behavior and conductivity of sulfonated block copolymers containing heterocyclic diazole-based ionic liquids Macromolecules. 45: 8702-8713. DOI: 10.1021/Ma301803F  0.232
2015 Jang M, Kim H, Lee S, Kim HW, Khedkar JK, Rhee YM, Hwang I, Kim K, Oh JH. Organic Electronics: Highly Sensitive and Selective Biosensors Based on Organic Transistors Functionalized with Cucurbit[6]uril Derivatives (Adv. Funct. Mater. 30/2015) Advanced Functional Materials. 25: 4920-4920. DOI: 10.1002/Adfm.201570207  0.23
2014 Namgung R, Mi Lee Y, Kim J, Jang Y, Lee BH, Kim IS, Sokkar P, Rhee YM, Hoffman AS, Kim WJ. Poly-cyclodextrin and poly-paclitaxel nano-assembly for anticancer therapy. Nature Communications. 5: 3702. PMID 24805848 DOI: 10.1038/Ncomms4702  0.229
2023 Park SW, Kim D, Rhee YM. Overcoming the Limitation of Spin Statistics in Organic Light Emitting Diodes (OLEDs): Hot Exciton Mechanism and Its Characterization. International Journal of Molecular Sciences. 24. PMID 37569740 DOI: 10.3390/ijms241512362  0.221
2021 Ki H, Jo J, Kim Y, Kim TW, Kim C, Kim Y, Kim CW, Muniyappan S, Lee SJ, Kim Y, Kim HM, Yang Y, Rhee YM, Ihee H. Uncovering the Conformational Distribution of a Small Protein with Nanoparticle-Aided Cryo-Electron Microscopy Sampling. The Journal of Physical Chemistry Letters. 6565-6573. PMID 34251825 DOI: 10.1021/acs.jpclett.1c01277  0.219
2012 Egorova OA, Seo H, Kim Y, Moon D, Rhee YM, Ahn KH. Corrigendum: Characterization of Vinylgold Intermediates: Gold-Mediated Cyclization of Acetylenic Amides Angewandte Chemie International Edition. 51: 4511-4511. DOI: 10.1002/Anie.201201329  0.215
2020 Park SW, Yang JH, Choi H, Rhee YM, Kim D. Effect of Perturbative Vibronic Correction for Weak Fluorescence in Thermally Activated Delayed Fluorescence Systems. The Journal of Physical Chemistry. A. PMID 33245236 DOI: 10.1021/acs.jpca.0c09439  0.212
2010 Sambasivan S, Kim SG, Choi SM, Rhee YM, Ahn KH. C3-symmetric cage-like receptors: chiral discrimination of α-chiral amines in a confined space. Organic Letters. 12: 4228-31. PMID 20812757 DOI: 10.1021/Ol1015527  0.211
2015 Park J, Song H, Kim Y, Eun B, Kim Y, Bae DY, Park S, Rhee YM, Kim WJ, Kim K, Lee E. N-heterocyclic carbene nitric oxide radicals. Journal of the American Chemical Society. 137: 4642-5. PMID 25844581 DOI: 10.1021/Jacs.5B01976  0.191
2023 Go YJ, Kalathingal M, Rhee YM. Elucidating activation and deactivation dynamics of VEGFR-2 transmembrane domain with coarse-grained molecular dynamics simulations. Plos One. 18: e0281781. PMID 36795710 DOI: 10.1371/journal.pone.0281781  0.187
2023 Jang SJ, Rhee YM. Modified Fermi's golden rule rate expressions. The Journal of Chemical Physics. 159. PMID 37403843 DOI: 10.1063/5.0152804  0.163
2016 Park JW, Rhee YM. Quantum Chemistry Based Arguments about Singlet Oxygen Formation Trends from Fluorescent Proteins Rapid Communication in Photoscience. 5: 18-20. DOI: 10.5857/RCP.2016.5.2.18  0.158
2023 Kalathingal M, Rhee YM. Molecular mechanism of binding between a therapeutic RNA aptamer and its protein target VEGF: A molecular dynamics study. Journal of Computational Chemistry. PMID 36625560 DOI: 10.1002/jcc.27070  0.153
2021 Lee W, Park JW, Go YJ, Kim WJ, Rhee YM. Considering both small and large scale motions of vascular endothelial growth factor (VEGF) is crucial for reliably predicting its binding affinities to DNA aptamers. Rsc Advances. 11: 9315-9326. PMID 35423456 DOI: 10.1039/d0ra10106k  0.141
1998 RHEE Y, PERROS HG. Iie Transactions. 30: 973-979. DOI: 10.1023/A:1007537208927  0.12
2024 Kim SS, Rhee YM. Potential energy interpolation with target-customized weighting coordinates: application to excited-state dynamics of photoactive yellow protein chromophore in water. Physical Chemistry Chemical Physics : Pccp. PMID 38440829 DOI: 10.1039/d3cp05643k  0.12
2015 Singha S, Kim D, Roy B, Sambasivan S, Moon H, Rao AS, Kim JY, Joo T, Park JW, Rhee YM, Wang T, Kim KH, Shin YH, Jung J, Ahn KH. A structural remedy toward bright dipolar fluorophores in aqueous media Chemical Science. 6: 4335-4342. DOI: 10.1039/c5sc01076d  0.107
1997 Lee TG, Rhee YM, Kim MS, Park SC. Energy partitioning during the exit channel motion for CH2OH+→CHO++H2 Chemical Physics Letters. 264: 303-308. DOI: 10.1016/S0009-2614(96)01329-2  0.105
2015 Kim HY, Yoon JY, Yun JH, Cho KW, Lee SH, Rhee YM, Jung HS, Lim HJ, Lee H, Choi J, Heo JN, Lee W, No KT, Min D, Choi KY. CXXC5 is a negative-feedback regulator of the Wnt/β-catenin pathway involved in osteoblast differentiation. Cell Death and Differentiation. 22: 912-20. PMID 25633194 DOI: 10.1038/cdd.2014.238  0.041
2014 Huh JH, Song MK, Park KH, Kim KJ, Kim JE, Rhee YM, Lim SK. Gender-specific pleiotropic bone-muscle relationship in the elderly from a nationwide survey (KNHANES IV). Osteoporosis International : a Journal Established as Result of Cooperation Between the European Foundation For Osteoporosis and the National Osteoporosis Foundation of the Usa. 25: 1053-61. PMID 24150214 DOI: 10.1007/s00198-013-2531-2  0.019
2010 Park W, Kim NK, Kim MY, Rhee YM, Kim HJ. Osteonecrosis of the jaw induced by oral administration of bisphosphonates in Asian population: five cases. Osteoporosis International : a Journal Established as Result of Cooperation Between the European Foundation For Osteoporosis and the National Osteoporosis Foundation of the Usa. 21: 527-33. PMID 19484166 DOI: 10.1007/s00198-009-0973-3  0.01
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