Christopher A. Voigt, Ph.D. - Publications

2003 California Institute of Technology, Pasadena, CA 
Protein engineering, directed protein evolution, structure-guided protein recombination, biocatalysis, biofuels

85 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Shin J, Zhang S, Der BS, Nielsen AA, Voigt CA. Programming Escherichia coli to function as a digital display. Molecular Systems Biology. 16: e9401. PMID 32141239 DOI: 10.15252/msb.20199401  0.32
2019 Ryu MH, Zhang J, Toth T, Khokhani D, Geddes BA, Mus F, Garcia-Costas A, Peters JW, Poole PS, Ané JM, Voigt CA. Control of nitrogen fixation in bacteria that associate with cereals. Nature Microbiology. PMID 31844298 DOI: 10.1038/s41564-019-0631-2  0.4
2019 Burén S, Pratt K, Jiang X, Guo Y, Jimenez-Vicente E, Echavarri-Erasun C, Dean DR, Saaem I, Gordon DB, Voigt CA, Rubio LM. Biosynthesis of the nitrogenase active-site cofactor precursor NifB-co in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31767756 DOI: 10.1073/pnas.1904903116  0.76
2019 Meyer AJ, Saaem I, Silverman A, Varaljay V, Mickol R, Blum SM, Tobias AV, Schwalm ND, Mojadedi W, Onderko E, Bristol C, Liu S, Casini A, Eluere R, Moser F, ... ... Voigt CA, et al. Organism engineering for the bioproduction of the triaminotrinitrobenzene (TATB) precursor phloroglucinol (PG). Acs Synthetic Biology. PMID 31750651 DOI: 10.1021/acssynbio.9b00393  0.52
2019 Beal J, Nguyen T, Gorochowski TE, Goñi-Moreno A, Scott-Brown J, McLaughlin JA, Madsen C, Aleritsch B, Bartley B, Bhakta S, Bissell M, Castillo-Hair SM, Clancy K, Luna A, Le Novere N, ... ... Voigt CA, et al. Communicating Structure and Function in Synthetic Biology Diagrams. Acs Synthetic Biology. PMID 31348656 DOI: 10.1021/acssynbio.9b00139  0.96
2019 Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, ... ... Voigt CA, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. Journal of Integrative Bioinformatics. PMID 31199768 DOI: 10.1515/jib-2018-0101  0.96
2018 Moser F, Espah Borujeni A, Ghodasara AN, Cameron E, Park Y, Voigt CA. Dynamic control of endogenous metabolism with combinatorial logic circuits. Molecular Systems Biology. 14: e8605. PMID 30482789  0.52
2018 Meyer AJ, Segall-Shapiro TH, Glassey E, Zhang J, Voigt CA. Escherichia coli "Marionette" strains with 12 highly optimized small-molecule sensors. Nature Chemical Biology. PMID 30478458 DOI: 10.1038/s41589-018-0168-3  0.48
2018 Andrews LB, Nielsen AAK, Voigt CA. Cellular checkpoint control using programmable sequential logic. Science (New York, N.Y.). 361. PMID 30237327 DOI: 10.1126/science.aap8987  0.36
2018 Nielsen AAK, Voigt CA. Deep learning to predict the lab-of-origin of engineered DNA. Nature Communications. 9: 3135. PMID 30087331 DOI: 10.1038/s41467-018-05378-z  0.36
2018 Segall-Shapiro TH, Sontag ED, Voigt CA. Engineered promoters enable constant gene expression at any copy number in bacteria. Nature Biotechnology. PMID 29553576 DOI: 10.1038/nbt.4111  0.48
2018 Cox RS, Madsen C, McLaughlin J, Nguyen T, Roehner N, Bartley B, Bhatia S, Bissell M, Clancy K, Gorochowski T, Grünberg R, Luna A, Le Novere N, Pocock M, Sauro H, ... ... Voigt CA, et al. Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. Journal of Integrative Bioinformatics. PMID 29549707 DOI: 10.1515/jib-2017-0074  0.96
2018 Casini A, Chang FY, Eluere R, King A, Young EM, Dudley QM, Karim A, Pratt K, Bristol C, Forget A, Ghodasara A, Warden-Rothman R, Gan R, Cristofaro A, Espah Borujeni A, ... ... Voigt CA, et al. A pressure test to make 10 molecules in 90 days: External evaluation of methods to engineer biology. Journal of the American Chemical Society. PMID 29480720 DOI: 10.1021/jacs.7b13292  0.76
2017 Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA. Genetic circuit characterization and debugging using RNA-seq. Molecular Systems Biology. 13: 952. PMID 29122925  0.76
2017 Fernandez-Rodriguez J, Moser F, Song M, Voigt CA. Engineering RGB color vision into Escherichia coli. Nature Chemical Biology. PMID 28530708 DOI: 10.1038/nchembio.2390  0.52
2017 Song M, Sukovich DJ, Ciccarelli L, Mayr J, Fernandez-Rodriguez J, Mirsky EA, Tucker AC, Gordon DB, Marlovits TC, Voigt CA. Control of type III protein secretion using a minimal genetic system. Nature Communications. 8: 14737. PMID 28485369 DOI: 10.1038/ncomms14737  0.92
2017 Woodruff LB, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA. Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. Nucleic Acids Research. PMID 28100691 DOI: 10.1093/nar/gkx032  0.76
2016 Woodruff LB, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA. Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration. Nucleic Acids Research. PMID 28007941 DOI: 10.1093/nar/gkw1226  0.76
2016 Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE. DNAplotlib: programmable visualization of genetic designs and associated data. Acs Synthetic Biology. PMID 27744689 DOI: 10.1021/acssynbio.6b00252  0.76
2016 Fernandez-Rodriguez J, Voigt CA. Post-translational control of genetic circuits using Potyvirus proteases. Nucleic Acids Research. PMID 27298256 DOI: 10.1093/nar/gkw537  0.52
2016 Roehner N, Young E, Voigt CA, Gordon DB, Densmore D. Double Dutch: A Tool for Designing Combinatorial Libraries of Biological Systems. Acs Synthetic Biology. PMID 27110633 DOI: 10.1021/acssynbio.5b00232  0.76
2016 Mus F, Crook MB, Garcia K, Garcia Costas A, Geddes BA, Kouri ED, Paramasivan P, Ryu MH, Oldroyd GE, Poole PS, Udvardi MK, Voigt CA, Ané JM, Peters JW. Symbiotic Nitrogen Fixation and Challenges to Extending it to Non-Legumes. Applied and Environmental Microbiology. PMID 27084023 DOI: 10.1128/AEM.01055-16  1
2016 Nielsen AA, Der BS, Shin J, Vaidyanathan P, Paralanov V, Strychalski EA, Ross D, Densmore D, Voigt CA. Genetic circuit design automation. Science (New York, N.Y.). 352: aac7341. PMID 27034378 DOI: 10.1126/science.aac7341  1
2016 Smanski MJ, Zhou H, Claesen J, Shen B, Fischbach MA, Voigt CA. Synthetic biology to access and expand nature's chemical diversity. Nature Reviews. Microbiology. 14: 135-49. PMID 26876034 DOI: 10.1038/nrmicro.2015.24  1
2016 Brophy JA, Voigt CA. Antisense transcription as a tool to tune gene expression Molecular Systems Biology. 12. DOI: 10.15252/msb.20156540  1
2015 Patrick WG, Nielsen AA, Keating SJ, Levy TJ, Wang CW, Rivera JJ, Mondragón-Palomino O, Carr PA, Voigt CA, Oxman N, Kong DS. DNA Assembly in 3D Printed Fluidics. Plos One. 10: e0143636. PMID 26716448 DOI: 10.1371/journal.pone.0143636  0.36
2015 Fernández-Rodríguez J, Yang L, Gorochowski TE, Gordon B, Voigt CA. Memory and combinatorial logic based on DNA inversions: dynamics and evolutionary stability. Acs Synthetic Biology. PMID 26548807 DOI: 10.1021/acssynbio.5b00170  1
2015 Caliando BJ, Voigt CA. Targeted DNA degradation using a CRISPR device stably carried in the host genome. Nature Communications. 6: 6989. PMID 25988366 DOI: 10.1038/ncomms7989  1
2015 Vaidyanathan P, Der BS, Bhatia S, Roehner N, Silva R, Voigt CA, Densmore D. A Framework for Genetic Logic Synthesis Proceedings of the Ieee. 103: 2196-2207. DOI: 10.1109/JPROC.2015.2443832  0.32
2014 Nielsen AA, Voigt CA. Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks. Molecular Systems Biology. 10: 763. PMID 25422271 DOI: 10.15252/msb.20145735  1
2014 Smanski MJ, Bhatia S, Zhao D, Park Y, B A Woodruff L, Giannoukos G, Ciulla D, Busby M, Calderon J, Nicol R, Gordon DB, Densmore D, Voigt CA. Functional optimization of gene clusters by combinatorial design and assembly. Nature Biotechnology. 32: 1241-9. PMID 25419741 DOI: 10.1038/nbt.3063  1
2014 Stanton BC, Siciliano V, Ghodasara A, Wroblewska L, Clancy K, Trefzer AC, Chesnut JD, Weiss R, Voigt CA. Systematic transfer of prokaryotic sensors and circuits to mammalian cells. Acs Synthetic Biology. 3: 880-91. PMID 25360681 DOI: 10.1021/sb5002856  1
2014 Yang L, Nielsen AA, Fernandez-Rodriguez J, McClune CJ, Laub MT, Lu TK, Voigt CA. Permanent genetic memory with >1-byte capacity. Nature Methods. 11: 1261-6. PMID 25344638 DOI: 10.1038/nmeth.3147  0.52
2014 Segall-Shapiro TH, Meyer AJ, Ellington AD, Sontag ED, Voigt CA. A 'resource allocator' for transcription based on a highly fragmented T7 RNA polymerase. Molecular Systems Biology. 10: 742. PMID 25080493 DOI: 10.15252/msb.20145299  1
2014 Brophy JA, Voigt CA. Principles of genetic circuit design. Nature Methods. 11: 508-20. PMID 24781324 DOI: 10.1038/nmeth.2926  1
2014 Stanton BC, Nielsen AA, Tamsir A, Clancy K, Peterson T, Voigt CA. Genomic mining of prokaryotic repressors for orthogonal logic gates. Nature Chemical Biology. 10: 99-105. PMID 24316737 DOI: 10.1038/nchembio.1411  1
2014 Woodruff LBA, Mikkelsen T, Smanski MJ, Gordon DB, Voigt CA, Nicol R. Scalable, accurate, and systematic engineering of synthetic pathways: Massively multiplexed DNA assembly, next-gen sequence verification, and model-guided design Systems Biology 2014 - Topical Conference At the 2014 Aiche Annual Meeting. 2.  1
2013 Nielsen AA, Segall-Shapiro TH, Voigt CA. Advances in genetic circuit design: novel biochemistries, deep part mining, and precision gene expression. Current Opinion in Chemical Biology. 17: 878-92. PMID 24268307 DOI: 10.1016/j.cbpa.2013.10.003  1
2013 Rhodius VA, Segall-Shapiro TH, Sharon BD, Ghodasara A, Orlova E, Tabakh H, Burkhardt DH, Clancy K, Peterson TC, Gross CA, Voigt CA. Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters. Molecular Systems Biology. 9: 702. PMID 24169405 DOI: 10.1038/msb.2013.58  1
2013 Moser F, Horwitz A, Chen J, Lim W, Voigt CA. Genetic sensor for strong methylating compounds. Acs Synthetic Biology. 2: 614-24. PMID 24032656 DOI: 10.1021/sb400086p  1
2013 Chen YJ, Liu P, Nielsen AA, Brophy JA, Clancy K, Peterson T, Voigt CA. Characterization of 582 natural and synthetic terminators and quantification of their design constraints. Nature Methods. 10: 659-64. PMID 23727987 DOI: 10.1038/nmeth.2515  1
2012 Moser F, Broers NJ, Hartmans S, Tamsir A, Kerkman R, Roubos JA, Bovenberg R, Voigt CA. Genetic circuit performance under conditions relevant for industrial bioreactors. Acs Synthetic Biology. 1: 555-64. PMID 23656232 DOI: 10.1021/sb3000832  1
2012 Voigt CA. Synthetic biology. Acs Synthetic Biology. 1: 1-2. PMID 23651002 DOI: 10.1021/sb300001c  1
2012 Moon TS, Lou C, Tamsir A, Stanton BC, Voigt CA. Genetic programs constructed from layered logic gates in single cells. Nature. 491: 249-53. PMID 23041931 DOI: 10.1038/nature11516  1
2012 Lou C, Stanton B, Chen YJ, Munsky B, Voigt CA. Ribozyme-based insulator parts buffer synthetic circuits from genetic context. Nature Biotechnology. 30: 1137-42. PMID 23034349 DOI: 10.1038/nbt.2401  1
2012 Temme K, Hill R, Segall-Shapiro TH, Moser F, Voigt CA. Modular control of multiple pathways using engineered orthogonal T7 polymerases. Nucleic Acids Research. 40: 8773-81. PMID 22743271 DOI: 10.1093/nar/gks597  1
2012 Temme K, Zhao D, Voigt CA. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca. Proceedings of the National Academy of Sciences of the United States of America. 109: 7085-90. PMID 22509035 DOI: 10.1073/pnas.1120788109  1
2012 Voigt CA. Synthetic biology: Bacteria collaborate to sense arsenic. Nature. 481: 33. PMID 22222744 DOI: 10.1038/481033a  1
2011 Bokinsky G, Peralta-Yahya PP, George A, Holmes BM, Steen EJ, Dietrich J, Lee TS, Tullman-Ercek D, Voigt CA, Simmons BA, Keasling JD. Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 108: 19949-54. PMID 22123987 DOI: 10.1073/pnas.1106958108  0.84
2011 Clarke EJ, Voigt CA. Characterization of combinatorial patterns generated by multiple two-component sensors in E. coli that respond to many stimuli. Biotechnology and Bioengineering. 108: 666-75. PMID 21246512 DOI: 10.1002/bit.22966  1
2011 Toettcher JE, Voigt CA, Weiner OD, Lim WA. The promise of optogenetics in cell biology: interrogating molecular circuits in space and time. Nature Methods. 8: 35-8. PMID 21191370 DOI: 10.1038/nmeth.f.326  1
2011 Moon TS, Clarke EJ, Groban ES, Tamsir A, Clark RM, Eames M, Kortemme T, Voigt CA. Construction of a genetic multiplexer to toggle between chemosensory pathways in Escherichia coli. Journal of Molecular Biology. 406: 215-27. PMID 21185306 DOI: 10.1016/j.jmb.2010.12.019  1
2011 Tamsir A, Tabor JJ, Voigt CA. Robust multicellular computing using genetically encoded NOR gates and chemical 'wires'. Nature. 469: 212-5. PMID 21150903 DOI: 10.1038/nature09565  1
2011 Tabor JJ, Levskaya A, Voigt CA. Multichromatic control of gene expression in Escherichia coli. Journal of Molecular Biology. 405: 315-24. PMID 21035461 DOI: 10.1016/j.jmb.2010.10.038  1
2011 Densmore D, Horowitz M, Krishnaswamy S, Shen X, Arkin A, Winfree E, Voigt C. Joint DAC/IWBDA special session design and synthesis of biological circuits Proceedings - Design Automation Conference. 114-115.  1
2010 Fischbach M, Voigt CA. Prokaryotic gene clusters: a rich toolbox for synthetic biology. Biotechnology Journal. 5: 1277-96. PMID 21154668 DOI: 10.1002/biot.201000181  1
2010 Widmaier DM, Voigt CA. Quantification of the physiochemical constraints on the export of spider silk proteins by Salmonella type III secretion. Microbial Cell Factories. 9: 78. PMID 20973967 DOI: 10.1186/1475-2859-9-78  1
2010 Clancy K, Voigt CA. Programming cells: towards an automated 'Genetic Compiler'. Current Opinion in Biotechnology. 21: 572-81. PMID 20702081 DOI: 10.1016/j.copbio.2010.07.005  1
2009 Salis HM, Mirsky EA, Voigt CA. Automated design of synthetic ribosome binding sites to control protein expression. Nature Biotechnology. 27: 946-50. PMID 19801975 DOI: 10.1038/nbt.1568  1
2009 Widmaier DM, Tullman-Ercek D, Mirsky EA, Hill R, Govindarajan S, Minshull J, Voigt CA. Engineering the Salmonella type III secretion system to export spider silk monomers. Molecular Systems Biology. 5: 309. PMID 19756048 DOI: 10.1038/msb.2009.62  1
2009 Levskaya A, Weiner OD, Lim WA, Voigt CA. Spatiotemporal control of cell signalling using a light-switchable protein interaction. Nature. 461: 997-1001. PMID 19749742 DOI: 10.1038/nature08446  1
2009 Tabor JJ, Salis HM, Simpson ZB, Chevalier AA, Levskaya A, Marcotte EM, Voigt CA, Ellington AD. A synthetic genetic edge detection program. Cell. 137: 1272-81. PMID 19563759 DOI: 10.1016/j.cell.2009.04.048  1
2009 Salis H, Tamsir A, Voigt C. Engineering bacterial signals and sensors Contributions to Microbiology. 16: 194-225. PMID 19494587 DOI: 10.1159/000219381  1
2009 Groban ES, Clarke EJ, Salis HM, Miller SM, Voigt CA. Kinetic buffering of cross talk between bacterial two-component sensors. Journal of Molecular Biology. 390: 380-93. PMID 19445950 DOI: 10.1016/j.jmb.2009.05.007  1
2009 Bayer TS, Widmaier DM, Temme K, Mirsky EA, Santi DV, Voigt CA. Synthesis of methyl halides from biomass using engineered microbes. Journal of the American Chemical Society. 131: 6508-15. PMID 19378995 DOI: 10.1021/ja809461u  1
2009 Tabor JJ, Groban ES, Voigt CA. Performance characteristics for sensors and circuits used to program E. coli Systems Biology and Biotechnology of Escherichia Coli. 401-439. DOI: 10.1007/978-1-4020-9394-4_19  1
2008 Temme K, Salis H, Tullman-Ercek D, Levskaya A, Hong SH, Voigt CA. Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1. Journal of Molecular Biology. 377: 47-61. PMID 18242639 DOI: 10.1016/j.jmb.2007.12.044  0.96
2008 Voigt CA. Life from information. Nature Methods. 5: 27-8. PMID 18165804 DOI: 10.1038/nmeth0108-27  1
2008 May O, Voigt CA, Arnold FH. Enzyme engineering by directed evolution Enzyme Catalysis in Organic Synthesis: Second Edition. 95-138. DOI: 10.1002/9783527618262.ch4  1
2008 Salis H, Mirsky E, Voigt C. Predicting translation initiation rate from RNA sequence Aiche Annual Meeting, Conference Proceedings 1
2008 Salis H, Li Z, Niyogi K, Voigt C. Model-guided design of a refactored metabolic pathway Aiche Annual Meeting, Conference Proceedings 1
2007 Anderson JC, Voigt CA, Arkin AP. Environmental signal integration by a modular AND gate. Molecular Systems Biology. 3: 133. PMID 17700541 DOI: 10.1038/msb4100173  1
2006 Voigt CA. Genetic parts to program bacteria. Current Opinion in Biotechnology. 17: 548-57. PMID 16978856 DOI: 10.1016/j.copbio.2006.09.001  1
2006 Anderson JC, Clarke EJ, Arkin AP, Voigt CA. Environmentally controlled invasion of cancer cells by engineered bacteria. Journal of Molecular Biology. 355: 619-27. PMID 16330045 DOI: 10.1016/j.jmb.2005.10.076  1
2005 Voigt CA, Keasling JD. Programming cellular function. Nature Chemical Biology. 1: 304-7. PMID 16408063 DOI: 10.1038/nchembio1105-304  1
2005 Levskaya A, Chevalier AA, Tabor JJ, Simpson ZB, Lavery LA, Levy M, Davidson EA, Scouras A, Ellington AD, Marcotte EM, Voigt CA. Synthetic biology: engineering Escherichia coli to see light. Nature. 438: 441-2. PMID 16306980 DOI: 10.1038/nature04405  1
2005 Voigt CA, Wolf DM, Arkin AP. The Bacillus subtilis sin operon: an evolvable network motif. Genetics. 169: 1187-202. PMID 15466432 DOI: 10.1534/genetics.104.031955  1
2004 Otey CR, Silberg JJ, Voigt CA, Endelman JB, Bandara G, Arnold FH. Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach. Chemistry & Biology. 11: 309-18. PMID 15123260 DOI: 10.1016/j.chembiol.2004.02.018  0.76
2003 Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH. Library analysis of SCHEMA-guided protein recombination. Protein Science : a Publication of the Protein Society. 12: 1686-93. PMID 12876318 DOI: 10.1110/ps.0306603  0.76
2002 Voigt CA, Martinez C, Wang ZG, Mayo SL, Arnold FH. Protein building blocks preserved by recombination. Nature Structural Biology. 9: 553-8. PMID 12042875 DOI: 10.1038/nsb805  1
2002 Bolon DN, Voigt CA, Mayo SL. De novo design of biocatalysts. Current Opinion in Chemical Biology. 6: 125-9. PMID 12038994 DOI: 10.1016/S1367-5931(02)00303-4  1
2001 Voigt CA, Mayo SL, Arnold FH, Wang ZG. Computationally focusing the directed evolution of proteins. Journal of Cellular Biochemistry. Supplement. 58-63. PMID 11842429 DOI: 10.1002/jcb.10066  1
2001 Voigt CA, Mayo SL, Arnold FH, Wang ZG. Computational method to reduce the search space for directed protein evolution. Proceedings of the National Academy of Sciences of the United States of America. 98: 3778-83. PMID 11274394 DOI: 10.1073/pnas.051614498  1
2000 Voigt CA, Kauffman S, Wang ZG. Rational evolutionary design: the theory of in vitro protein evolution. Advances in Protein Chemistry. 55: 79-160. PMID 11050933  1
2000 Voigt CA, Gordon DB, Mayo SL. Trading accuracy for speed: A quantitative comparison of search algorithms in protein sequence design. Journal of Molecular Biology. 299: 789-803. PMID 10835284 DOI: 10.1006/jmbi.2000.3758  1
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