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Nathan J. Baird, Ph.D. - Publications

Affiliations: 
2007 University of Chicago, Chicago, IL 
Area:
studies of protein and RNA folding, function and design
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Swain M, Ageeli AA, Kasprzak WK, Li M, Miller JT, Sztuba-Solinska J, Schneekloth JS, Koirala D, Piccirili J, Fraboni AJ, Murelli RP, Wlodawer A, Shapiro BA, Baird N, Le Grice SFJ. Dynamic bulge nucleotides in the KSHV PAN ENE triple helix provide a unique binding platform for small molecule ligands. Nucleic Acids Research. PMID 34871450 DOI: 10.1093/nar/gkab1170  0.398
2019 McGovern-Gooch KR, Baird NJ. Fluorescence-based investigations of RNA-small molecule interactions. Methods (San Diego, Calif.). PMID 31129289 DOI: 10.1016/j.ymeth.2019.05.017  0.423
2019 Yonkunas MJ, Baird NJ. A highly ordered, non-protective MALAT1 ENE structure is adopted prior to triplex formation. Rna (New York, N.Y.). PMID 31113838 DOI: 10.1261/Rna.069906.118  0.399
2019 Abulwerdi FA, Xu W, Ageeli AA, Yonkunas MJ, Arun G, Nam H, Schneekloth JS, Dayie TK, Spector D, Baird N, Le Grice SFJ. Selective small molecule targeting of a triple helix encoded by the long non-coding RNA, MALAT1. Acs Chemical Biology. PMID 30620551 DOI: 10.1021/Acschembio.8B00807  0.35
2018 Ageeli AA, McGovern-Gooch KR, Kaminska MM, Baird NJ. Finely tuned conformational dynamics regulate the protective function of the lncRNA MALAT1 triple helix. Nucleic Acids Research. PMID 30462290 DOI: 10.1093/nar/gky1171  0.354
2018 Yonkunas M, Baird N. Enhanced Sampling of LNCRNA Conformational Space for Defining Ensembles of Structures Used in Ensemble Docking and Virtual Screening of RNA-Focused Small Molecules Biophysical Journal. 114: 435a. DOI: 10.1016/J.Bpj.2017.11.2409  0.432
2017 Yu H, Dranchak P, Li Z, MacArthur R, Munson MS, Mehzabeen N, Baird NJ, Battalie KP, Ross D, Lovell S, Carlow CK, Suga H, Inglese J. Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases. Nature Communications. 8: 14932. PMID 28368002 DOI: 10.1038/Ncomms14932  0.349
2015 Baird NJ, Inglese J, Ferré-D'Amaré AR. Rapid RNA-ligand interaction analysis through high-information content conformational and stability landscapes. Nature Communications. 6: 8898. PMID 26638992 DOI: 10.1038/Ncomms9898  0.606
2014 Baird NJ, Ferré-D'Amaré AR. Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS). Methods in Molecular Biology (Clifton, N.J.). 1103: 211-25. PMID 24318897 DOI: 10.1007/978-1-62703-730-3_16  0.483
2013 Baird NJ, Ferré-D'Amaré AR. Modulation of quaternary structure and enhancement of ligand binding by the K-turn of tandem glycine riboswitches. Rna (New York, N.Y.). 19: 167-76. PMID 23249744 DOI: 10.1261/Rna.036269.112  0.556
2012 Baird NJ, Zhang J, Hamma T, Ferré-D'Amaré AR. YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops. Rna (New York, N.Y.). 18: 759-70. PMID 22355167 DOI: 10.1261/Rna.031518.111  0.44
2010 Baird NJ, Ludtke SJ, Khant H, Chiu W, Pan T, Sosnick TR. Discrete structure of an RNA folding intermediate revealed by cryo-electron microscopy. Journal of the American Chemical Society. 132: 16352-3. PMID 21038867 DOI: 10.1021/Ja107492B  0.689
2010 Baird NJ, Kulshina N, Ferré-D'Amaré AR. Riboswitch function: flipping the switch or tuning the dimmer? Rna Biology. 7: 328-32. PMID 20458165 DOI: 10.4161/Rna.7.3.11932  0.504
2010 Baird NJ, Gong H, Zaheer SS, Freed KF, Pan T, Sosnick TR. Extended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion. Journal of Molecular Biology. 397: 1298-306. PMID 20188108 DOI: 10.1016/J.Jmb.2010.02.025  0.636
2010 Baird NJ, Ferré-D'Amaré AR. Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis. Rna (New York, N.Y.). 16: 598-609. PMID 20106958 DOI: 10.1261/Rna.1852310  0.528
2010 Baird NJ, Ferré-D'Amaré AR. Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis (RNA (2010) 16, (598-609)) Rna. 16: 1447.  0.408
2009 Kulshina N, Baird NJ, Ferré-D'Amaré AR. Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch. Nature Structural & Molecular Biology. 16: 1212-7. PMID 19898478 DOI: 10.1038/Nsmb.1701  0.543
2007 Baird NJ, Fang XW, Srividya N, Pan T, Sosnick TR. Folding of a universal ribozyme: the ribonuclease P RNA. Quarterly Reviews of Biophysics. 40: 113-61. PMID 17931443 DOI: 10.1017/S0033583507004623  0.673
2006 Baird NJ, Srividya N, Krasilnikov AS, Mondragón A, Sosnick TR, Pan T. Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium. Rna (New York, N.Y.). 12: 598-606. PMID 16581805 DOI: 10.1261/Rna.2186506  0.656
2005 Baird NJ, Westhof E, Qin H, Pan T, Sosnick TR. Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding. Journal of Molecular Biology. 352: 712-22. PMID 16115647 DOI: 10.1016/J.Jmb.2005.07.010  0.704
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