Christopher D. Snow, Ph.D. - Publications

2006 Stanford University, Palo Alto, CA 
theoretical methods to understand the physical properties of biological molecules

31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Johnson LB, Snow CD. Molecular Dynamics Simulations of Cellulase Homologues in Aqueous 1-ethyl-3-methylimidazolium Chloride. Journal of Biomolecular Structure & Dynamics. 1-41. PMID 27320477 DOI: 10.1080/07391102.2016.1204364  0.68
2016 Johnson LB, Park S, Gintner LP, Snow CD. Characterization of supercharged cellulase activity and stability in ionic liquids Journal of Molecular Catalysis B: Enzymatic. 132: 84-90. DOI: 10.1016/j.molcatb.2016.05.008  0.68
2013 Brinkmann-Chen S, Flock T, Cahn JK, Snow CD, Brustad EM, McIntosh JA, Meinhold P, Zhang L, Arnold FH. General approach to reversing ketol-acid reductoisomerase cofactor dependence from NADPH to NADH. Proceedings of the National Academy of Sciences of the United States of America. 110: 10946-51. PMID 23776225 DOI: 10.1073/pnas.1306073110  0.68
2012 Smith MA, Rentmeister A, Snow CD, Wu T, Farrow MF, Mingardon F, Arnold FH. A diverse set of family 48 bacterial glycoside hydrolase cellulases created by structure-guided recombination. The Febs Journal. 279: 4453-65. PMID 23075376 DOI: 10.1111/febs.12032  0.68
2012 Liu X, Bastian S, Snow CD, Brustad EM, Saleski TE, Xu JH, Meinhold P, Arnold FH. Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol. Journal of Biotechnology. 164: 188-95. PMID 22974724 DOI: 10.1016/j.jbiotec.2012.08.008  0.68
2012 Brustad EM, Lelyveld VS, Snow CD, Crook N, Jung ST, Martinez FM, Scholl TJ, Jasanoff A, Arnold FH. Structure-guided directed evolution of highly selective p450-based magnetic resonance imaging sensors for dopamine and serotonin. Journal of Molecular Biology. 422: 245-62. PMID 22659321 DOI: 10.1016/j.jmb.2012.05.029  0.68
2012 Chen MM, Snow CD, Vizcarra CL, Mayo SL, Arnold FH. Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes. Protein Engineering, Design & Selection : Peds. 25: 171-8. PMID 22334757 DOI: 10.1093/protein/gzs004  0.68
2011 Bastian S, Liu X, Meyerowitz JT, Snow CD, Chen MM, Arnold FH. Engineered ketol-acid reductoisomerase and alcohol dehydrogenase enable anaerobic 2-methylpropan-1-ol production at theoretical yield in Escherichia coli. Metabolic Engineering. 13: 345-52. PMID 21515217 DOI: 10.1016/j.ymben.2011.02.004  0.68
2011 Rentmeister A, Brown TR, Snow CD, Carbone MN, Arnold FH. Engineered Bacterial Mimics of Human Drug Metabolizing Enzyme CYP2C9 Chemcatchem. 3: 1065-1071. DOI: 10.1002/cctc.201000452  0.68
2011 Farrow MF, Lee TM, Snow CD, Romero PP, Arnold FH. SCHEMA recombination reveals structural characteristics of active variants of Hypocrea jecorina Cel5a Acs National Meeting Book of Abstracts 0.68
2010 Lewis JC, Mantovani SM, Fu Y, Snow CD, Komor RS, Wong CH, Arnold FH. Combinatorial alanine substitution enables rapid optimization of cytochrome P450BM3 for selective hydroxylation of large substrates. Chembiochem : a European Journal of Chemical Biology. 11: 2502-5. PMID 21108271 DOI: 10.1002/cbic.201000565  0.68
2010 Lucent D, Snow CD, Aitken CE, Pande VS. Non-bulk-like solvent behavior in the ribosome exit tunnel Plos Computational Biology. 6. PMID 20975935 DOI: 10.1371/journal.pcbi.1000963  0.68
2009 Heinzelman P, Snow CD, Smith MA, Yu X, Kannan A, Boulware K, Villalobos A, Govindarajan S, Minshull J, Arnold FH. SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stability. The Journal of Biological Chemistry. 284: 26229-33. PMID 19625252 DOI: 10.1074/jbc.C109.034058  0.68
2009 Heinzelman P, Snow CD, Wu I, Nguyen C, Villalobos A, Govindarajan S, Minshull J, Arnold FH. A family of thermostable fungal cellulases created by structure-guided recombination. Proceedings of the National Academy of Sciences of the United States of America. 106: 5610-5. PMID 19307582 DOI: 10.1073/pnas.0901417106  0.68
2008 Petrone PM, Snow CD, Lucent D, Pande VS. Side-chain recognition and gating in the ribosome exit tunnel. Proceedings of the National Academy of Sciences of the United States of America. 105: 16549-54. PMID 18946046 DOI: 10.1073/pnas.0801795105  0.68
2008 Fasan R, Meharenna YT, Snow CD, Poulos TL, Arnold FH. Evolutionary history of a specialized p450 propane monooxygenase. Journal of Molecular Biology. 383: 1069-80. PMID 18619466 DOI: 10.1016/j.jmb.2008.06.060  0.68
2008 Snow CD. Hunting for predictive computational drug-discovery models. Expert Review of Anti-Infective Therapy. 6: 291-3. PMID 18588493 DOI: 10.1586/14787210.6.3.291  0.32
2007 Li Y, Drummond DA, Sawayama AM, Snow CD, Bloom JD, Arnold FH. A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments. Nature Biotechnology. 25: 1051-6. PMID 17721510 DOI: 10.1038/nbt1333  0.68
2006 Suydam IT, Snow CD, Pande VS, Boxer SG. Electric fields at the active site of an enzyme: direct comparison of experiment with theory. Science (New York, N.Y.). 313: 200-4. PMID 16840693 DOI: 10.1126/science.1127159  0.68
2006 Snow CD, Rhee YM, Pande VS. Kinetic definition of protein folding transition state ensembles and reaction coordinates. Biophysical Journal. 91: 14-24. PMID 16617068 DOI: 10.1529/biophysj.105.075689  0.68
2005 Fujitani H, Tanida Y, Ito M, Jayachandran G, Snow CD, Shirts MR, Sorin EJ, Pande VS. Direct calculation of the binding free energies of FKBP ligands. The Journal of Chemical Physics. 123: 084108. PMID 16164283 DOI: 10.1063/1.1999637  1
2005 Snow CD, Sorin EJ, Rhee YM, Pande VS. How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69. PMID 15869383 DOI: 10.1146/annurev.biophys.34.040204.144447  1
2005 Chong LT, Snow CD, Rhee YM, Pande VS. Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. Journal of Molecular Biology. 345: 869-78. PMID 15588832 DOI: 10.1016/j.jmb.2004.10.083  0.68
2004 Singhal N, Snow CD, Pande VS. Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin. The Journal of Chemical Physics. 121: 415-25. PMID 15260562 DOI: 10.1063/1.1738647  1
2004 Snow CD, Qiu L, Du D, Gai F, Hagen SJ, Pande VS. Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 101: 4077-82. PMID 15020773 DOI: 10.1073/pnas.0305260101  0.68
2003 Luisi DL, Snow CD, Lin JJ, Hendsch ZS, Tidor B, Raleigh DP. Surface salt bridges, double-mutant cycles, and protein stability: An experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein L9 Biochemistry. 42: 7050-7060. PMID 12795600 DOI: 10.1021/bi027202n  0.68
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/bip.10219  0.68
2002 Snow CD, Zagrovic B, Pande VS. The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations. Journal of the American Chemical Society. 124: 14548-9. PMID 12465960 DOI: 10.1021/ja028604l  1
2002 Snow CD, Nguyen H, Pande VS, Gruebele M. Absolute comparison of simulated and experimental protein-folding dynamics. Nature. 420: 102-6. PMID 12422224 DOI: 10.1038/nature01160  0.68
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing. Journal of Molecular Biology. 323: 927-37. PMID 12417204 DOI: 10.1016/S0022-2836(02)00997-X  1
2002 Zagrovic B, Snow CD, Khaliq S, Shirts MR, Pande VS. Native-like mean structure in the unfolded ensemble of small proteins. Journal of Molecular Biology. 323: 153-64. PMID 12368107 DOI: 10.1016/S0022-2836(02)00888-4  1
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