ZhaoLei Zhang, Ph.D. - Publications

Affiliations: 
2000 University of California, Berkeley, Berkeley, CA 
Area:
Structural biology

39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Kim T, Moon JH, Ahn JS, Kim YK, Lee SS, Ahn SY, Jung SH, Yang DH, Lee JJ, Choi SH, Lee JY, Tyndel MS, Shin MG, Lee YJ, Sohn SK, ... ... Zhang Z, et al. Next-generation sequencing based post-transplant monitoring of acute myeloid leukemia. Blood. PMID 30108064 DOI: 10.1182/blood-2018-04-848028  0.8
2018 Ahn JS, Kim HJ, Kim YK, Lee SS, Ahn SY, Jung SH, Yang DH, Lee JJ, Park HJ, Lee JY, Choi SH, Jung CW, Jang JH, Kim HJ, Moon JH, ... ... Zhang Z, et al. Assessment of a new genomic classification system in acute myeloid leukemia with a normal karyotype. Oncotarget. 9: 4961-4968. PMID 29435155 DOI: 10.18632/oncotarget.23575  0.8
2017 Kim T, Tyndel MS, Zhang Z, Ahn J, Choi S, Szardenings M, Lipton JH, Kim HJ, Kim Dong Hwan D. Exome sequencing reveals DNMT3A and ASXL1 variants associate with progression of chronic myeloid leukemia after tyrosine kinase inhibitor therapy. Leukemia Research. 59: 142-148. PMID 28667884 DOI: 10.1016/j.leukres.2017.06.009  0.8
2016 Kim T, Tyndel MS, Kim HJ, Ahn JS, Choi SH, Park HJ, Kim YK, Kim SY, Lipton JH, Zhang Z, Kim DD. Spectrum of somatic mutation dynamics in chronic myeloid leukemia following tyrosine kinase inhibitor therapy. Blood. PMID 27733357 DOI: 10.1182/blood-2016-04-708560  0.8
2016 Styles EB, Founk KJ, Zamparo LA, Sing TL, Altintas D, Ribeyre C, Ribaud V, Rougemont J, Mayhew D, Costanzo M, Usaj M, Verster AJ, Koch EN, Novarina D, Graf M, ... ... Zhang Z, et al. Exploring Quantitative Yeast Phenomics with Single-Cell Analysis of DNA Damage Foci. Cell Systems. PMID 27617677 DOI: 10.1016/j.cels.2016.08.008  0.6
2016 Olsen JB, Wong L, Deimling S, Miles A, Guo H, Li Y, Zhang Z, Greenblatt JF, Emili A, Tropepe V. G9a and ZNF644 Physically Associate to Suppress Progenitor Gene Expression during Neurogenesis. Stem Cell Reports. PMID 27546533 DOI: 10.1016/j.stemcr.2016.06.012  0.6
2016 Yimit A, Kim T, Anand R, Meister S, Ou J, Haber JE, Zhang Z, Brown GW. MTE1 Functions with MPH1 in Double-Strand Break Repair. Genetics. PMID 26920759 DOI: 10.1534/genetics.115.185454  0.6
2016 Gu Z, Jin K, Crabbe MJ, Zhang Y, Liu X, Huang Y, Hua M, Nan P, Zhang Z, Zhong Y. Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome. Protein & Cell. PMID 26861146 DOI: 10.1007/s13238-015-0240-7  0.6
2015 Dibitetto D, Ferrari M, Rawal CC, Balint A, Kim T, Zhang Z, Smolka MB, Brown GW, Marini F, Pellicioli A. Slx4 and Rtt107 control checkpoint signalling and DNA resection at double-strand breaks. Nucleic Acids Research. PMID 26490958 DOI: 10.1093/nar/gkv1080  0.6
2015 Jessulat M, Malty RH, Nguyen-Tran DH, Deineko V, Aoki H, Vlasblom J, Omidi K, Jin K, Minic Z, Hooshyar M, Burnside D, Samanfar B, Phanse S, Freywald T, Prasad B, ... Zhang Z, et al. Spindle Checkpoint Factors Bub1 and Bub2 Promote DNA Double-Strand Break Repair by Nonhomologous End Joining. Molecular and Cellular Biology. 35: 2448-63. PMID 25963654 DOI: 10.1128/MCB.00007-15  0.6
2015 Yang L, Zhang Z, He S. Bichir microRNA repertoire suggests a ray-finned fish affinity of Polypteriforme. Gene. 566: 242-7. PMID 25917619 DOI: 10.1016/j.gene.2015.04.058  0.6
2015 Jin K, Musso G, Vlasblom J, Jessulat M, Deineko V, Negroni J, Mosca R, Malty R, Nguyen-Tran DH, Aoki H, Minic Z, Freywald T, Phanse S, Xiang Q, Freywald A, ... ... Zhang Z, et al. Yeast mitochondrial protein-protein interactions reveal diverse complexes and disease-relevant functional relationships. Journal of Proteome Research. 14: 1220-37. PMID 25546499 DOI: 10.1021/pr501148q  0.6
2015 Yang L, Wang Y, Zhang Z, He S. Comprehensive transcriptome analysis reveals accelerated genic evolution in a Tibet fish, Gymnodiptychus pachycheilus. Genome Biology and Evolution. 7: 251-61. PMID 25543049 DOI: 10.1093/gbe/evu279  0.6
2014 Cromar G, Wong KC, Loughran N, On T, Song H, Xiong X, Zhang Z, Parkinson J. New tricks for "old" domains: how novel architectures and promiscuous hubs contributed to the organization and evolution of the ECM. Genome Biology and Evolution. 6: 2897-917. PMID 25323955 DOI: 10.1093/gbe/evu228  0.6
2014 Li Y, Liang C, Easterbrook S, Luo J, Zhang Z. Investigating the functional implications of reinforcing feedback loops in transcriptional regulatory networks. Molecular Biosystems. 10: 3238-48. PMID 25286350 DOI: 10.1039/c4mb00526k  0.6
2014 Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z. Identifying mRNA sequence elements for target recognition by human Argonaute proteins. Genome Research. 24: 775-85. PMID 24663241 DOI: 10.1101/gr.162230.113  0.6
2014 Wong KC, Zhang Z. SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences. Bioinformatics (Oxford, England). PMID 24389653 DOI: 10.1093/bioinformatics/btt769  0.6
2013 Choi H, Jung C, Sohn SK, Kim S, Kim HJ, Kim YK, Kim T, Zhang Z, Shin ES, Lee JE, Moon JH, Kim SH, Kim KH, Mun YC, Kim H, et al. Genome-wide genotype-based risk model for survival in acute myeloid leukaemia patients with normal karyotype. British Journal of Haematology. 163: 62-71. PMID 24159609 DOI: 10.1111/bjh.12492  0.6
2013 Snider J, Hanif A, Lee ME, Jin K, Yu AR, Graham C, Chuk M, Damjanovic D, Wierzbicka M, Tang P, Balderes D, Wong V, Jessulat M, Darowski KD, San Luis BJ, ... ... Zhang Z, et al. Mapping the functional yeast ABC transporter interactome. Nature Chemical Biology. 9: 565-72. PMID 23831759 DOI: 10.1038/nchembio.1293  0.6
2013 Li Y, Zhao DY, Greenblatt JF, Zhang Z. RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments. Nucleic Acids Research. 41: e94. PMID 23455476 DOI: 10.1093/nar/gkt142  0.6
2012 Li J, Liu Y, Xin X, Kim TS, Cabeza EA, Ren J, Nielsen R, Wrana JL, Zhang Z. Evidence for positive selection on a number of MicroRNA regulatory interactions during recent human evolution. Plos Genetics. 8: e1002578. PMID 22457636 DOI: 10.1371/journal.pgen.1002578  0.6
2012 Jin K, Li J, Vizeacoumar FS, Li Z, Min R, Zamparo L, Vizeacoumar FJ, Datti A, Andrews B, Boone C, Zhang Z. PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae. Nucleic Acids Research. 40: D687-94. PMID 22009677 DOI: 10.1093/nar/gkr827  0.6
2011 Gong Y, Zhang Z, Houry WA. Bioinformatic approach to identify chaperone pathway relationship from large-scale interaction networks. Methods in Molecular Biology (Clifton, N.J.). 787: 189-203. PMID 21898237 DOI: 10.1007/978-1-61779-295-3_15  0.6
2011 Li Z, Vizeacoumar FJ, Bahr S, Li J, Warringer J, Vizeacoumar FS, Min R, Vandersluis B, Bellay J, Devit M, Fleming JA, Stephens A, Haase J, Lin ZY, Baryshnikova A, ... ... Zhang Z, et al. Systematic exploration of essential yeast gene function with temperature-sensitive mutants. Nature Biotechnology. 29: 361-7. PMID 21441928 DOI: 10.1038/nbt.1832  0.6
2011 Turinsky AL, Turner B, Borja RC, Gleeson JA, Heath M, Pu S, Switzer T, Dong D, Gong Y, On T, Xiong X, Emili A, Greenblatt J, Parkinson J, Zhang Z, et al. DAnCER: disease-annotated chromatin epigenetics resource. Nucleic Acids Research. 39: D889-94. PMID 20876685 DOI: 10.1093/nar/gkq857  0.6
2010 Pu S, Turinsky AL, Vlasblom J, On T, Xiong X, Emili A, Zhang Z, Greenblatt J, Parkinson J, Wodak SJ. Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human. Plos One. 5: e14122. PMID 21124763 DOI: 10.1371/journal.pone.0014122  0.6
2010 Li J, Liu Y, Kim T, Min R, Zhang Z. Gene expression variability within and between human populations and implications toward disease susceptibility. Plos Computational Biology. 6. PMID 20865155 DOI: 10.1371/journal.pcbi.1000910  0.6
2010 On T, Xiong X, Pu S, Turinsky A, Gong Y, Emili A, Zhang Z, Greenblatt J, Wodak SJ, Parkinson J. The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins. 78: 2075-89. PMID 20455264 DOI: 10.1002/prot.22723  0.6
2010 Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, et al. Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis. The Journal of Cell Biology. 188: 69-81. PMID 20065090 DOI: 10.1083/jcb.200909013  0.6
2009 Guo X, Zhang Z, Gerstein MB, Zheng D. Small RNAs originated from pseudogenes: cis- or trans-acting? Plos Computational Biology. 5: e1000449. PMID 19649160 DOI: 10.1371/journal.pcbi.1000449  0.6
2009 Gong Y, Kakihara Y, Krogan N, Greenblatt J, Emili A, Zhang Z, Houry WA. An atlas of chaperone-protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell. Molecular Systems Biology. 5: 275. PMID 19536198 DOI: 10.1038/msb.2009.26  0.6
2009 Min R, Bonner A, Li J, Zhang Z. Learned random-walk kernels and empirical-map kernels for protein sequence classification. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 457-74. PMID 19254184 DOI: 10.1089/cmb.2008.0031  0.6
2008 Musso G, Costanzo M, Huangfu M, Smith AM, Paw J, San Luis BJ, Boone C, Giaever G, Nislow C, Emili A, Zhang Z. The extensive and condition-dependent nature of epistasis among whole-genome duplicates in yeast. Genome Research. 18: 1092-9. PMID 18463300 DOI: 10.1101/gr.076174.108  0.6
2007 Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M. Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research. 35: D55-60. PMID 17099229 DOI: 10.1093/nar/gkl851  0.6
2003 Harrison PM, Milburn D, Zhang Z, Bertone P, Gerstein M. Identification of pseudogenes in the Drosophila melanogaster genome. Nucleic Acids Research. 31: 1033-7. PMID 12560500 DOI: 10.1093/nar/gkg169  0.6
2002 Luscombe NM, Qian J, Zhang Z, Johnson T, Gerstein M. The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties. Genome Biology. 3: RESEARCH0040. PMID 12186647  0.6
2002 Balasubramanian S, Harrison P, Hegyi H, Bertone P, Luscombe N, Echols N, McGarvey P, Zhang Z, Gerstein M. SNPs on human chromosomes 21 and 22 -- analysis in terms of protein features and pseudogenes. Pharmacogenomics. 3: 393-402. PMID 12052146 DOI: 10.1517/14622416.3.3.393  0.6
2002 Echols N, Harrison P, Balasubramanian S, Luscombe NM, Bertone P, Zhang Z, Gerstein M. Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes. Nucleic Acids Research. 30: 2515-23. PMID 12034841  0.6
2002 Liu Y, Luscombe NM, Alexandrov V, Bertone P, Harrison P, Zhang Z, Gerstein M. Structural genomics: a new era for pharmaceutical research. Genome Biology. 3: REPORTS4004. PMID 11864367  0.6
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