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Gregory E. Sims, Ph.D. - Publications

Affiliations: 
2005 University of California, Berkeley, Berkeley, CA, United States 
Area:
Structural biology
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9 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2011 Sims GE, Kim SH. Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs). Proceedings of the National Academy of Sciences of the United States of America. 108: 8329-34. PMID 21536867 DOI: 10.1073/Pnas.1105168108  0.511
2010 Jun SR, Sims GE, Wu GA, Kim SH. Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution. Proceedings of the National Academy of Sciences of the United States of America. 107: 133-8. PMID 20018669 DOI: 10.1073/Pnas.0913033107  0.56
2009 Sims GE, Jun SR, Wu GA, Kim SH. Whole-genome phylogeny of mammals: evolutionary information in genic and nongenic regions. Proceedings of the National Academy of Sciences of the United States of America. 106: 17077-82. PMID 19805074 DOI: 10.1073/Pnas.0909377106  0.543
2009 Wu GA, Jun SR, Sims GE, Kim SH. Whole-proteome phylogeny of large dsDNA virus families by an alignment-free method. Proceedings of the National Academy of Sciences of the United States of America. 106: 12826-31. PMID 19553209 DOI: 10.1073/Pnas.0905115106  0.503
2009 Sims GE, Jun SR, Wu GA, Kim SH. Alignment-free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proceedings of the National Academy of Sciences of the United States of America. 106: 2677-82. PMID 19188606 DOI: 10.1073/Pnas.0813249106  0.565
2006 Sims GE, Kim SH. A method for evaluating the structural quality of protein models by using higher-order phi-psi pairs scoring. Proceedings of the National Academy of Sciences of the United States of America. 103: 4428-32. PMID 16537409 DOI: 10.1073/Pnas.0511333103  0.515
2005 Sims GE, Choi IG, Kim SH. Protein conformational space in higher order phi-Psi maps. Proceedings of the National Academy of Sciences of the United States of America. 102: 618-21. PMID 15640351 DOI: 10.1073/Pnas.0408746102  0.615
2003 Sims GE, Kim SH. Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes. Nucleic Acids Research. 31: 5607-16. PMID 14500824 DOI: 10.1093/Nar/Gkg750  0.597
2003 Hou J, Sims GE, Zhang C, Kim SH. A global representation of the protein fold space. Proceedings of the National Academy of Sciences of the United States of America. 100: 2386-90. PMID 12606708 DOI: 10.1073/Pnas.2628030100  0.639
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