Fatemeh Khalili-Araghi, Ph.D. - Publications

2010 University of Illinois, Urbana-Champaign, Urbana-Champaign, IL 
theoretical biophysics

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Krueger E, Shim J, Fathizadeh A, Chang AN, Subei B, Yocham KM, Davis PH, Graugnard E, Khalili-Araghi F, Bashir R, Estrada D, Fologea D. Modelling and Analysis of Intercalant Effects on Circular DNA Conformation. Acs Nano. PMID 27559753 DOI: 10.1021/acsnano.6b04876  0.8
2015 Yasaei P, Behranginia A, Foroozan T, Asadi M, Kim K, Khalili-Araghi F, Salehi-Khojin A. Stable and Selective Humidity Sensing Using Stack of Black Phosphorus Flakes. Acs Nano. PMID 26401950 DOI: 10.1021/acsnano.5b03325  0.8
2015 Sánchez-Rodríguez JE, Khalili-Araghi F, Miranda P, Roux B, Holmgren M, Bezanilla F. A structural rearrangement of the Na+/K+-ATPase traps ouabain within the external ion permeation pathway. Journal of Molecular Biology. 427: 1335-44. PMID 25637661 DOI: 10.1016/j.jmb.2015.01.011  0.8
2015 Yasaei P, Fathizadeh A, Hantehzadeh R, Majee AK, El-Ghandour A, Estrada D, Foster C, Aksamija Z, Khalili-Araghi F, Salehi-Khojin A. Bimodal Phonon Scattering in Graphene Grain Boundaries Nano Letters. 15: 4532-4540. DOI: 10.1021/acs.nanolett.5b01100  0.8
2013 Khalili-Araghi F, Ziervogel B, Gumbart JC, Roux B. Molecular dynamics simulations of membrane proteins under asymmetric ionic concentrations. The Journal of General Physiology. 142: 465-75. PMID 24081985 DOI: 10.1085/jgp.201311014  0.8
2012 Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations. The Journal of General Physiology. 140: 587-94. PMID 23183694 DOI: 10.1085/jgp.201210873  0.8
2012 Khalili-Araghi F, Tajkhorshid E, Roux B, Schulten K. Molecular dynamics investigation of the ω-current in the Kv1.2 voltage sensor domains. Biophysical Journal. 102: 258-67. PMID 22339862 DOI: 10.1016/j.bpj.2011.10.057  0.8
2012 Gumbart J, Khalili-Araghi F, Sotomayor M, Roux B. Constant electric field simulations of the membrane potential illustrated with simple systems. Biochimica Et Biophysica Acta. 1818: 294-302. PMID 22001851 DOI: 10.1016/j.bbamem.2011.09.030  0.8
2012 Khalili-Araghi F, Ziervogel B, Roux B, Gumbart J. Membrane protein simulations under asymmetric ionic concentrations Acm International Conference Proceeding Series. DOI: 10.1145/2335755.2335812  0.8
2011 Sandtner W, Egwolf B, Khalili-Araghi F, Sánchez-Rodríguez JE, Roux B, Bezanilla F, Holmgren M. Ouabain binding site in a functioning Na+/K+ ATPase. The Journal of Biological Chemistry. 286: 38177-83. PMID 21911500 DOI: 10.1074/jbc.M111.267682  0.8
2011 Salehi-Khojin A, Khalili-Araghi F, Kuroda MA, Lin KY, Leburton JP, Masel RI. On the sensing mechanism in carbon nanotube chemiresistors. Acs Nano. 5: 153-8. PMID 21186822 DOI: 10.1021/nn101995f  0.8
2010 Khalili-Araghi F, Jogini V, Yarov-Yarovoy V, Tajkhorshid E, Roux B, Schulten K. Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel. Biophysical Journal. 98: 2189-98. PMID 20483327 DOI: 10.1016/j.bpj.2010.02.056  0.8
2009 Khalili-Araghi F, Gumbart J, Wen PC, Sotomayor M, Tajkhorshid E, Schulten K. Molecular dynamics simulations of membrane channels and transporters. Current Opinion in Structural Biology. 19: 128-37. PMID 19345092 DOI: 10.1016/j.sbi.2009.02.011  0.8
2006 Khalili-Araghi F, Tajkhorshid E, Schulten K. Dynamics of K+ ion conduction through Kv1.2. Biophysical Journal. 91: L72-4. PMID 16844753 DOI: 10.1529/biophysj.106.091926  0.8
2003 Park S, Khalili-Araghi F, Tajkhorshid E, Schulten K. Free energy calculation from steered molecular dynamics simulations using Jarzynski's equality Journal of Chemical Physics. 119: 3559-3566. DOI: 10.1063/1.1590311  0.8
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