Guha Jayachandran, Ph.D. - Publications

2007 Stanford University, Palo Alto, CA 
theoretical methods to understand the physical properties of biological molecules

9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2009 Luttmann E, Ensign DL, Vaidyanathan V, Houston M, Rimon N, Øland J, Jayachandran G, Friedrichs M, Pande VS. Accelerating molecular dynamic simulation on the cell processor and Playstation 3. Journal of Computational Chemistry. 30: 268-74. PMID 18615421 DOI: 10.1002/Jcc.21054  1
2009 Beberg AL, Ensign DL, Jayachandran G, Khaliq S, Pande VS. Folding@home: Lessons from eight years of volunteer distributed computing Ipdps 2009 - Proceedings of the 2009 Ieee International Parallel and Distributed Processing Symposium. DOI: 10.1109/IPDPS.2009.5160922  1
2007 Jayachandran G, Vishal V, García AE, Pande VS. Local structure formation in simulations of two small proteins. Journal of Structural Biology. 157: 491-9. PMID 17098444 DOI: 10.1016/J.Jsb.2006.10.001  1
2006 Jayachandran G, Shirts MR, Park S, Pande VS. Parallelized-over-parts computation of absolute binding free energy with docking and molecular dynamics. The Journal of Chemical Physics. 125: 084901. PMID 16965051 DOI: 10.1063/1.2221680  1
2006 Jayachandran G, Vishal V, Pande VS. Using massively parallel simulation and Markovian models to study protein folding: examining the dynamics of the villin headpiece. The Journal of Chemical Physics. 124: 164902. PMID 16674165 DOI: 10.1063/1.2186317  1
2005 Zagrovic B, Jayachandran G, Millett IS, Doniach S, Pande VS. How large is an alpha-helix? Studies of the radii of gyration of helical peptides by small-angle X-ray scattering and molecular dynamics. Journal of Molecular Biology. 353: 232-41. PMID 16171817 DOI: 10.1016/J.Jmb.2005.08.053  1
2005 Fujitani H, Tanida Y, Ito M, Jayachandran G, Snow CD, Shirts MR, Sorin EJ, Pande VS. Direct calculation of the binding free energies of FKBP ligands. The Journal of Chemical Physics. 123: 084108. PMID 16164283 DOI: 10.1063/1.1999637  1
2004 Rhee YM, Sorin EJ, Jayachandran G, Lindahl E, Pande VS. Simulations of the role of water in the protein-folding mechanism. Proceedings of the National Academy of Sciences of the United States of America. 101: 6456-61. PMID 15090647 DOI: 10.1073/Pnas.0307898101  1
2004 Sorin EJ, Nakatani BJ, Rhee YM, Jayachandran G, Vishal V, Pande VS. Does native state topology determine the RNA folding mechanism? Journal of Molecular Biology. 337: 789-97. PMID 15033351 DOI: 10.1016/J.Jmb.2004.02.024  1
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