Year |
Citation |
Score |
2020 |
Guo M, Li Y, Su Y, Lambert T, Nogare DD, Moyle MW, Duncan LH, Ikegami R, Santella A, Rey-Suarez I, Green D, Beiriger A, Chen J, Vishwasrao H, Ganesan S, ... ... Shroff H, et al. Rapid image deconvolution and multiview fusion for optical microscopy. Nature Biotechnology. PMID 32601431 DOI: 10.1038/S41587-020-0560-X |
0.362 |
|
2019 |
Peluso EA, Updegrove TB, Chen J, Shroff H, Ramamurthi KS. A 2-dimensional ratchet model describes assembly initiation of a specialized bacterial cell surface. Proceedings of the National Academy of Sciences of the United States of America. PMID 31597735 DOI: 10.1073/Pnas.1907397116 |
0.32 |
|
2019 |
Chandler T, Shroff H, Oldenbourg R, Rivière P. Spatio-angular fluorescence microscopy II. Paraxial 4f imaging. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 36: 1346-1360. PMID 31503560 DOI: 10.1364/Josaa.36.001346 |
0.322 |
|
2019 |
Chandler T, Shroff H, Oldenbourg R, La Rivière P. Spatio-angular fluorescence microscopy I. Basic theory. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 36: 1334-1345. PMID 31503559 DOI: 10.1364/Josaa.36.001334 |
0.319 |
|
2019 |
Duncan LH, Moyle MW, Shao L, Sengupta T, Ikegami R, Kumar A, Guo M, Christensen R, Santella A, Bao Z, Shroff H, Mohler W, Colón-Ramos DA. Isotropic Light-Sheet Microscopy and Automated Cell Lineage Analyses to Catalogue Caenorhabditis elegans Embryogenesis with Subcellular Resolution. Journal of Visualized Experiments : Jove. PMID 31233035 DOI: 10.3791/59533 |
0.37 |
|
2018 |
Wu Y, Shroff H. Faster, sharper, and deeper: structured illumination microscopy for biological imaging. Nature Methods. PMID 30478322 DOI: 10.1038/S41592-018-0211-Z |
0.332 |
|
2018 |
Markwardt ML, Snell NE, Guo M, Wu Y, Christensen R, Liu H, Shroff H, Rizzo MA. A Genetically Encoded Biosensor Strategy for Quantifying Non-muscle Myosin II Phosphorylation Dynamics in Living Cells and Organisms. Cell Reports. 24: 1060-1070.e4. PMID 30044973 DOI: 10.1016/J.Celrep.2018.06.088 |
0.306 |
|
2018 |
Xu M, Wu Y, Shroff H, Wu M, Mani M. A scheme for 3-dimensional morphological reconstruction and force inference in the early C. elegans embryo. Plos One. 13: e0199151. PMID 29990323 DOI: 10.1371/Journal.Pone.0199151 |
0.339 |
|
2018 |
Shroff H. Biological Imaging at High Spatiotemporal Resolution Microscopy and Microanalysis. 24: 1350-1351. DOI: 10.1017/S1431927618007237 |
0.32 |
|
2017 |
Wu Y, Kumar A, Smith C, Ardiel E, Chandris P, Christensen R, Rey-Suarez I, Guo M, Vishwasrao HD, Chen J, Tang J, Upadhyaya A, La Riviere PJ, Shroff H. Reflective imaging improves spatiotemporal resolution and collection efficiency in light sheet microscopy. Nature Communications. 8: 1452. PMID 29129912 DOI: 10.1038/S41467-017-01250-8 |
0.373 |
|
2017 |
Giannini JP, York AG, Shroff H. Anticipating, measuring, and minimizing MEMS mirror scan error to improve laser scanning microscopy's speed and accuracy. Plos One. 12: e0185849. PMID 28973013 DOI: 10.1371/Journal.Pone.0185849 |
0.307 |
|
2017 |
Kieffer-Kwon KR, Nimura K, Rao SSP, Xu J, Jung S, Pekowska A, Dose M, Stevens E, Mathe E, Dong P, Huang SC, Ricci MA, Baranello L, Zheng Y, Ardori FT, ... ... Shroff H, et al. Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation. Molecular Cell. PMID 28803781 DOI: 10.1016/J.Molcel.2017.07.013 |
0.302 |
|
2017 |
Laissue PP, Alghamdi RA, Tomancak P, Reynaud EG, Shroff H. Assessing phototoxicity in live fluorescence imaging. Nature Methods. 14: 657-661. PMID 28661494 DOI: 10.1038/Nmeth.4344 |
0.319 |
|
2017 |
Zheng W, Wu Y, Winter P, Fischer R, Nogare DD, Hong A, McCormick C, Christensen R, Dempsey WP, Arnold DB, Zimmerberg J, Chitnis A, Sellers J, Waterman C, Shroff H. Adaptive optics improves multiphoton super-resolution imaging. Nature Methods. PMID 28628128 DOI: 10.1038/Nmeth.4337 |
0.331 |
|
2017 |
Trcek T, Lionnet T, Shroff H, Lehmann R. mRNA quantification using single-molecule FISH in Drosophila embryos. Nature Protocols. 12: 1326-1348. PMID 28594816 DOI: 10.1038/Nprot.2017.030 |
0.333 |
|
2017 |
Combs CA, Shroff H. Fluorescence Microscopy: A Concise Guide to Current Imaging Methods. Current Protocols in Neuroscience. 79: 2.1.1-2.1.25. PMID 28398640 DOI: 10.1002/Cpns.29 |
0.348 |
|
2016 |
Kumar A, Christensen R, Guo M, Chandris P, Duncan W, Wu Y, Santella A, Moyle M, Winter PW, Colón-Ramos D, Bao Z, Shroff H. Using Stage- and Slit-Scanning to Improve Contrast and Optical Sectioning in Dual-View Inverted Light Sheet Microscopy (diSPIM). The Biological Bulletin. 231: 26-39. PMID 27638693 DOI: 10.1086/689589 |
0.342 |
|
2015 |
Curd A, Cleasby A, Makowska K, York A, Shroff H, Peckham M. Construction of an instant structured illumination microscope. Methods (San Diego, Calif.). 88: 37-47. PMID 26210400 DOI: 10.1016/J.Ymeth.2015.07.012 |
0.388 |
|
2015 |
Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. Bmc Bioinformatics. 16: 189. PMID 26051157 DOI: 10.1186/S12859-015-0627-8 |
0.3 |
|
2015 |
Winter PW, Chandris P, Fischer RS, Wu Y, Waterman CM, Shroff H. Incoherent structured illumination improves optical sectioning and contrast in multiphoton super-resolution microscopy. Optics Express. 23: 5327-34. PMID 25836564 DOI: 10.1364/Oe.23.005327 |
0.344 |
|
2015 |
Temprine K, York AG, Shroff H. Three-dimensional photoactivated localization microscopy with genetically expressed probes. Methods in Molecular Biology (Clifton, N.J.). 1251: 231-61. PMID 25391803 DOI: 10.1007/978-1-4939-2080-8_13 |
0.356 |
|
2015 |
Christensen R, Bokinsky A, Santella A, Wu Y, Marquina J, Kovacevic I, Kumar A, Winter P, McCreedy E, Mohler W, Bao Z, Colón-Ramos D, Shroff H. An imaging and analysis toolset for the study of Caenorhabditis elegans neurodevelopment Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9334. DOI: 10.1117/12.2082394 |
0.316 |
|
2014 |
Kumar A, Wu Y, Christensen R, Chandris P, Gandler W, McCreedy E, Bokinsky A, Colón-Ramos DA, Bao Z, McAuliffe M, Rondeau G, Shroff H. Dual-view plane illumination microscopy for rapid and spatially isotropic imaging. Nature Protocols. 9: 2555-73. PMID 25299154 DOI: 10.1038/Nprot.2014.172 |
0.333 |
|
2014 |
Winter PW, Shroff H. Faster fluorescence microscopy: advances in high speed biological imaging. Current Opinion in Chemical Biology. 20: 46-53. PMID 24815857 DOI: 10.1016/J.Cbpa.2014.04.008 |
0.354 |
|
2014 |
Ingaramo M, York AG, Hoogendoorn E, Postma M, Shroff H, Patterson GH. Richardson-Lucy deconvolution as a general tool for combining images with complementary strengths. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 794-800. PMID 24436314 DOI: 10.1002/Cphc.201300831 |
0.343 |
|
2013 |
Zhao H, Casillas E, Shroff H, Patterson GH, Schuck P. Tools for the Quantitative Analysis of Sedimentation Boundaries Detected by Fluorescence Optical Analytical Ultracentrifugation Plos One. 8. PMID 24204779 DOI: 10.1371/Journal.Pone.0077245 |
0.304 |
|
2013 |
Wu Y, Wawrzusin P, Senseney J, Fischer RS, Christensen R, Santella A, York AG, Winter PW, Waterman CM, Bao Z, Colón-Ramos DA, McAuliffe M, Shroff H. Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy. Nature Biotechnology. 31: 1032-8. PMID 24108093 DOI: 10.1038/Nbt.2713 |
0.351 |
|
2013 |
York AG, Chandris P, Nogare DD, Head J, Wawrzusin P, Fischer RS, Chitnis A, Shroff H. Instant super-resolution imaging in live cells and embryos via analog image processing. Nature Methods. 10: 1122-6. PMID 24097271 DOI: 10.1038/Nmeth.2687 |
0.376 |
|
2013 |
Wu Y, Christensen R, Colón-Ramos D, Shroff H. Advanced optical imaging techniques for neurodevelopment. Current Opinion in Neurobiology. 23: 1090-7. PMID 23831260 DOI: 10.1016/J.Conb.2013.06.008 |
0.36 |
|
2013 |
Takagi Y, Ushakov D, Ma X, Temprine K, Sellers JR, Shroff H, Peckham M. 3D Palm Shows Distinct Distributions of Z-Disc Proteins with the Z-Discs in Cardiomyocytes Biophysical Journal. 104: 485a. DOI: 10.1016/J.Bpj.2012.11.2676 |
0.318 |
|
2012 |
York AG, Parekh SH, Dalle Nogare D, Fischer RS, Temprine K, Mione M, Chitnis AB, Combs CA, Shroff H. Resolution doubling in live, multicellular organisms via multifocal structured illumination microscopy. Nature Methods. 9: 749-54. PMID 22581372 DOI: 10.1038/Nmeth.2025 |
0.377 |
|
2011 |
Fischer RS, Wu Y, Kanchanawong P, Shroff H, Waterman CM. Microscopy in 3D: a biologist's toolbox. Trends in Cell Biology. 21: 682-91. PMID 22047760 DOI: 10.1016/J.Tcb.2011.09.008 |
0.351 |
|
2011 |
Wu Y, Ghitani A, Christensen R, Santella A, Du Z, Rondeau G, Bao Z, Colón-Ramos D, Shroff H. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 108: 17708-13. PMID 22006307 DOI: 10.1073/Pnas.1108494108 |
0.334 |
|
2011 |
York AG, Ghitani A, Vaziri A, Davidson MW, Shroff H. Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes. Nature Methods. 8: 327-33. PMID 21317909 DOI: 10.1038/Nmeth.1571 |
0.362 |
|
2010 |
Frost NA, Shroff H, Kong H, Betzig E, Blanpied TA. Single-molecule discrimination of discrete perisynaptic and distributed sites of actin filament assembly within dendritic spines. Neuron. 67: 86-99. PMID 20624594 DOI: 10.1016/J.Neuron.2010.05.026 |
0.613 |
|
2009 |
Greenfield D, McEvoy AL, Shroff H, Crooks GE, Wingreen NS, Betzig E, Liphardt J. Self-organization of the Escherichia coli chemotaxis network imaged with super-resolution light microscopy. Plos Biology. 7: e1000137. PMID 19547746 DOI: 10.1371/Journal.Pbio.1000137 |
0.604 |
|
2009 |
Vaziri A, Tang J, Shroff H, Shank CV. Multilayer and three-dimensional super-resolution imaging of thick biological samples Optics Infobase Conference Papers. DOI: 10.1364/Ntm.2009.Nmb1 |
0.35 |
|
2009 |
Vaziri A, Tang J, Shroff H, Shank C. Three-dimensional super-resolution imaging of thick biological samples Microscopy and Microanalysis. 15: 36-37. DOI: 10.1017/S1431927609092368 |
0.312 |
|
2008 |
Ji N, Shroff H, Zhong H, Betzig E. Advances in the speed and resolution of light microscopy. Current Opinion in Neurobiology. 18: 605-16. PMID 19375302 DOI: 10.1016/J.Conb.2009.03.009 |
0.359 |
|
2008 |
Vaziri A, Tang J, Shroff H, Shank CV. Multilayer three-dimensional super resolution imaging of thick biological samples Proceedings of the National Academy of Sciences of the United States of America. 105: 20221-20226. PMID 19088193 DOI: 10.1016/J.Bpj.2008.12.989 |
0.395 |
|
2008 |
Shroff H, White H, Betzig E. Photoactivated localization microscopy (PALM) of adhesion complexes. Current Protocols in Cell Biology / Editorial Board, Juan S. Bonifacino ... [Et Al.]. Unit 4.21. PMID 19085989 DOI: 10.1002/0471143030.Cb0421S41 |
0.381 |
|
2008 |
Shroff H, Galbraith CG, Galbraith JA, Betzig E. Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics. Nature Methods. 5: 417-23. PMID 18408726 DOI: 10.1038/Nmeth.1202 |
0.362 |
|
2008 |
Manley S, Gillette JM, Patterson GH, Shroff H, Hess HF, Betzig E, Lippincott-Schwartz J. High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nature Methods. 5: 155-7. PMID 18193054 DOI: 10.1038/Nmeth.1176 |
0.322 |
|
2008 |
Shroff H, Sivak D, Siegel JJ, McEvoy AL, Siu M, Spakowitz A, Geissler PL, Liphardt J. Optical measurement of mechanical forces inside short DNA loops. Biophysical Journal. 94: 2179-86. PMID 18065484 DOI: 10.1529/Biophysj.107.114413 |
0.652 |
|
2007 |
Shroff H, Galbraith CG, Galbraith JA, White H, Gillette J, Olenych S, Davidson MW, Betzig E. Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes. Proceedings of the National Academy of Sciences of the United States of America. 104: 20308-13. PMID 18077327 DOI: 10.1073/Pnas.0710517105 |
0.384 |
|
2006 |
Pauzauskie PJ, Radenovic A, Trepagnier E, Shroff H, Yang P, Liphardt J. Optical trapping and integration of semiconductor nanowire assemblies in water. Nature Materials. 5: 97-101. PMID 16429143 DOI: 10.1038/Nmat1563 |
0.62 |
|
2005 |
Shroff H, Reinhard BM, Siu M, Agarwal H, Spakowitz A, Liphardt J. Biocompatible force sensor with optical readout and dimensions of 6 nm3. Nano Letters. 5: 1509-14. PMID 16178266 DOI: 10.1021/Nl050875H |
0.684 |
|
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