Year |
Citation |
Score |
2012 |
Schramm CA, Hannigan BT, Donald JE, Keasar C, Saven JG, Degrado WF, Samish I. Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions. Structure (London, England : 1993). 20: 924-35. PMID 22579257 DOI: 10.1016/J.Str.2012.03.016 |
0.482 |
|
2011 |
Kim YH, Donald JE, Grigoryan G, Leser GP, Fadeev AY, Lamb RA, DeGrado WF. Capture and imaging of a prehairpin fusion intermediate of the paramyxovirus PIV5. Proceedings of the National Academy of Sciences of the United States of America. 108: 20992-7. PMID 22178759 DOI: 10.1073/Pnas.1116034108 |
0.432 |
|
2011 |
Donald JE, Zhang Y, Fiorin G, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Transmembrane orientation and possible role of the fusogenic peptide from parainfluenza virus 5 (PIV5) in promoting fusion. Proceedings of the National Academy of Sciences of the United States of America. 108: 3958-63. PMID 21321234 DOI: 10.1073/Pnas.1019668108 |
0.419 |
|
2011 |
Donald JE, Kulp DW, DeGrado WF. Salt bridges: geometrically specific, designable interactions. Proteins. 79: 898-915. PMID 21287621 DOI: 10.1002/Prot.22927 |
0.533 |
|
2011 |
Fiorin G, Donald JE, Zhang Y, Carnevale V, Slochower DR, Gai F, Klein ML, DeGrado WF. Association of Transmembrane Helices in Viral Fusion Peptides Suggests a Protein-Centric Mechanism of Membrane Fusion Biophysical Journal. 100: 633a. DOI: 10.1016/J.Bpj.2010.12.3637 |
0.454 |
|
2010 |
Donald JE, Zhu H, Litvinov RI, DeGrado WF, Bennett JS. Identification of interacting hot spots in the beta3 integrin stalk using comprehensive interface design. The Journal of Biological Chemistry. 285: 38658-65. PMID 20929856 DOI: 10.1074/Jbc.M110.170670 |
0.389 |
|
2009 |
Bissonnette ML, Donald JE, DeGrado WF, Jardetzky TS, Lamb RA. Functional analysis of the transmembrane domain in paramyxovirus F protein-mediated membrane fusion. Journal of Molecular Biology. 386: 14-36. PMID 19121325 DOI: 10.1016/J.Jmb.2008.12.029 |
0.424 |
|
2009 |
Donald JE, Shakhnovich EI. SDR: a database of predicted specificity-determining residues in proteins. Nucleic Acids Research. 37: D191-4. PMID 18927118 DOI: 10.1093/Nar/Gkn716 |
0.692 |
|
2009 |
Donald JE, Zhu H, DeGrado WF, Bennett JS. Identification of Stalk Mutations That Stabilize the High Affinity Conformation of αIIbβ3 by Negative Design. Blood. 114: 4017-4017. DOI: 10.1182/Blood.V114.22.4017.4017 |
0.394 |
|
2007 |
Donald JE, Chen WW, Shakhnovich EI. Energetics of protein-DNA interactions. Nucleic Acids Research. 35: 1039-47. PMID 17259221 DOI: 10.1093/Nar/Gkl1103 |
0.602 |
|
2005 |
Donald JE, Shakhnovich EI. Predicting specificity-determining residues in two large eukaryotic transcription factor families. Nucleic Acids Research. 33: 4455-65. PMID 16085755 DOI: 10.1093/Nar/Gki755 |
0.669 |
|
2005 |
Donald JE, Shakhnovich EI. Determining functional specificity from protein sequences. Bioinformatics (Oxford, England). 21: 2629-35. PMID 15797914 DOI: 10.1093/Bioinformatics/Bti396 |
0.644 |
|
2005 |
Donald JE, Hubner IA, Rotemberg VM, Shakhnovich EI, Mirny LA. CoC: a database of universally conserved residues in protein folds. Bioinformatics (Oxford, England). 21: 2539-40. PMID 15746286 DOI: 10.1093/Bioinformatics/Bti360 |
0.485 |
|
Show low-probability matches. |