Darcy S. Peterka, Ph.D. - Publications

2005 University of California, Berkeley, Berkeley, CA 
molecular structure and dynamics

46/65 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Karaveli S, Gaathon O, Wolcott A, Sakakibara R, Shemesh OA, Peterka DS, Boyden ES, Owen JS, Yuste R, Englund D. Modulation of nitrogen vacancy charge state and fluorescence in nanodiamonds using electrochemical potential. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035935 DOI: 10.1073/pnas.1504451113  0.64
2016 Quirin S, Vladimirov N, Yang CT, Peterka DS, Yuste R, B Ahrens M. Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy. Optics Letters. 41: 855-858. PMID 26974063 DOI: 10.1364/OL.41.000855  0.64
2016 Pnevmatikakis EA, Soudry D, Gao Y, Machado TA, Merel J, Pfau D, Reardon T, Mu Y, Lacefield C, Yang W, Ahrens M, Bruno R, Jessell TM, Peterka DS, Yuste R, et al. Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data. Neuron. PMID 26774160 DOI: 10.1016/j.neuron.2015.11.037  0.64
2016 Yang W, Miller JK, Carrillo-Reid L, Pnevmatikakis E, Paninski L, Yuste R, Peterka DS. Simultaneous Multi-plane Imaging of Neural Circuits. Neuron. PMID 26774159 DOI: 10.1016/j.neuron.2015.12.012  0.64
2015 Karaveli S, Gaathon O, Wolcott A, Sakakibara R, Peterka DS, Owen JS, Yuste R, Englund D. Electrochemical potential control of charge state and fluorescence of nitrogen vacancy centers in nanodiamonds Cleo: Qels - Fundamental Science, Cleo_qels 2015. 1551p. DOI: 10.1364/CLEO_QELS.2015.FTh3B.6  0.64
2015 Yang W, Miller JEK, Carrillo-Reid L, Yuste R, Peterka DS. Dual-region in vivo functional imaging with a spatial light modulator Optics and the Brain, Brain 2015 0.64
2014 Quirin S, Jackson J, Peterka DS, Yuste R. Simultaneous imaging of neural activity in three dimensions. Frontiers in Neural Circuits. 8: 29. PMID 24772066 DOI: 10.3389/fncir.2014.00029  0.64
2014 Linnenberger A, Peterka DS, Quirin S, Yuste R. The Pocketscope: A spatial light modulator based epi-fluorescence microscope for optogenetics Proceedings of Spie - the International Society For Optical Engineering. 9164. DOI: 10.1117/12.2064304  0.64
2013 Nikolenko V, Peterka DS, Araya R, Woodruff A, Yuste R. Spatial light modulator microscopy. Cold Spring Harbor Protocols. 2013: 1132-41. PMID 24298039 DOI: 10.1101/pdb.top079517  0.64
2013 Quirin S, Peterka DS, Yuste R. Instantaneous three-dimensional sensing using spatial light modulator illumination with extended depth of field imaging. Optics Express. 21: 16007-21. PMID 23842387 DOI: 10.1364/OE.21.016007  0.64
2012 Prakash R, Yizhar O, Grewe B, Ramakrishnan C, Wang N, Goshen I, Packer AM, Peterka DS, Yuste R, Schnitzer MJ, Deisseroth K. Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation. Nature Methods. 9: 1171-9. PMID 23169303 DOI: 10.1038/nmeth.2215  0.64
2012 Packer AM, Peterka DS, Hirtz JJ, Prakash R, Deisseroth K, Yuste R. Two-photon optogenetics of dendritic spines and neural circuits. Nature Methods. 9: 1202-5. PMID 23142873 DOI: 10.1038/nmeth.2249  0.64
2012 Yang X, Rode DL, Peterka DS, Yuste R, Rothman SM. Optical control of focal epilepsy in vivo with caged γ-aminobutyric acid. Annals of Neurology. 71: 68-75. PMID 22275253 DOI: 10.1002/ana.22596  0.64
2011 Peterka DS, Takahashi H, Yuste R. Imaging voltage in neurons. Neuron. 69: 9-21. PMID 21220095 DOI: 10.1016/j.neuron.2010.12.010  0.64
2010 Watson BO, Nikolenko V, Araya R, Peterka DS, Woodruff A, Yuste R. Two-photon microscopy with diffractive optical elements and spatial light modulators. Frontiers in Neuroscience. 4. PMID 20859526 DOI: 10.3389/fnins.2010.00029  0.64
2010 Nikolenko V, Peterka DS, Yuste R. A portable laser photostimulation and imaging microscope. Journal of Neural Engineering. 7: 045001. PMID 20644244 DOI: 10.1088/1741-2560/7/4/045001  0.64
2010 Gallagher SS, Jing C, Peterka DS, Konate M, Wombacher R, Kaufman LJ, Yuste R, Cornish VW. A trimethoprim-based chemical tag for live cell two-photon imaging. Chembiochem : a European Journal of Chemical Biology. 11: 782-4. PMID 20217883 DOI: 10.1002/cbic.200900731  0.64
2010 Salierno M, Marceca E, Peterka DS, Yuste R, Etchenique R. A fast ruthenium polypyridine cage complex photoreleases glutamate with visible or IR light in one and two photon regimes. Journal of Inorganic Biochemistry. 104: 418-22. PMID 20060592 DOI: 10.1016/j.jinorgbio.2009.12.004  0.64
2010 Peterka DS, Nikolenko V, Fino E, Araya R, Etchenique R, Yuste R. Fast two-photon neuronal imaging and control using a spatial light modulator and ruthenium compounds Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7548. DOI: 10.1117/12.842606  0.64
2009 Fino E, Araya R, Peterka DS, Salierno M, Etchenique R, Yuste R. RuBi-Glutamate: Two-Photon and Visible-Light Photoactivation of Neurons and Dendritic spines. Frontiers in Neural Circuits. 3: 2. PMID 19506708 DOI: 10.3389/neuro.04.002.2009  0.64
2008 Nikolenko V, Watson BO, Araya R, Woodruff A, Peterka DS, Yuste R. SLM Microscopy: Scanless Two-Photon Imaging and Photostimulation with Spatial Light Modulators. Frontiers in Neural Circuits. 2: 5. PMID 19129923 DOI: 10.3389/neuro.04.005.2008  0.64
2008 Osborn DL, Zou P, Johnsen H, Hayden CC, Taatjes CA, Knyazev VD, North SW, Peterka DS, Ahmed M, Leone SR. The multiplexed chemical kinetic photoionization mass spectrometer: a new approach to isomer-resolved chemical kinetics. The Review of Scientific Instruments. 79: 104103. PMID 19044733 DOI: 10.1063/1.3000004  0.64
2008 Wang CC, Kornilov O, Gessner O, Kim JH, Peterka DS, Neumark DM. Photoelectron imaging of helium droplets doped with Xe and Kr atoms. The Journal of Physical Chemistry. A. 112: 9356-65. PMID 18690675 DOI: 10.1021/jp802332f  0.64
2007 Peterka DS, Kim JH, Wang CC, Poisson L, Neumark DM. Photoionization dynamics in pure helium droplets. The Journal of Physical Chemistry. A. 111: 7449-59. PMID 17571863 DOI: 10.1021/jp0710032  0.64
2006 Peterka DS, Kim JH, Wang CC, Neumark DM. Photoionization and photofragmentation of SF6 in helium nanodroplets. The Journal of Physical Chemistry. B. 110: 19945-55. PMID 17020381 DOI: 10.1021/jp062195o  0.64
2006 Kim JH, Peterka DS, Wang CC, Neumark DM. Photoionization of helium nanodroplets doped with rare gas atoms. The Journal of Chemical Physics. 124: 214301. PMID 16774401 DOI: 10.1063/1.2202313  0.64
2006 Wilson KR, Peterka DS, Jimenez-Cruz M, Leone SR, Ahmed M. VUV photoelectron imaging of biological nanoparticles: ionization energy determination of nanophase glycine and phenylalanine-glycine-glycine. Physical Chemistry Chemical Physics : Pccp. 8: 1884-90. PMID 16633674 DOI: 10.1039/b517487b  0.64
2006 Zhang T, Tang XN, Lau KC, Ng CY, Nicolas C, Peterka DS, Ahmed M, Morton ML, Ruscic B, Yang R, Wei LX, Huang CQ, Yang B, Wang J, Sheng LS, et al. Direct identification of propargyl radical in combustion flames by vacuum ultraviolet photoionization mass spectrometry. The Journal of Chemical Physics. 124: 74302. PMID 16497031 DOI: 10.1063/1.2168448  0.64
2006 Nicolas C, Shu J, Peterka DS, Hochlaf M, Poisson L, Leone SR, Ahmed M. Vacuum ultraviolet photoionization of C3. Journal of the American Chemical Society. 128: 220-6. PMID 16390150 DOI: 10.1021/ja055430+  0.44
2005 Cool TA, McIlroy A, Qi F, Westmoreland PR, Poisson L, Peterka DS, Ahmed M. Photoionization mass spectrometer for studies of flame chemistry with a synchrotron light source Review of Scientific Instruments. 76. DOI: 10.1063/1.2010307  0.44
2005 Westmoreland PR, Law ME, Gon S, Cool TA, Wang J, McIlroy A, Taatjes CA, Hansen N, Qi F, Kasper T, Kohse-Höinghaus K, Ahmed M, Peterka DS, Poisson L. Recent advances in flame-sampling molecular-beam mass spectrometry Chemical and Physical Processes of Combustion - 2005 Technical Meeting of the Eastern States Section of the Combustion Institute. 205-212.  0.64
2003 Peterka DS, Lindinger A, Poisson L, Ahmed M, Neumark DM. Photoelectron imaging of helium droplets. Physical Review Letters. 91: 043401. PMID 12906657 DOI: 10.1103/PhysRevLett.91.043401  0.64
2003 Cool TA, Nakajima K, Mostefaoui TA, Qi F, Mcllroy A, Westmoreland PR, Law ME, Poisson L, Peterka DS, Ahmed M. Selective detection of isomers with photoionization mass spectrometry for studies of hydrocarbon flame chemistry Journal of Chemical Physics. 119: 8356-8365. DOI: 10.1063/1.1611173  0.44
2003 Li W, Poisson L, Peterka DS, Ahmed M, Lucchese RR, Suits AG. Dissociative photoionization dynamics in ethane studied by velocity map imaging Chemical Physics Letters. 374: 334-340. DOI: 10.1016/S0009-2614(03)00712-7  0.64
2001 Ahmed M, Peterka DS, Regan P, Liu X, Suits AG. Ion pair imaging spectroscopy: CH3Cl→CH3 ++Cl- Chemical Physics Letters. 339: 203-208. DOI: 10.1016/S0009-2614(01)00252-4  0.64
2001 Wouters ER, Ahmed M, Peterka DS, Bracker AS, Suits AG, Vasyutinskii OS. Imaging the atomic orientation and alignment in photodissociation Acs Symposium Series. 770: 238-284.  0.64
2001 Ahmed M, Peterka DS, Suits AG. New directions in reaction dynamics using velocity map imaging Acs Symposium Series. 770: 167-195.  0.64
2000 Ahmed M, Peterka DS, Suits AG. Imaging H abstraction dynamics in crossed molecular beams: Cl + ROH reactions Physical Chemistry Chemical Physics. 2: 861-868. DOI: 10.1039/a907877k  0.64
2000 Ahmed M, Peterka DS, Suits AG. H abstraction dynamics by crossed-beam velocity map imaging: Cl+CH3OH → CH2OH+HCl Chemical Physics Letters. 317: 264-268.  0.64
1999 Ahmed M, Wouters ER, Peterka DS, Vasyutinskii OS, Suits AG. Atomic orbital alignment and coherence in N2O photodissociation at 193.3 nm Faraday Discussions. 113: 425-436.  0.64
1999 Peterka DS, Ahmed M, Ng CY, Suits AG. Dissociative photoionization dynamics of SF6 by ion imaging with synchrotron undulator radiation Chemical Physics Letters. 312: 108-114.  0.64
1999 Ahmed M, Peterka DS, Bracker AS, Vasyutinskii OS, Suits AG. Coherence in polyatomic photodissociation: Aligned O(3P) from photodissociation of NO2 at 212.8 nm Journal of Chemical Physics. 110: 4115-4118.  0.64
1999 Ahmed M, Peterka DS, Suits AG. The photodissociation of the vinyl radical (C2H3) at 243 nm studied by velocity map imaging Journal of Chemical Physics. 110: 4248-4253.  0.64
1999 Ahmed M, Peterka DS, Suits AG. Crossed-beam reaction of O( 1D )+D2→OD+D by velocity map imaging Chemical Physics Letters. 301: 372-378.  0.64
1998 Jackson WM, Price RJ, Xu DD, Wrobel JD, Ahmed M, Peterka DS, Suits AG. Velocity map imaging studies of the Lyman α photodissociation mechanism for H atom production from hydrocarbons Journal of Chemical Physics. 109: 4703-4706. DOI: 10.1063/1.477082  0.64
1997 Bevsek HM, Ahmed M, Peterka DS, Sailes FC, Suits AG. Direct detection and spectroscopy of O4* Faraday Discussions. 108: 131-138.  0.64
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2004 Davis HF, Shu J, Peterka DS, Ahmed M. Crossed beams study of the reaction 1CH2+C2H2-->C3H3+H. The Journal of Chemical Physics. 121: 6254-7. PMID 15446918 DOI: 10.1063/1.1785152  0.2
2004 Shu J, Peterka DS, Leone SR, Ahmed M. Tunable synchrotron vacuum ultraviolet ionization, time-of-flight investigation of the photodissociation of trans-crotonaldehyde at 193 nm Journal of Physical Chemistry A. 108: 7895-7902. DOI: 10.1021/jp049638d  0.2
2002 Qi F, Sheng L, Ahmed M, Peterka DS, Baer T. Exclusive production of excited-state sulfur (1D) atoms from 193 nm photolysis of thietane Chemical Physics Letters. 357: 204-208. DOI: 10.1016/S0009-2614(02)00492-X  0.2
1999 Peterka DS. Unraveling the mysteries of metastable O4 Journal of Chemical Physics. 110: 6095-6098.  0.08
2019 Wenzel M, Hamm JP, Peterka DS, Yuste R. Acute focal seizures start as local synchronizations of neuronal ensembles. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 31427393 DOI: 10.1523/JNEUROSCI.3176-18.2019  0.01
2018 Yang W, Carrillo-Reid L, Bando Y, Peterka DS, Yuste R. Simultaneous two-photon optogenetics and imaging of cortical circuits in three dimensions. Elife. 7. PMID 29412138 DOI: 10.7554/eLife.32671  0.01
2017 Friedrich J, Yang W, Soudry D, Mu Y, Ahrens MB, Yuste R, Peterka DS, Paninski L. Multi-scale approaches for high-speed imaging and analysis of large neural populations. Plos Computational Biology. 13: e1005685. PMID 28771570 DOI: 10.1371/journal.pcbi.1005685  0.01
2017 Kwon T, Sakamoto M, Peterka DS, Yuste R. Attenuation of Synaptic Potentials in Dendritic Spines. Cell Reports. 20: 1100-1110. PMID 28768195 DOI: 10.1016/j.celrep.2017.07.012  0.01
2017 Wenzel M, Hamm JP, Peterka DS, Yuste R. Reliable and Elastic Propagation of Cortical Seizures In Vivo. Cell Reports. 19: 2681-2693. PMID 28658617 DOI: 10.1016/j.celrep.2017.05.090  0.01
2017 Hamm JP, Peterka DS, Gogos JA, Yuste R. Altered Cortical Ensembles in Mouse Models of Schizophrenia. Neuron. 94: 153-167.e8. PMID 28384469 DOI: 10.1016/j.neuron.2017.03.019  0.01
2017 Carrillo-Reid L, Yang W, Kang Miller JE, Peterka DS, Yuste R. Imaging and Optically Manipulating Neuronal Ensembles. Annual Review of Biophysics. PMID 28301770 DOI: 10.1146/annurev-biophys-070816-033647  0.01
2016 Jayant K, Hirtz JJ, Plante IJ, Tsai DM, De Boer WD, Semonche A, Peterka DS, Owen JS, Sahin O, Shepard KL, Yuste R. Targeted intracellular voltage recordings from dendritic spines using quantum-dot-coated nanopipettes. Nature Nanotechnology. PMID 27941898 DOI: 10.1038/nnano.2016.268  0.01
2016 Carrillo-Reid L, Yang W, Bando Y, Peterka DS, Yuste R. Imprinting and recalling cortical ensembles. Science (New York, N.Y.). 353: 691-4. PMID 27516599 DOI: 10.1126/science.aaf7560  0.01
2013 Alivisatos AP, Andrews AM, Boyden ES, Chun M, Church GM, Deisseroth K, Donoghue JP, Fraser SE, Lippincott-Schwartz J, Looger LL, Masmanidis S, McEuen PL, Nurmikko AV, Park H, Peterka DS, et al. Nanotools for neuroscience and brain activity mapping. Acs Nano. 7: 1850-66. PMID 23514423 DOI: 10.1021/nn4012847  0.01
2005 Enders A, Repetto D, Peterka D, Kern K. Temperature dependence of the magnetism inFe∕Cu(001) Physical Review B. 72. DOI: 10.1103/PhysRevB.72.054446  0.01
2003 Enders A, Peterka D, Repetto D, Lin N, Dmitriev A, Kern K. Temperature dependence of the surface anisotropy of Fe ultrathin films on Cu(001). Physical Review Letters. 90: 217203. PMID 12786584 DOI: 10.1103/PhysRevLett.90.217203  0.01
2003 Qian XM, Zhang T, Chang C, Wang P, Ng CY, Chiu YH, Levandier DJ, Miller JS, Dressler RA, Baer T, Peterka DS. High-resolution state-selected ion-molecule reaction studies using pulsed field ionization photoelectron-secondary ion coincidence method Review of Scientific Instruments. 74: 4096-4109. DOI: 10.1063/1.1599071  0.01
2003 Peterka D, Enders A, Haas G, Kern K. Combined Kerr microscope and magnetic force microscope for variable temperature ultrahigh vacuum investigations Review of Scientific Instruments. 74: 2744-2748. DOI: 10.1063/1.1568556  0.01
1999 Peterka DS, Ahmed M, Suits AG, Wilson KJ, Korkin A, Nooijen M, Bartlett RJ. Erratum: “Unraveling the mysteries of metastable O4*” [J. Chem. Phys. 110, 6095 (1999)] The Journal of Chemical Physics. 111: 5279-5279. DOI: 10.1063/1.479742  0.01
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