Jun Shimada, Ph.D. - Publications
Affiliations: | 2002 | Harvard University, Cambridge, MA, United States |
Area:
Protein Folding and Design, Molecular Evolution, Drug DiscoveryYear | Citation | Score | |||
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2004 | Hubner IA, Shimada J, Shakhnovich EI. Commitment and nucleation in the protein G transition state. Journal of Molecular Biology. 336: 745-61. PMID 15095985 DOI: 10.1016/J.Jmb.2003.12.032 | 0.715 | |||
2003 | Kussell E, Shimada J, Shakhnovich EI. Side-chain dynamics and protein folding. Proteins. 52: 303-21. PMID 12833553 DOI: 10.1002/Prot.10426 | 0.738 | |||
2002 | Shimada J, Shakhnovich EI. The ensemble folding kinetics of protein G from an all-atom Monte Carlo simulation. Proceedings of the National Academy of Sciences of the United States of America. 99: 11175-80. PMID 12165568 DOI: 10.1073/Pnas.162268099 | 0.669 | |||
2002 | Grzybowski BA, Ishchenko AV, Shimada J, Shakhnovich EI. From knowledge-based potentials to combinatorial lead design in silico. Accounts of Chemical Research. 35: 261-9. PMID 12020163 DOI: 10.1021/Ar970146B | 0.644 | |||
2002 | Kussell E, Shimada J, Shakhnovich EI. A structure-based method for derivation of all-atom potentials for protein folding. Proceedings of the National Academy of Sciences of the United States of America. 99: 5343-8. PMID 11943859 DOI: 10.1073/Pnas.072665799 | 0.737 | |||
2002 | Shimada J, Ekins S, Elkin C, Shakhnovich EI, Wery JP. Integrating computer-based de novo drug design and multidimensional filtering for desirable drugs Drug Discovery Today: Targets. 1: 196-205. DOI: 10.1016/S1477-3627(02)02274-2 | 0.459 | |||
2001 | Kussell E, Shimada J, Shakhnovich EI. Excluded volume in protein side-chain packing. Journal of Molecular Biology. 311: 183-93. PMID 11469867 DOI: 10.1006/Jmbi.2001.4846 | 0.725 | |||
2001 | Shimada J, Kussell EL, Shakhnovich EI. The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation. Journal of Molecular Biology. 308: 79-95. PMID 11302709 DOI: 10.1006/Jmbi.2001.4586 | 0.756 | |||
2000 | Shimada J, Ishchenko AV, Shakhnovich EI. Analysis of knowledge-based protein-ligand potentials using a self-consistent method. Protein Science : a Publication of the Protein Society. 9: 765-75. PMID 10794420 DOI: 10.1110/Ps.9.4.765 | 0.684 | |||
2000 | Shakhnovich E, Kussell E, Shimada J. Folding thermodynamics and kinetics in all-atom simulations Journal of Molecular Graphics and Modelling. 18: 555. DOI: 10.1016/S1093-3263(00)80130-8 | 0.719 | |||
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