Alexander A. Balaeff, Ph.D. - Publications

1994-2002 Biophysics University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
 2005-2012 Chemistry Duke University, Durham, NC 
 2012-2017 NanoScience Technology Center University of Central Florida, Orlando, FL, United States 
 2018- NewLeaf Symbiotics 
theoretical and computational biophysics/biochemistry/biology

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Sha R, Xiang L, Liu C, Balaeff A, Zhang Y, Zhang P, Li Y, Beratan DN, Tao N, Seeman NC. Charge splitters and charge transport junctions based on guanine quadruplexes. Nature Nanotechnology. PMID 29483600 DOI: 10.1038/s41565-018-0070-x  1
2016 Stancescu M, Fedotova TA, Hooyberghs J, Balaeff AA, Kolpashchikov DM. Non-Equilibrium Hybridization Enables Discrimination of a Point Mutation within 5-40oC. Journal of the American Chemical Society. PMID 27681667 DOI: 10.1021/jacs.6b05628  0.01
2016 Ignatova T, Balaeff A, Blades M, Zheng M, Stoeckl P, Rotkin SV. Two-color spectroscopy of UV excited ssDNA complex with a single-wall nanotube photoluminescence probe: Fast relaxation by nucleobase autoionization mechanism Nano Research. 1-13. DOI: 10.1007/s12274-015-0938-0  1
2015 Zhang Y, Zhang WB, Liu C, Zhang P, Balaeff A, Beratan DN. DNA charge transport: Moving beyond 1D Surface Science. DOI: 10.1016/j.susc.2016.03.011  1
2014 Zhang Y, Liu C, Balaeff A, Skourtis SS, Beratan DN. Biological charge transfer via flickering resonance. Proceedings of the National Academy of Sciences of the United States of America. 111: 10049-54. PMID 24965367 DOI: 10.1073/pnas.1316519111  1
2012 Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Reppireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. Journal of the American Chemical Society. 134: 9335-42. PMID 22548314 DOI: 10.1021/ja301677z  1
2011 Balaeff A, Craig SL, Beratan DN. B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristics. The Journal of Physical Chemistry. A. 115: 9377-91. PMID 21598926 DOI: 10.1021/jp110871g  1
2011 Venkatramani R, Keinan S, Balaeff A, Beratan DN. Nucleic Acid Charge Transfer: Black, White and Gray. Coordination Chemistry Reviews. 255: 635-648. PMID 21528017 DOI: 10.1016/j.ccr.2010.12.010  1
2011 Venkatramani R, Davis KL, Wierzbinski E, Bezer S, Balaeff A, Keinan S, Paul A, Kocsis L, Beratan DN, Achim C, Waldeck DH. Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid. Journal of the American Chemical Society. 133: 62-72. PMID 21141966 DOI: 10.1021/ja107622m  1
2011 Wolak MA, Balaeff A, Gutmann S, Helmrich HJ, Vosloo R, Beerbom MM, Wierzbinski E, Waldeck DH, Bezer S, Achim C, Beratan DN, Schlaf R. Electronic structure of self-assembled peptide nucleic acid thin films Journal of Physical Chemistry C. 115: 17123-17135. DOI: 10.1021/jp201602j  1
2010 Keinan S, Venkatramani R, Balaeff A, Beratan DN. Is MD geometry sampling sufficient for nucleobase electronic structure analysis of et reactions? Comparing classical MD and QM/MM methods Journal of Physical Chemistry C. 114: 20496-20502. DOI: 10.1021/jp104919g  1
2009 Beratan DN, Skourtis SS, Balabin IA, Balaeff A, Keinan S, Venkatramani R, Xiao D. Steering electrons on moving pathways. Accounts of Chemical Research. 42: 1669-78. PMID 19645446 DOI: 10.1021/ar900123t  1
2009 Paul A, Bezer S, Venkatramani R, Kocsis L, Wierzbinski E, Balaeff A, Keinan S, Beratan DN, Achim C, Waldeck DH. Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer. Journal of the American Chemical Society. 131: 6498-507. PMID 19382798 DOI: 10.1021/ja9000163  1
2008 He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C. Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations. Journal of the American Chemical Society. 130: 13264-73. PMID 18781753 DOI: 10.1021/ja800652h  1
2008 Hatcher E, Balaeff A, Keinan S, Venkatramani R, Beratan DN. PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms. Journal of the American Chemical Society. 130: 11752-61. PMID 18693722 DOI: 10.1021/ja802541e  1
2006 Balaeff A, Mahadevan L, Schulten K. Modeling DNA loops using the theory of elasticity Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 73. PMID 16605570 DOI: 10.1103/PhysRevE.73.031919  1
2005 Villa E, Balaeff A, Schulten K. Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation. Proceedings of the National Academy of Sciences of the United States of America. 102: 6783-8. PMID 15863616 DOI: 10.1073/pnas.0409387102  1
2004 Balaeff A, Koudella CR, Mahadevan L, Schulten K. Modelling DNA loops using continuum and statistical mechanics Philosophical Transactions of the Royal Society a: Mathematical, Physical and Engineering Sciences. 362: 1355-1371. PMID 15306455 DOI: 10.1098/rsta.2004.1384  1
2004 Balaeff A, Mahadevan L, Schulten K. Structural Basis for Cooperative DNA Binding by CAP and Lac Repressor Structure. 12: 123-132. PMID 14725772 DOI: 10.1016/j.str.2003.12.004  1
1999 Balaeff A, Mahadevan L, Schulten K. Elastic Rod Model of a DNA Loop in the Lac Operon Physical Review Letters. 83: 4900-4903.  1
1998 Balaeff A, Churchill MEA, Schulten K. Structure prediction of a complex between the chromosomal protein HMG-D and DNA Proteins: Structure, Function and Genetics. 30: 113-135. PMID 9489920 DOI: 10.1002/(SICI)1097-0134(19980201)30:2<113::AID-PROT2>3.0.CO;2-O  1
1994 Lysov YuP, Chernyi AA, Balaeff AA, Beattie KL, Mirzabekov AD. DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency. Journal of Biomolecular Structure & Dynamics. 11: 797-812. PMID 8204215 DOI: 10.1080/07391102.1994.10508033  1
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