Leonardo G. Trabuco, Ph.D. - Publications

2010 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
theoretical biophysics

23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Wulf SF, Ropars V, Fujita-Becker S, Oster M, Hofhaus G, Trabuco LG, Pylypenko O, Sweeney HL, Houdusse AM, Schröder RR. Force-producing ADP state of myosin bound to actin. Proceedings of the National Academy of Sciences of the United States of America. PMID 26976594 DOI: 10.1073/pnas.1516598113  0.8
2013 Schürmann N, Trabuco LG, Bender C, Russell RB, Grimm D. Molecular dissection of human Argonaute proteins by DNA shuffling. Nature Structural & Molecular Biology. 20: 818-26. PMID 23748378 DOI: 10.1038/nsmb.2607  0.8
2013 Russell RB, Apic G, Kalinina O, Trabuco L, Betts MJ, Lu Q. Structural Systems Biology: Modeling Interactions and Networks for Systems Studies Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. 9-19. DOI: 10.1016/B978-0-12-405926-9.00002-2  0.8
2012 Trabuco LG, Betts MJ, Russell RB. Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments. Methods (San Diego, Calif.). 58: 343-8. PMID 22884951 DOI: 10.1016/j.ymeth.2012.07.028  0.8
2012 Chan KY, Trabuco LG, Schreiner E, Schulten K. Cryo-electron microscopy modeling by the molecular dynamics flexible fitting method. Biopolymers. 97: 678-86. PMID 22696404 DOI: 10.1002/bip.22042  0.8
2012 Trabuco LG, Lise S, Petsalaki E, Russell RB. PepSite: prediction of peptide-binding sites from protein surfaces. Nucleic Acids Research. 40: W423-7. PMID 22600738 DOI: 10.1093/nar/gks398  0.8
2011 Schreiner E, Trabuco LG, Freddolino PL, Schulten K. Stereochemical errors and their implications for molecular dynamics simulations. Bmc Bioinformatics. 12: 190. PMID 21605430 DOI: 10.1186/1471-2105-12-190  0.8
2011 Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J. Structural insights into cognate versus near-cognate discrimination during decoding. The Embo Journal. 30: 1497-507. PMID 21378755 DOI: 10.1038/emboj.2011.58  0.8
2011 Li W, Trabuco LG, Schulten K, Frank J. Molecular dynamics of EF-G during translocation. Proteins. 79: 1478-86. PMID 21365677 DOI: 10.1002/prot.22976  0.8
2011 Trabuco LG, Schreiner E, Gumbart J, Hsin J, Villa E, Schulten K. Applications of the molecular dynamics flexible fitting method. Journal of Structural Biology. 173: 420-7. PMID 20932910 DOI: 10.1016/j.jsb.2010.09.024  0.8
2011 Gumbart J, Schreiner E, Trabuco LG, Chan KY, Schulten K. Viewing the mechanisms of translation through the computational microscope Molecular Machines in Biology: Workshop of the Cell. 142-157. DOI: 10.1017/CBO9781139003704.010  0.8
2010 Trabuco LG, Schreiner E, Eargle J, Cornish P, Ha T, Luthey-Schulten Z, Schulten K. The role of L1 stalk-tRNA interaction in the ribosome elongation cycle. Journal of Molecular Biology. 402: 741-60. PMID 20691699 DOI: 10.1016/j.jmb.2010.07.056  0.8
2010 Trabuco LG, Harrison CB, Schreiner E, Schulten K. Recognition of the regulatory nascent chain TnaC by the ribosome. Structure (London, England : 1993). 18: 627-37. PMID 20462496 DOI: 10.1016/j.str.2010.02.011  0.8
2009 Sener M, Hsin J, Trabuco LG, Villa E, Qian P, Hunter CN, Schulten K. Structural model and excitonic properties of the dimeric RC-LH1-PufX complex from Rhodobacter sphaeroides. Chemical Physics. 357: 188-197. PMID 20161332 DOI: 10.1016/j.chemphys.2009.01.003  0.8
2009 Seidelt B, Innis CA, Wilson DN, Gartmann M, Armache JP, Villa E, Trabuco LG, Becker T, Mielke T, Schulten K, Steitz TA, Beckmann R. Structural insight into nascent polypeptide chain-mediated translational stalling. Science (New York, N.Y.). 326: 1412-5. PMID 19933110 DOI: 10.1126/science.1177662  0.8
2009 Gumbart J, Trabuco LG, Schreiner E, Villa E, Schulten K. Regulation of the protein-conducting channel by a bound ribosome. Structure (London, England : 1993). 17: 1453-64. PMID 19913480 DOI: 10.1016/j.str.2009.09.010  0.8
2009 Hsin J, Gumbart J, Trabuco LG, Villa E, Qian P, Hunter CN, Schulten K. Protein-induced membrane curvature investigated through molecular dynamics flexible fitting. Biophysical Journal. 97: 321-9. PMID 19580770 DOI: 10.1016/j.bpj.2009.04.031  0.8
2009 Trabuco LG, Villa E, Schreiner E, Harrison CB, Schulten K. Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography. Methods (San Diego, Calif.). 49: 174-80. PMID 19398010 DOI: 10.1016/j.ymeth.2009.04.005  0.8
2009 Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 106: 1063-8. PMID 19122150 DOI: 10.1073/pnas.0811370106  0.8
2008 Trabuco LG, Villa E, Mitra K, Frank J, Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure (London, England : 1993). 16: 673-83. PMID 18462672 DOI: 10.1016/j.str.2008.03.005  0.8
2008 Eargle J, Black AA, Sethi A, Trabuco LG, Luthey-Schulten Z. Dynamics of Recognition between tRNA and elongation factor Tu. Journal of Molecular Biology. 377: 1382-405. PMID 18336835 DOI: 10.1016/j.jmb.2008.01.073  0.8
2007 Stone JE, Phillips JC, Freddolino PL, Hardy DJ, Trabuco LG, Schulten K. Accelerating molecular modeling applications with graphics processors. Journal of Computational Chemistry. 28: 2618-40. PMID 17894371 DOI: 10.1002/jcc.20829  0.8
2003 Cancherini DV, Trabuco LG, Rebouças NA, Kowaltowski AJ. ATP-sensitive K+ channels in renal mitochondria. American Journal of Physiology. Renal Physiology. 285: F1291-6. PMID 12952853 DOI: 10.1152/ajprenal.00103.2003  0.8
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