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Alexander A. Balaeff, Ph.D. - Publications

Affiliations: 
1994-2002 Biophysics University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
 2005-2012 Chemistry Duke University, Durham, NC 
 2012-2017 NanoScience Technology Center University of Central Florida, Orlando, FL, United States 
 2018- NewLeaf Symbiotics 
Area:
theoretical and computational biophysics/biochemistry/biology
Website:
https://newleafsym.com/team_member/alexander-balaeff/
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Castaneda N, Zheng T, Rivera-Jacquez HJ, Lee HJ, Hyun J, Balaeff A, Huo Q, Kang H. Cations Modulate Actin Bundle Mechanics, Assembly Dynamics, and Structure. The Journal of Physical Chemistry. B. PMID 29608304 DOI: 10.1021/Acs.Jpcb.8B00663  0.347
2018 Sha R, Xiang L, Liu C, Balaeff A, Zhang Y, Zhang P, Li Y, Beratan DN, Tao N, Seeman NC. Charge splitters and charge transport junctions based on guanine quadruplexes. Nature Nanotechnology. PMID 29483600 DOI: 10.1038/S41565-018-0070-X  0.623
2018 Balaeff A, Kuznetsov AE. Three Ligands with Biomedical Importance: Binding to Small ZnS Quantum Dots The Journal of Physical Chemistry C. 122: 12454-12463. DOI: 10.1021/Acs.Jpcc.8B00936  0.302
2016 Ignatova T, Balaeff A, Blades M, Zheng M, Stoeckl P, Rotkin SV. Two-color spectroscopy of UV excited ssDNA complex with a single-wall nanotube photoluminescence probe: Fast relaxation by nucleobase autoionization mechanism Nano Research. 1-13. DOI: 10.1007/S12274-015-0938-0  0.531
2015 Zhang Y, Zhang WB, Liu C, Zhang P, Balaeff A, Beratan DN. DNA charge transport: Moving beyond 1D Surface Science. DOI: 10.1016/J.Susc.2016.03.011  0.664
2014 Zhang Y, Liu C, Balaeff A, Skourtis SS, Beratan DN. Biological charge transfer via flickering resonance. Proceedings of the National Academy of Sciences of the United States of America. 111: 10049-54. PMID 24965367 DOI: 10.1073/Pnas.1316519111  0.672
2012 Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Reppireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. Journal of the American Chemical Society. 134: 9335-42. PMID 22548314 DOI: 10.1021/Ja301677Z  0.711
2012 Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Correction to Effect of Backbone Flexibility on Charge Transfer Rates in Peptide Nucleic Acid Duplexes Journal of the American Chemical Society. 134: 13141-13141. DOI: 10.1021/Ja306598Z  0.71
2011 Balaeff A, Craig SL, Beratan DN. B-DNA to zip-DNA: simulating a DNA transition to a novel structure with enhanced charge-transport characteristics. The Journal of Physical Chemistry. A. 115: 9377-91. PMID 21598926 DOI: 10.1021/Jp110871G  0.634
2011 Venkatramani R, Keinan S, Balaeff A, Beratan DN. Nucleic Acid Charge Transfer: Black, White and Gray. Coordination Chemistry Reviews. 255: 635-648. PMID 21528017 DOI: 10.1016/J.Ccr.2010.12.010  0.746
2011 Venkatramani R, Davis KL, Wierzbinski E, Bezer S, Balaeff A, Keinan S, Paul A, Kocsis L, Beratan DN, Achim C, Waldeck DH. Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid. Journal of the American Chemical Society. 133: 62-72. PMID 21141966 DOI: 10.1021/Ja107622M  0.732
2011 Wolak MA, Balaeff A, Gutmann S, Helmrich HJ, Vosloo R, Beerbom MM, Wierzbinski E, Waldeck DH, Bezer S, Achim C, Beratan DN, Schlaf R. Electronic structure of self-assembled peptide nucleic acid thin films Journal of Physical Chemistry C. 115: 17123-17135. DOI: 10.1021/Jp201602J  0.601
2010 Keinan S, Venkatramani R, Balaeff A, Beratan DN. Is MD geometry sampling sufficient for nucleobase electronic structure analysis of et reactions? Comparing classical MD and QM/MM methods Journal of Physical Chemistry C. 114: 20496-20502. DOI: 10.1021/Jp104919G  0.728
2009 Beratan DN, Skourtis SS, Balabin IA, Balaeff A, Keinan S, Venkatramani R, Xiao D. Steering electrons on moving pathways. Accounts of Chemical Research. 42: 1669-78. PMID 19645446 DOI: 10.1021/Ar900123T  0.711
2009 Paul A, Bezer S, Venkatramani R, Kocsis L, Wierzbinski E, Balaeff A, Keinan S, Beratan DN, Achim C, Waldeck DH. Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer. Journal of the American Chemical Society. 131: 6498-507. PMID 19382798 DOI: 10.1021/Ja9000163  0.733
2008 He W, Hatcher E, Balaeff A, Beratan DN, Gil RR, Madrid M, Achim C. Solution structure of a peptide nucleic acid duplex from NMR data: features and limitations. Journal of the American Chemical Society. 130: 13264-73. PMID 18781753 DOI: 10.1021/Ja800652H  0.582
2008 Hatcher E, Balaeff A, Keinan S, Venkatramani R, Beratan DN. PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms. Journal of the American Chemical Society. 130: 11752-61. PMID 18693722 DOI: 10.1021/Ja802541E  0.768
2006 Balaeff A, Mahadevan L, Schulten K. Modeling DNA loops using the theory of elasticity Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 73. PMID 16605570 DOI: 10.1103/Physreve.73.031919  0.579
2005 Villa E, Balaeff A, Schulten K. Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation. Proceedings of the National Academy of Sciences of the United States of America. 102: 6783-8. PMID 15863616 DOI: 10.1073/Pnas.0409387102  0.657
2004 Balaeff A, Koudella CR, Mahadevan L, Schulten K. Modelling DNA loops using continuum and statistical mechanics Philosophical Transactions of the Royal Society a: Mathematical, Physical and Engineering Sciences. 362: 1355-1371. PMID 15306455 DOI: 10.1098/Rsta.2004.1384  0.565
2004 Balaeff A, Mahadevan L, Schulten K. Structural Basis for Cooperative DNA Binding by CAP and Lac Repressor Structure. 12: 123-132. PMID 14725772 DOI: 10.1016/J.Str.2003.12.004  0.533
2004 Villa E, Balaeff A, Mahadevan L, Schulten K. Multiscale Method for Simulating Protein-DNA Complexes Multiscale Modeling & Simulation. 2: 527-553. DOI: 10.1137/040604789  0.65
2000 Balaeff A, Mahadevan L, Shi G, Schulten K. Elastic Rod Model of DNA Loops Biochemical Society Transactions. 28: A446-A446. DOI: 10.1042/Bst028A446  0.522
1999 Balaeff A, Mahadevan L, Schulten K. Elastic Rod Model of a DNA Loop in theLacOperon Physical Review Letters. 83: 4900-4903. DOI: 10.1103/Physrevlett.83.4900  0.511
1998 Balaeff A, Churchill MEA, Schulten K. Structure prediction of a complex between the chromosomal protein HMG-D and DNA Proteins: Structure, Function and Genetics. 30: 113-135. PMID 9489920 DOI: 10.1002/(Sici)1097-0134(19980201)30:2<113::Aid-Prot2>3.0.Co;2-O  0.555
1994 Lysov YuP, Chernyi AA, Balaeff AA, Beattie KL, Mirzabekov AD. DNA sequencing by hybridization to oligonucleotide matrix. Calculation of continuous stacking hybridization efficiency. Journal of Biomolecular Structure & Dynamics. 11: 797-812. PMID 8204215 DOI: 10.1080/07391102.1994.10508033  0.333
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