Christopher D. Snow, Ph.D. - Publications

Affiliations: 
2006 Stanford University, Palo Alto, CA 
Area:
theoretical methods to understand the physical properties of biological molecules

37/73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kowalski AE, Johnson LB, Dierl HK, Park S, Huber TR, Snow CD. Porous protein crystals as scaffolds for enzyme immobilization. Biomaterials Science. PMID 30758353 DOI: 10.1039/C8Bm01378K  0.311
2018 Hartje LF, Snow CD. Protein crystal based materials for nanoscale applications in medicine and biotechnology. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1547. PMID 30488657 DOI: 10.1002/Wnan.1547  0.322
2018 Zhang Y, Zhang X, Tang J, Snow CD, Sun G, Kowalski AE, Hartje LF, Zhao N, Wang Y, Belfiore LA. Synthesis of luminescent lanthanide complexes within crosslinked protein crystal matrices Crystengcomm. 20: 2267-2277. DOI: 10.1039/C8Ce00318A  0.314
2018 Hartje LF, Bui HT, Andales DA, James SP, Huber TR, Snow CD. Characterizing the Cytocompatibility of Various Cross-Linking Chemistries for the Production of Biostable Large-Pore Protein Crystal Materials Acs Biomaterials Science & Engineering. 4: 826-831. DOI: 10.1021/Acsbiomaterials.8B00023  0.316
2018 Hartje LF, Munsky BE, Bui HT, Andales DA, Snow CD. Characterizing Large-Pore Protein Crystals for Advanced Material Applications Biophysical Journal. 114: 691a. DOI: 10.1016/J.Bpj.2017.11.3725  0.309
2017 Huber TR, McPherson EC, Keating CE, Snow CD. Installing Guest Molecules at Specific Sites within Scaffold Protein Crystals. Bioconjugate Chemistry. PMID 29232505 DOI: 10.1021/Acs.Bioconjchem.7B00668  0.329
2017 Hartje LF, Munsky BE, Ni TW, Ackerson CJ, Snow CD. Adsorption-Coupled Diffusion of Gold Nanoclusters Within a Large-Pore Protein Crystal Scaffold. The Journal of Physical Chemistry. B. PMID 28714685 DOI: 10.1021/Acs.Jpcb.7B03999  0.311
2016 Huber TR, Hartje LF, McPherson EC, Kowalski AE, Snow CD. Programmed Assembly of Host-Guest Protein Crystals. Small (Weinheim An Der Bergstrasse, Germany). PMID 27925463 DOI: 10.1002/Smll.201602703  0.338
2016 Johnson LB, Snow CD. Molecular Dynamics Simulations of Cellulase Homologues in Aqueous 1-ethyl-3-methylimidazolium Chloride. Journal of Biomolecular Structure & Dynamics. 1-41. PMID 27320477 DOI: 10.1080/07391102.2016.1204364  0.331
2016 Lunt MW, Snow CD. A Structure-Based Design Protocol for Optimizing Combinatorial Protein Libraries. Methods in Molecular Biology (Clifton, N.J.). 1414: 99-138. PMID 27094288 DOI: 10.1007/978-1-4939-3569-7_7  0.358
2016 Bennett JA, Snow CD. Optimizing Shape Complementarity Scoring Parameters for Recognition of Authentic Protein Crystal Packing Arrangements Crystal Growth & Design. 16: 5579-5583. DOI: 10.1021/Acs.Cgd.6B00769  0.345
2015 Johnson LB, Gintner LP, Park S, Snow CD. Discriminating between stabilizing and destabilizing protein design mutations via recombination and simulation. Protein Engineering, Design & Selection : Peds. 28: 259-67. PMID 26080450 DOI: 10.1093/Protein/Gzv030  0.359
2014 Johnson LB, Huber TR, Snow CD. Methods for library-scale computational protein design. Methods in Molecular Biology (Clifton, N.J.). 1216: 129-59. PMID 25213414 DOI: 10.1007/978-1-4939-1486-9_7  0.36
2012 Smith MA, Rentmeister A, Snow CD, Wu T, Farrow MF, Mingardon F, Arnold FH. A diverse set of family 48 bacterial glycoside hydrolase cellulases created by structure-guided recombination. The Febs Journal. 279: 4453-65. PMID 23075376 DOI: 10.1111/Febs.12032  0.311
2012 Liu X, Bastian S, Snow CD, Brustad EM, Saleski TE, Xu JH, Meinhold P, Arnold FH. Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol. Journal of Biotechnology. 164: 188-95. PMID 22974724 DOI: 10.1016/J.Jbiotec.2012.08.008  0.314
2012 Brustad EM, Lelyveld VS, Snow CD, Crook N, Jung ST, Martinez FM, Scholl TJ, Jasanoff A, Arnold FH. Structure-guided directed evolution of highly selective p450-based magnetic resonance imaging sensors for dopamine and serotonin. Journal of Molecular Biology. 422: 245-62. PMID 22659321 DOI: 10.1016/J.Jmb.2012.05.029  0.304
2012 Chen MM, Snow CD, Vizcarra CL, Mayo SL, Arnold FH. Comparison of random mutagenesis and semi-rational designed libraries for improved cytochrome P450 BM3-catalyzed hydroxylation of small alkanes. Protein Engineering, Design & Selection : Peds. 25: 171-8. PMID 22334757 DOI: 10.1093/Protein/Gzs004  0.305
2011 Ng AH, Snow CD. Polarizable protein packing. Journal of Computational Chemistry. 32: 1334-44. PMID 21264879 DOI: 10.1002/Jcc.21714  0.35
2010 Lucent D, Snow CD, Aitken CE, Pande VS. Non-bulk-like solvent behavior in the ribosome exit tunnel Plos Computational Biology. 6. PMID 20975935 DOI: 10.1371/Journal.Pcbi.1000963  0.56
2009 Loksha IV, Maiolo JR, Hong CW, Ng A, Snow CD. SHARPEN-systematic hierarchical algorithms for rotamers and proteins on an extended network. Journal of Computational Chemistry. 30: 999-1005. PMID 19170085 DOI: 10.1002/Jcc.21204  0.42
2008 Petrone PM, Snow CD, Lucent D, Pande VS. Side-chain recognition and gating in the ribosome exit tunnel. Proceedings of the National Academy of Sciences of the United States of America. 105: 16549-54. PMID 18946046 DOI: 10.1073/Pnas.0801795105  0.762
2008 Fasan R, Meharenna YT, Snow CD, Poulos TL, Arnold FH. Evolutionary history of a specialized p450 propane monooxygenase. Journal of Molecular Biology. 383: 1069-80. PMID 18619466 DOI: 10.1016/J.Jmb.2008.06.060  0.319
2007 Li Y, Drummond DA, Sawayama AM, Snow CD, Bloom JD, Arnold FH. A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments. Nature Biotechnology. 25: 1051-6. PMID 17721510 DOI: 10.1038/Nbt1333  0.301
2006 Suydam IT, Snow CD, Pande VS, Boxer SG. Electric fields at the active site of an enzyme: direct comparison of experiment with theory. Science (New York, N.Y.). 313: 200-4. PMID 16840693 DOI: 10.1126/Science.1127159  0.511
2006 Snow CD, Rhee YM, Pande VS. Kinetic definition of protein folding transition state ensembles and reaction coordinates. Biophysical Journal. 91: 14-24. PMID 16617068 DOI: 10.1529/Biophysj.105.075689  0.728
2005 Fujitani H, Tanida Y, Ito M, Jayachandran G, Snow CD, Shirts MR, Sorin EJ, Pande VS. Direct calculation of the binding free energies of FKBP ligands. The Journal of Chemical Physics. 123: 084108. PMID 16164283 DOI: 10.1063/1.1999637  0.695
2005 Snow CD, Sorin EJ, Rhee YM, Pande VS. How well can simulation predict protein folding kinetics and thermodynamics? Annual Review of Biophysics and Biomolecular Structure. 34: 43-69. PMID 15869383 DOI: 10.1146/Annurev.Biophys.34.040204.144447  0.793
2005 Chong LT, Snow CD, Rhee YM, Pande VS. Dimerization of the p53 oligomerization domain: identification of a folding nucleus by molecular dynamics simulations. Journal of Molecular Biology. 345: 869-78. PMID 15588832 DOI: 10.1016/J.Jmb.2004.10.083  0.793
2004 Singhal N, Snow CD, Pande VS. Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin. The Journal of Chemical Physics. 121: 415-25. PMID 15260562 DOI: 10.1063/1.1738647  0.603
2004 Snow CD, Qiu L, Du D, Gai F, Hagen SJ, Pande VS. Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 101: 4077-82. PMID 15020773 DOI: 10.1073/Pnas.0305260101  0.663
2003 Luisi DL, Snow CD, Lin JJ, Hendsch ZS, Tidor B, Raleigh DP. Surface salt bridges, double-mutant cycles, and protein stability: An experimental and computational analysis of the interaction of the Asp 23 side chain with the N-terminus of the N-terminal domain of the ribosomal protein L9 Biochemistry. 42: 7050-7060. PMID 12795600 DOI: 10.1021/Bi027202N  0.375
2003 Pande VS, Baker I, Chapman J, Elmer SP, Khaliq S, Larson SM, Rhee YM, Shirts MR, Snow CD, Sorin EJ, Zagrovic B. Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing. Biopolymers. 68: 91-109. PMID 12579582 DOI: 10.1002/Bip.10219  0.688
2002 Snow CD, Zagrovic B, Pande VS. The Trp cage: folding kinetics and unfolded state topology via molecular dynamics simulations. Journal of the American Chemical Society. 124: 14548-9. PMID 12465960 DOI: 10.1021/Ja028604L  0.761
2002 Snow CD, Nguyen H, Pande VS, Gruebele M. Absolute comparison of simulated and experimental protein-folding dynamics. Nature. 420: 102-6. PMID 12422224 DOI: 10.1038/Nature01160  0.707
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing. Journal of Molecular Biology. 323: 927-37. PMID 12417204 DOI: 10.1016/S0022-2836(02)00997-X  0.811
2002 Zagrovic B, Snow CD, Khaliq S, Shirts MR, Pande VS. Native-like mean structure in the unfolded ensemble of small proteins. Journal of Molecular Biology. 323: 153-64. PMID 12368107 DOI: 10.1016/S0022-2836(02)00888-4  0.795
2002 Zagrovic B, Snow CD, Shirts MR, Pande VS. Corrigendum to “Simulation of Folding of a Small Alpha-helical Protein in Atomistic Detail using Worldwide-distributed Computing” Journal of Molecular Biology. 324: 1051. DOI: 10.1016/S0022-2836(02)01244-5  0.76
Low-probability matches (unlikely to be authored by this person)
2016 Reynolds EW, McHenry MW, Cannac F, Gober JG, Snow CD, Brustad EM. An evolved orthogonal enzyme/cofactor pair. Journal of the American Chemical Society. PMID 27575374 DOI: 10.1021/Jacs.6B05847  0.3
2013 Brinkmann-Chen S, Flock T, Cahn JK, Snow CD, Brustad EM, McIntosh JA, Meinhold P, Zhang L, Arnold FH. General approach to reversing ketol-acid reductoisomerase cofactor dependence from NADPH to NADH. Proceedings of the National Academy of Sciences of the United States of America. 110: 10946-51. PMID 23776225 DOI: 10.1073/Pnas.1306073110  0.297
2019 Sun G, Tang J, Snow CD, Li Z, Zhang Y, Wang Y, Belfiore LA. Drug Sensing Protein Crystals Doped with Luminescent Lanthanide Complexes Crystal Growth & Design. 19: 5658-5664. DOI: 10.1021/Acs.Cgd.9B00642  0.278
2019 Ward AR, Snow CD. Porous crystals as scaffolds for structural biology. Current Opinion in Structural Biology. 60: 85-92. PMID 31896427 DOI: 10.1016/J.Sbi.2019.12.008  0.278
2009 Heinzelman P, Snow CD, Smith MA, Yu X, Kannan A, Boulware K, Villalobos A, Govindarajan S, Minshull J, Arnold FH. SCHEMA recombination of a fungal cellulase uncovers a single mutation that contributes markedly to stability. The Journal of Biological Chemistry. 284: 26229-33. PMID 19625252 DOI: 10.1074/Jbc.C109.034058  0.277
2016 Kowalski AE, Huber TR, Ni TW, Hartje LF, Appel KL, Yost JW, Ackerson CJ, Snow CD. Gold nanoparticle capture within protein crystal scaffolds. Nanoscale. PMID 27264210 DOI: 10.1039/C6Nr03096C  0.271
2010 Heinzelman P, Komor R, Kanaan A, Romero P, Yu X, Mohler S, Snow C, Arnold F. Efficient screening of fungal cellobiohydrolase class i enzymes for thermostabilizing sequence blocks by SCHEMA structure-guided recombination Protein Engineering, Design and Selection. 23: 871-880. PMID 20847102 DOI: 10.1093/Protein/Gzq063  0.269
2009 Heinzelman P, Snow CD, Wu I, Nguyen C, Villalobos A, Govindarajan S, Minshull J, Arnold FH. A family of thermostable fungal cellulases created by structure-guided recombination. Proceedings of the National Academy of Sciences of the United States of America. 106: 5610-5. PMID 19307582 DOI: 10.1073/Pnas.0901417106  0.266
2011 Rentmeister A, Brown TR, Snow CD, Carbone MN, Arnold FH. Engineered Bacterial Mimics of Human Drug Metabolizing Enzyme CYP2C9 Chemcatchem. 3: 1065-1071. DOI: 10.1002/Cctc.201000452  0.263
2010 Lewis JC, Mantovani SM, Fu Y, Snow CD, Komor RS, Wong CH, Arnold FH. Combinatorial alanine substitution enables rapid optimization of cytochrome P450BM3 for selective hydroxylation of large substrates. Chembiochem : a European Journal of Chemical Biology. 11: 2502-5. PMID 21108271 DOI: 10.1002/Cbic.201000565  0.26
2015 Havird JC, Whitehill NS, Snow CD, Sloan DB. Conservative and compensatory evolution in oxidative phosphorylation complexes of angiosperms with highly divergent rates of mitochondrial genome evolution. Evolution; International Journal of Organic Evolution. PMID 26514987 DOI: 10.1111/Evo.12808  0.255
2008 Snow CD. Hunting for predictive computational drug-discovery models. Expert Review of Anti-Infective Therapy. 6: 291-3. PMID 18588493 DOI: 10.1586/14787210.6.3.291  0.252
2016 Reynolds EW, McHenry MW, Cannac F, Gober JG, Snow CD, Brustad EM. Correction to "An Evolved Orthogonal Enzyme/Cofactor Pair". Journal of the American Chemical Society. PMID 27759385 DOI: 10.1021/Jacs.6B10459  0.238
2015 Meyers JI, Gray M, Kuklinski W, Johnson LB, Snow CD, Black WC, Partin KM, Foy BD. Characterization of the target of ivermectin, the glutamate-gated chloride channel, from Anopheles gambiae. The Journal of Experimental Biology. 218: 1478-86. PMID 25994631 DOI: 10.1242/Jeb.118570  0.237
2011 Bastian S, Liu X, Meyerowitz JT, Snow CD, Chen MM, Arnold FH. Engineered ketol-acid reductoisomerase and alcohol dehydrogenase enable anaerobic 2-methylpropan-1-ol production at theoretical yield in Escherichia coli. Metabolic Engineering. 13: 345-52. PMID 21515217 DOI: 10.1016/J.Ymben.2011.02.004  0.233
2019 Rossmassler K, Snow CD, Taggart D, Brown C, De Long SK. Advancing biomarkers for anaerobic o-xylene biodegradation via metagenomic analysis of a methanogenic consortium. Applied Microbiology and Biotechnology. PMID 30968165 DOI: 10.1007/S00253-019-09762-7  0.23
2007 Li Y, Drummond DA, Sawayama AM, Snow CD, Bloom JD, Arnold FH. Erratum: Corrigendum: A diverse family of thermostable cytochrome P450s created by recombination of stabilizing fragments Nature Biotechnology. 25: 1488-1488. DOI: 10.1038/Nbt1207-1488D  0.224
2016 Johnson LB, Park S, Gintner LP, Snow CD. Characterization of supercharged cellulase activity and stability in ionic liquids Journal of Molecular Catalysis B: Enzymatic. 132: 84-90. DOI: 10.1016/J.Molcatb.2016.05.008  0.216
2020 Li Z, Sun G, Snow CD, Xu Y, Wang Y, Xiu D, Zhang Y, Zhu Z, Belfiore LA, Tang J. Near infrared emitting and biocompatible Yb3+-DNA complexes with dual responses to Cu2+ and Fe3+ Optical Materials. 108: 110157. DOI: 10.1016/J.Optmat.2020.110157  0.216
2021 Wang D, Stuart JD, Jones AA, Snow CD, Kipper MJ. Measuring interactions of DNA with nanoporous protein crystals by atomic force microscopy. Nanoscale. PMID 34124715 DOI: 10.1039/d1nr01703a  0.198
2018 Hartje LF, Bui HT, Andales DA, James SP, Huber TR, Snow CD. Characterizing the Cytocompatibility of Various Cross-Linking Chemistries for the Production of Biostable Large-Pore Protein Crystal Materials. Acs Biomaterials Science & Engineering. 4: 826-831. PMID 33418767 DOI: 10.1021/acsbiomaterials.8b00023  0.18
2018 Hartje LF, Bui HT, Andales DA, James SP, Huber TR, Snow CD. Characterizing the Cytocompatibility of Various Cross-Linking Chemistries for the Production of Biostable Large-Pore Protein Crystal Materials. Acs Biomaterials Science & Engineering. 4: 826-831. PMID 33418767 DOI: 10.1021/acsbiomaterials.8b00023  0.18
2021 Zhao Y, Yao Z, Snow CD, Xu Y, Wang Y, Xiu D, Belfiore LA, Tang J. Stable Fluorescence of Eu Complex Nanostructures Beneath a Protein Skin for Potential Biometric Recognition. Nanomaterials (Basel, Switzerland). 11. PMID 34578776 DOI: 10.3390/nano11092462  0.149
2023 Orun AR, Shields ET, Dmytriw S, Vajapayajula A, Slaughter CK, Snow CD. Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano. 17: 13110-13120. PMID 37407546 DOI: 10.1021/acsnano.2c07282  0.13
2022 Stuart JD, Hartman DA, Gray LI, Jones AA, Wickenkamp NR, Hirt C, Safira A, Regas AR, Kondash TM, Yates ML, Driga S, Snow CD, Kading RC. Mosquito tagging using DNA-barcoded nanoporous protein microcrystals. Pnas Nexus. 1: pgac190. PMID 36714845 DOI: 10.1093/pnasnexus/pgac190  0.122
2023 Wang D, Hedayati M, Stuart JD, Madruga LYC, Popat KC, Snow CD, Kipper MJ. Ligand Presentation Inside Protein Crystal Nanopores: Tunable Interfacial Adhesion Noncovalently Modulates Cell Attachment. Materials Today. Nano. 24. PMID 38370345 DOI: 10.1016/j.mtnano.2023.100432  0.12
2011 Farrow MF, Lee TM, Snow CD, Romero PP, Arnold FH. SCHEMA recombination reveals structural characteristics of active variants of Hypocrea jecorina Cel5a Acs National Meeting Book of Abstracts 0.117
2021 Dos Santos Passos C, Choi YS, Snow CD, Yao T, Cohen RE. Design of genetically encoded sensors to detect nucleosome ubiquitination in live cells. The Journal of Cell Biology. 220. PMID 33570569 DOI: 10.1083/jcb.201911130  0.117
2024 Hendricks AR, Cohen RS, McEwen GA, Tien T, Guilliams BF, Alspach A, Snow CD, Ackerson CJ. Laboratory Evolution of Metalloid Reductase Substrate Recognition and Nanoparticle Product Size. Acs Chemical Biology. PMID 38295274 DOI: 10.1021/acschembio.3c00493  0.109
2022 Xiu D, Zhao S, Li Z, Xu Y, Wang Y, Zhu Z, Zhang M, Snow CD, Belfiore LA, Tang J. Conditionally designed luminescent DNA crystals doped by Ln(Eu/Tb) complexes or fluorescent proteins with smart drug sensing property. Journal of Materials Chemistry. B. PMID 35703105 DOI: 10.1039/d2tb00847e  0.098
2023 Stuart JD, Wickenkamp NR, Davis KA, Meyer C, Kading RC, Snow CD. Scalable Combinatorial Assembly of Synthetic DNA for Tracking Applications. International Journal of Molecular Sciences. 24. PMID 36768872 DOI: 10.3390/ijms24032549  0.08
2010 Heinzelman P, Komor R, Kanaan A, Romero P, Yu X, Mohler S, Snow CD, Arnold FH. Efficient screening of natural fungal cellobiohydrolase genes for desirable mutations by SCHEMA structure-guided recombination 10aiche - 2010 Aiche Annual Meeting, Conference Proceedings 0.079
2004 Snow C. Flow cytometer electronics. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 57: 63-9. PMID 14750126 DOI: 10.1002/cyto.a.10120  0.058
1997 Carr RL, Snow CD, Youngson RA. Design & implementation of an automated questionnaire. Studies in Health Technology and Informatics. 46: 88-93. PMID 10175461 DOI: 10.3233/978-1-60750-890-8-88  0.048
2022 Guo Y, Liu J, Tang Q, Li C, Zhang Y, Wang Y, Wang Y, Bi Y, Snow CD, Kipper MJ, Belfiore LA, Tang J. Lanthanide (Eu/Tb)-Loaded γ-Cyclodextrin Nano-Aggregates for Smart Sensing of the Anticancer Drug Irinotecan. International Journal of Molecular Sciences. 23. PMID 35743042 DOI: 10.3390/ijms23126597  0.042
2018 Wang D, Shen W, Tang J, Wang Y, Liu J, Wang X, Yang R, Snow CD, Huang L, Jiao J, Wang Y, Wang W, Belfiore LA. Enhancing the Power Conversion Efficiency for Polymer Solar Cells by Incorporating Luminescent Nanosolid Micelles as Light Converter Acs Applied Energy Materials. 1: 1445-1454. DOI: 10.1021/acsaem.7b00217  0.04
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