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Nicholas Stephanopoulos, Ph.D. - Publications

Affiliations: 
2010 Chemistry University of California, Berkeley, Berkeley, CA, United States 
Area:
Organic, Bioorganic, and Materials Chemistry
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30/73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Narayanan RP, Prasad A, Buchberger A, Zou L, Bernal-Chanchavac J, MacCulloch T, Fahmi NE, Yan H, Zhang F, Webber MJ, Stephanopoulos N. High-Affinity Host-Guest Recognition for Efficient Assembly and Enzymatic Responsiveness of DNA Nanostructures. Small (Weinheim An Der Bergstrasse, Germany). e2307585. PMID 37849034 DOI: 10.1002/smll.202307585  0.317
2022 Liu AP, Appel EA, Ashby PD, Baker BM, Franco E, Gu L, Haynes K, Joshi NS, Kloxin AM, Kouwer PHJ, Mittal J, Morsut L, Noireaux V, Parekh S, Schulman R, ... ... Stephanopoulos N, et al. The living interface between synthetic biology and biomaterial design. Nature Materials. 21: 390-397. PMID 35361951 DOI: 10.1038/s41563-022-01231-3  0.578
2021 Bernal-Chanchavac J, Al-Amin M, Stephanopoulos N. Nanoscale structures and materials from the self-assembly of polypeptides and DNA. Current Topics in Medicinal Chemistry. PMID 34911426 DOI: 10.2174/1568026621666211215142916  0.347
2021 Henry SJW, Stephanopoulos N. Functionalizing DNA nanostructures for therapeutic applications. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. e1729. PMID 34008347 DOI: 10.1002/wnan.1729  0.314
2020 Stephanopoulos N, Simmons CR, MacCulloch T, Zhang F, Liu Y, Yan H. A Self-Assembled Rhombohedral DNA Crystal Scaffold with Tunable Cavity Sizes and High Resolution Structural Detail. Angewandte Chemie (International Ed. in English). PMID 32533629 DOI: 10.1002/Anie.202005505  0.32
2020 Xu Y, Jiang S, Simmons CR, Narayanan RP, Zhang F, Aziz AM, Yan H, Stephanopoulos N. Correction to Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks. Acs Nano. PMID 32420729 DOI: 10.1021/Acsnano.0C02484  0.395
2020 Stephanopoulos N. Hybrid Nanostructures from the Self-Assembly of Proteins and DNA Chem. 6: 364-405. DOI: 10.1016/J.Chempr.2020.01.012  0.394
2019 Buchberger A, Simmons CR, Fahmi NE, Freeman R, Stephanopoulos N. Hierarchical assembly of DNA origami nanostructures using coiled-coil peptides. Journal of the American Chemical Society. PMID 31820959 DOI: 10.1021/Jacs.9B11158  0.428
2019 Stephanopoulos N. Peptide-Oligonucleotide Hybrid Molecules for Bioactive Nanomaterials. Bioconjugate Chemistry. PMID 31082220 DOI: 10.1021/Acs.Bioconjchem.9B00259  0.356
2019 Stephanopoulos N. Strategies for stabilizing DNA nanostructures to biological conditions. Chembiochem : a European Journal of Chemical Biology. PMID 30875443 DOI: 10.1002/Cbic.201900075  0.393
2019 Stelson AC, Liu M, Little CAE, Long CJ, Orloff ND, Stephanopoulos N, Booth JC. Label-free detection of conformational changes in switchable DNA nanostructures with microwave microfluidics. Nature Communications. 10: 1174. PMID 30862776 DOI: 10.1038/S41467-019-09017-Z  0.326
2019 Xu Y, Jiang S, Simmons CR, Narayanan RP, Zhang F, Aziz AM, Yan H, Stephanopoulos N. Tunable Nanoscale Cages from Self-Assembling DNA and Protein Building Blocks. Acs Nano. PMID 30835439 DOI: 10.1021/Acsnano.8B09798  0.41
2019 Simmons CR, MacCulloch T, Zhang F, Liu Y, Stephanopoulos N, Yan H. Structure of a self-assembled three-dimensional DNA crystal framework for the precise organization of biomaterials Acta Crystallographica Section a Foundations and Advances. 75: a144-a144. DOI: 10.1107/S0108767319098556  0.365
2018 MacCulloch T, Buchberger A, Stephanopoulos N. Emerging applications of peptide-oligonucleotide conjugates: bioactive scaffolds, self-assembling systems, and hybrid nanomaterials. Organic & Biomolecular Chemistry. PMID 30483688 DOI: 10.1039/C8Ob02436G  0.394
2018 Freeman R, Han M, Álvarez Z, Lewis JA, Wester JR, Stephanopoulos N, McClendon MT, Lynsky C, Godbe JM, Sangji H, Luijten E, Stupp SI. Reversible self-assembly of superstructured networks. Science (New York, N.Y.). PMID 30287619 DOI: 10.1126/Science.Aat6141  0.399
2018 Stephanopoulos N, Liu M, Jiang S, Loza O, Šulc P, Fahmi NE. Rapid photo-actuation of a DNA nanostructure using an internal photocaged trigger strand. Angewandte Chemie (International Ed. in English). PMID 29790232 DOI: 10.1002/Anie.201804264  0.348
2017 Matsuoka AJ, Sayed ZA, Stephanopoulos N, Berns EJ, Wadhwani AR, Morrissey ZD, Chadly DM, Kobayashi S, Edelbrock AN, Mashimo T, Miller CA, McGuire TL, Stupp SI, Kessler JA. Creating a stem cell niche in the inner ear using self-assembling peptide amphiphiles. Plos One. 12: e0190150. PMID 29284013 DOI: 10.1371/Journal.Pone.0190150  0.315
2017 Simmons CR, Zhang F, MacCulloch T, Fahmi NE, Stephanopoulos N, Liu Y, Seeman NC, Yan H. Tuning the Cavity Size and Chirality of Self-Assembling 3D DNA Crystals. Journal of the American Chemical Society. PMID 28731332 DOI: 10.1021/Jacs.7B06485  0.395
2017 Freeman R, Stephanopoulos N, Álvarez Z, Lewis JA, Sur S, Serrano CM, Boekhoven J, Lee SS, Stupp SI. Instructing cells with programmable peptide DNA hybrids. Nature Communications. 8: 15982. PMID 28691701 DOI: 10.1038/Ncomms15982  0.35
2017 Simmons CR, Zhang F, MacCulloch T, Fahmi NE, Stephanopoulos N, Liu Y, Yan H. Enantiomeric structures of a self-assembling three-dimensional DNA crystal scaffold Acta Crystallographica Section a Foundations and Advances. 73: a53-a53. DOI: 10.1107/S0108767317099470  0.369
2015 Rubert Pérez CM, Stephanopoulos N, Sur S, Lee SS, Newcomb C, Stupp SI. The powerful functions of peptide-based bioactive matrices for regenerative medicine. Annals of Biomedical Engineering. 43: 501-14. PMID 25366903 DOI: 10.1007/S10439-014-1166-6  0.303
2013 Sack JT, Stephanopoulos N, Austin DC, Francis MB, Trimmer JS. Antibody-guided photoablation of voltage-gated potassium currents. The Journal of General Physiology. 142: 315-24. PMID 23940262 DOI: 10.1085/Jgp.201311023  0.478
2013 Stephanopoulos N, Ortony JH, Stupp SI. Self-Assembly for the Synthesis of Functional Biomaterials. Acta Materialia. 61: 912-930. PMID 23457423 DOI: 10.1016/J.Actamat.2012.10.046  0.413
2012 Stephanopoulos N, Francis MB. Making New Materials from Viral Capsids Polymer Science: a Comprehensive Reference, 10 Volume Set. 9: 247-266. DOI: 10.1016/B978-0-444-53349-4.00221-1  0.478
2011 Stephanopoulos N, Francis MB. Choosing an effective protein bioconjugation strategy Nature Chemical Biology. 7: 876-884. PMID 22086289 DOI: 10.1038/Nchembio.720  0.529
2010 Holder PG, Finley DT, Stephanopoulos N, Walton R, Clark DS, Francis MB. Dramatic thermal stability of virus-polymer conjugates in hydrophobic solvents. Langmuir : the Acs Journal of Surfaces and Colloids. 26: 17383-8. PMID 20964388 DOI: 10.1021/La1039305  0.68
2010 Stephanopoulos N, Tong GJ, Hsiao SC, Francis MB. Dual-surface modified virus capsids for targeted delivery of photodynamic agents to cancer cells. Acs Nano. 4: 6014-20. PMID 20863095 DOI: 10.1021/Nn1014769  0.666
2010 Stephanopoulos N, Liu M, Tong GJ, Li Z, Liu Y, Yan H, Francis MB. Immobilization and one-dimensional arrangement of virus capsids with nanoscale precision using DNA origami. Nano Letters. 10: 2714-20. PMID 20575574 DOI: 10.1021/Nl1018468  0.687
2010 Miller RA, Stephanopoulos N, McFarland JM, Rosko AS, Geissler PL, Francis MB. Impact of assembly state on the defect tolerance of TMV-based light harvesting arrays. Journal of the American Chemical Society. 132: 6068-74. PMID 20392093 DOI: 10.1021/Ja909566Z  0.68
2009 Stephanopoulos N, Carrico ZM, Francis MB. Nanoscale integration of sensitizing chromophores and porphyrins with bacteriophage MS2 Angewandte Chemie - International Edition. 48: 9498-9502. PMID 19921726 DOI: 10.1002/Anie.200902727  0.575
Low-probability matches (unlikely to be authored by this person)
2023 Buchberger A, Al-Amin M, Simmons CR, Stephanopoulos N. Self-assembly of hybrid peptide-DNA nanostructures using homotrimeric coiled-coil/nucleic acid building blocks. Chembiochem : a European Journal of Chemical Biology. e202300223. PMID 37099451 DOI: 10.1002/cbic.202300223  0.296
2015 Stephanopoulos N, Freeman R, North HA, Sur S, Jeong SJ, Tantakitti F, Kessler JA, Stupp SI. Bioactive DNA-peptide nanotubes enhance the differentiation of neural stem cells into neurons. Nano Letters. 15: 603-9. PMID 25546084 DOI: 10.1021/Nl504079Q  0.295
2022 Buchberger A, Riker K, Bernal-Chanchavac J, Narayanan RP, Simmons CR, Fahmi NE, Freeman R, Stephanopoulos N. Bioactive Fibronectin-III-DNA Origami Nanofibers Promote Cell Adhesion and Spreading. Acs Applied Bio Materials. PMID 36108278 DOI: 10.1021/acsabm.2c00303  0.292
2024 Lu Q, Xu Y, Poppleton E, Zhou K, Sulc P, Stephanopoulos N, Ke Y. DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes. Nano Letters. PMID 38278134 DOI: 10.1021/acs.nanolett.3c04497  0.285
2022 Frtús A, Smolková B, Uzhytchak M, Lunova M, Jirsa M, Henry SJW, Dejneka A, Stephanopoulos N, Lunov O. The interactions between DNA nanostructures and cells: A critical overview from a cell biology perspective. Acta Biomaterialia. PMID 35523414 DOI: 10.1016/j.actbio.2022.04.046  0.279
2005 Stephanopoulos N, Solls EOP, Stephanopoulos G. Nanoscale process systems engineering: Toward molecular factories, synthetic cells, and adaptive devices Aiche Journal. 51: 1858-1869. DOI: 10.1002/Aic.10618  0.271
2021 Smolková B, MacCulloch T, Rockwood TF, Liu M, Henry SJW, Frtús A, Uzhytchak M, Lunova M, Hof M, Jurkiewicz P, Dejneka A, Stephanopoulos N, Lunov O. Protein Corona Inhibits Endosomal Escape of Functionalized DNA Nanostructures in Living Cells. Acs Applied Materials & Interfaces. 13: 46375-46390. PMID 34569777 DOI: 10.1021/acsami.1c14401  0.27
2016 Varun D, Rajaram Srinivasan G, Tsai YH, Kim HJ, Cutts J, Petty F, Merkley R, Stephanopoulos N, Dolezalova D, Marsala M, Brafman DA. A robust vitronectin-derived peptide for the scalable long-term expansion and neuronal differentiation of human pluripotent stem cell (hPSC)-derived neural progenitor cells (hNPCs). Acta Biomaterialia. PMID 27989923 DOI: 10.1016/J.Actbio.2016.10.037  0.268
2021 Gangrade A, Stephanopoulos N, Bhatia D. Programmable, self-assembled DNA nanodevices for cellular programming and tissue engineering. Nanoscale. 13: 16834-16846. PMID 34622910 DOI: 10.1039/d1nr04475c  0.263
2021 Stephanopoulos N. Reversible Control of Gelatin Hydrogel Stiffness using DNA Crosslinkers. Chembiochem : a European Journal of Chemical Biology. PMID 33484601 DOI: 10.1002/cbic.202100030  0.26
2020 Fumasi FM, Stephanopoulos N, Holloway JL. Reversible control of biomaterial properties for dynamically tuning cell behavior Journal of Applied Polymer Science. 137: 49058. DOI: 10.1002/App.49058  0.253
2023 Yu L, Xu Y, Al-Amin M, Jiang S, Sample M, Prasad A, Stephanopoulos N, Šulc P, Yan H. CytoDirect: A Nucleic Acid Nanodevice for Specific and Efficient Delivery of Functional Payloads to the Cytoplasm. Journal of the American Chemical Society. PMID 38055928 DOI: 10.1021/jacs.3c07491  0.247
2014 Li A, Hokugo A, Yalom A, Berns EJ, Stephanopoulos N, McClendon MT, Segovia LA, Spigelman I, Stupp SI, Jarrahy R. A bioengineered peripheral nerve construct using aligned peptide amphiphile nanofibers. Biomaterials. 35: 8780-90. PMID 25064803 DOI: 10.1016/J.Biomaterials.2014.06.049  0.238
2022 Narayanan RP, Procyk J, Nandi P, Prasad A, Xu Y, Poppleton E, Williams D, Zhang F, Yan H, Chiu PL, Stephanopoulos N, Šulc P. Coarse-Grained Simulations for the Characterization and Optimization of Hybrid Protein-DNA Nanostructures. Acs Nano. PMID 35980981 DOI: 10.1021/acsnano.2c04013  0.235
2023 Fumasi FM, MacCulloch T, Bernal-Chanchavac J, Stephanopoulos N, Holloway JL. Using dynamic biomaterials to study the temporal role of bioactive peptides during osteogenesis. Biomaterials Advances. 157: 213726. PMID 38096646 DOI: 10.1016/j.bioadv.2023.213726  0.225
2018 Greene JJ, McClendon MT, Stephanopoulos N, Álvarez Z, Stupp SI, Richter CP. Electrophysiological Assessment of a Peptide Amphiphile Nanofiber Nerve Graft for Facial Nerve Repair. Journal of Tissue Engineering and Regenerative Medicine. PMID 29701919 DOI: 10.1002/Term.2669  0.222
2023 Simmons CR, Buchberger A, Henry SJW, Novacek A, Fahmi NE, MacCulloch T, Stephanopoulos N, Yan H. Site-Specific Arrangement and Structure Determination of Minor Groove Binding Molecules in Self-Assembled Three-Dimensional DNA Crystals. Journal of the American Chemical Society. PMID 37987645 DOI: 10.1021/jacs.3c07802  0.221
2023 Simmons CR, Buchberger A, Henry SJW, Novacek A, Fahmi NE, MacCulloch T, Stephanopoulos N, Yan H. Site-specific arrangement and structure determination of minor groove binding molecules in self-assembled three-dimensional DNA crystals. Biorxiv : the Preprint Server For Biology. PMID 37873139 DOI: 10.1101/2023.10.10.561756  0.221
2023 Fumasi FM, MacCulloch T, Bernal-Chanchavac J, Stephanopoulos N, Holloway JL. Using dynamic biomaterials to study the temporal role of osteogenic growth peptide during osteogenesis. Biorxiv : the Preprint Server For Biology. PMID 37502890 DOI: 10.1101/2023.07.19.549767  0.221
2022 Simmons CR, MacCulloch T, Krepl M, Matthies M, Buchberger A, Crawford I, Šponer J, Šulc P, Stephanopoulos N, Yan H. The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nature Communications. 13: 3112. PMID 35662248 DOI: 10.1038/s41467-022-30779-6  0.214
2023 Xu Y, Zheng R, Prasad A, Liu M, Wan Z, Zhou X, Porter RM, Sample M, Poppleton E, Procyk J, Liu H, Li Y, Wang S, Yan H, Sulc P, ... Stephanopoulos N, et al. High-affinity binding to the SARS-CoV-2 spike trimer by a nanostructured, trivalent protein-DNA synthetic antibody. Biorxiv : the Preprint Server For Biology. PMID 37790307 DOI: 10.1101/2023.09.18.558353  0.209
2023 Zhang Z, Šponer J, Bussi G, Mlýnský V, Šulc P, Simmons CR, Stephanopoulos N, Krepl M. Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of Chemical Information and Modeling. 63: 2794-2809. PMID 37126365 DOI: 10.1021/acs.jcim.3c00358  0.191
2022 MacCulloch T, Novacek A, Stephanopoulos N. Proximity-enhanced synthesis of DNA-peptide-DNA triblock molecules. Chemical Communications (Cambridge, England). 58: 4044-4047. PMID 35260875 DOI: 10.1039/d1cc04970d  0.185
2020 Fumasi FM, Stephanopoulos N, Holloway JL. Reversible control of biomaterial properties for dynamically tuning cell behavior. Journal of Applied Polymer Science. 137. PMID 34054139 DOI: 10.1002/app.49058  0.18
2021 Yuan T, Shao Y, Zhou X, Liu Q, Zhu Z, Zhou B, Dong Y, Stephanopoulos N, Gui S, Yan H, Liu D. Highly Permeable DNA Supramolecular Hydrogel Promotes Neurogenesis and Functional Recovery after Completely Transected Spinal Cord Injury. Advanced Materials (Deerfield Beach, Fla.). e2102428. PMID 34296471 DOI: 10.1002/adma.202102428  0.142
2015 Stephanopoulos NO, McGhee EM. Partisan gerrymandering and the efficiency gap University of Chicago Law Review. 82: 831-900.  0.122
2024 Teng T, Bernal-Chanchavac J, Stephanopoulos N, Castro CE. Construction of Reconfigurable and Polymorphic DNA Origami Assemblies with Coiled-Coil Patches and Patterns. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2307257. PMID 38459678 DOI: 10.1002/advs.202307257  0.12
2023 Hsu YY, Chen SJ, Bernal-Chanchavac J, Sharma B, Moghimianavval H, Stephanopoulos N, Liu AP. Calcium-triggered DNA-mediated membrane fusion in synthetic cells. Chemical Communications (Cambridge, England). 59: 8806-8809. PMID 37365952 DOI: 10.1039/d3cc02204h  0.118
2023 Hsu YY, Samuel JC, Bernal-Chanchavac J, Moghimianavval H, Stephanopoulos N, Liu AP. Calcium-triggered DNA-mediated membrane fusion in synthetic cells. Biorxiv : the Preprint Server For Biology. PMID 37205334 DOI: 10.1101/2023.05.06.539684  0.118
2022 Martinez BI, Mousa GA, Fleck K, MacCulloch T, Diehnelt CW, Stephanopoulos N, Stabenfeldt SE. Uncovering temporospatial sensitive TBI targeting strategies via in vivo phage display. Science Advances. 8: eabo5047. PMID 35867794 DOI: 10.1126/sciadv.abo5047  0.104
2019 Mahatmanto T, Azizah I, Buchberger A, Stephanopoulos N. Progress toward sourcing plants for new bioconjugation tools: a screening evaluation of a model peptide ligase using a synthetic precursor. 3 Biotech. 9: 442. PMID 31763120 DOI: 10.1007/s13205-019-1983-2  0.063
2014 Stephanopoulos NO. Elections and alignment Columbia Law Review. 114: 283-365.  0.058
2013 Stephanopoulos NO. Our electoral exceptionalism University of Chicago Law Review. 80: 769-858.  0.037
2015 Stephanopoulos NO. Aligning campaign finance law Virginia Law Review. 101: 1425-1500.  0.036
2012 Stephanopoulos NO. Spatial diversity Harvard Law Review. 125: 1909-2010.  0.029
2005 Stephanopoulos N. Solving the due process problem with military commissions Yale Law Journal. 114: 921-928.  0.029
2015 Stephanopoulos NO, McGhee EM, Rogers S. The realities of electoral reform Vanderbilt Law Review. 68: 761-853.  0.02
2014 Stephanopoulos NO. Teaching Election Law Election Law Journal: Rules, Politics, and Policy. 13: 447-457. DOI: 10.1089/elj.2014.0260  0.012
2017 Posner EA, Stephanopoulos NO. Quadratic election law Public Choice. 172: 265-282. DOI: 10.1007/s11127-017-0415-2  0.012
2020 Stephanopoulos NO. The Anti-Carolene Court The Supreme Court Review. 2019: 111-182. DOI: 10.1086/707592  0.01
2015 Stephanopoulos NO. Political powerlessness New York University Law Review. 90: 1527-1608.  0.01
2013 Stephanopoulos NO. The south after shelby county Supreme Court Review. 2013: 55-134. DOI: 10.1086/675346  0.01
2012 Stephanopoulos NO. Redistricting and the territorial community University of Pennsylvania Law Review. 160: 1379-1477.  0.01
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