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Jeffrey B. Endelman, Ph.D. - Publications

Affiliations: 
2005 California Institute of Technology, Pasadena, CA 
Area:
Protein engineering, directed protein evolution, structure-guided protein recombination, biocatalysis, biofuels
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Amadeu RR, Ferrão LFV, Oliveira IdB, Benevenuto J, Endelman JB, Munoz PR. Impact of dominance effects on autotetraploid genomic prediction Crop Science. 60: 656-665. DOI: 10.1002/Csc2.20075  0.3
2019 de Bem Oliveira I, Resende MFR, Ferrão LFV, Amadeu RR, Endelman JB, Kirst M, Coelho ASG, Muñoz PR. Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction. G3 (Bethesda, Md.). PMID 30782769 DOI: 10.1534/G3.119.400059  0.393
2019 Matias FI, Xavier Meireles KG, Nagamatsu ST, Lima Barrios SC, Borges do Valle C, Carazzolle MF, Fritsche-Neto R, Endelman JB. Expected Genotype Quality and Diploidized Marker Data from Genotyping-by-Sequencing of Urochloa spp. Tetraploids The Plant Genome. 12: 190002. DOI: 10.3835/Plantgenome2019.01.0002  0.323
2019 Schmitz Carley CA, Coombs JJ, Clough ME, De Jong WS, Douches DS, Haynes KG, Higgins CR, Holm DG, Miller JC, Navarro FM, Novy RG, Palta JP, Parish DL, Porter GA, Sathuvalli VR, ... ... Endelman JB, et al. Genetic Covariance of Environments in the Potato National Chip Processing Trial Crop Science. 59: 107-114. DOI: 10.2135/Cropsci2018.05.0314  0.306
2019 Matias FI, Alves FC, Meireles KGX, Barrios SCL, do Valle CB, Endelman JB, Fritsche-Neto R. On the accuracy of genomic prediction models considering multi-trait and allele dosage in Urochloa spp. interspecific tetraploid hybrids Molecular Breeding. 39. DOI: 10.1007/S11032-019-1002-7  0.37
2018 Bali S, Patel G, Novy R, Vining K, Brown C, Holm D, Porter G, Endelman J, Thompson A, Sathuvalli V. Evaluation of genetic diversity among Russet potato clones and varieties from breeding programs across the United States. Plos One. 13: e0201415. PMID 30067845 DOI: 10.1371/Journal.Pone.0201415  0.365
2018 Endelman JB, Schmitz Carley CA, Bethke PC, Coombs JJ, Clough ME, da Silva WL, De Jong WS, Douches DS, Frederick CM, Haynes KG, Holm DG, Miller JC, Muñoz PR, Navarro FM, Novy RG, et al. Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato. Genetics. PMID 29514860 DOI: 10.1534/Genetics.118.300685  0.379
2017 Braun SR, Endelman JB, Haynes KG, Jansky SH. Quantitative Trait Loci for Resistance to Common Scab and Cold-Induced Sweetening in Diploid Potato. The Plant Genome. 10. PMID 29293805 DOI: 10.3835/Plantgenome2016.10.0110  0.307
2017 Schmitz Carley CA, Coombs JJ, Douches DS, Bethke PC, Palta JP, Novy RG, Endelman JB. Automated tetraploid genotype calling by hierarchical clustering. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 28070610 DOI: 10.1007/S00122-016-2845-5  0.307
2017 Endelman JB, Schmitz Carley CA, Douches DS, Coombs JJ, Bizimungu B, De Jong WS, Haynes KG, Holm DG, Miller JC, Novy RG, Palta JP, Parish DL, Porter GA, Sathuvalli VR, Thompson AL, et al. Pedigree Reconstruction with Genome-Wide Markers in Potato American Journal of Potato Research. 94: 184-190. DOI: 10.1007/S12230-016-9556-Y  0.364
2016 Rosyara UR, De Jong WS, Douches DS, Endelman JB. Software for Genome-Wide Association Studies in Autopolyploids and Its Application to Potato. The Plant Genome. 9. PMID 27898814 DOI: 10.3835/Plantgenome2015.08.0073  0.326
2016 Endelman JB, Jansky SH. Genetic mapping with an inbred line-derived F2 population in potato. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 26849236 DOI: 10.1007/S00122-016-2673-7  0.308
2015 Sallam AH, Endelman JB, Jannink JL, Smith KP. Assessing genomic selection prediction accuracy in a dynamic barley breeding population Plant Genome. 8. DOI: 10.3835/Plantgenome2014.05.0020  0.421
2014 Muñoz-Amatriaín M, Cuesta-Marcos A, Endelman JB, Comadran J, Bonman JM, Bockelman HE, Chao S, Russell J, Waugh R, Hayes PM, Muehlbauer GJ. The USDA barley core collection: genetic diversity, population structure, and potential for genome-wide association studies. Plos One. 9: e94688. PMID 24732668 DOI: 10.1371/Journal.Pone.0094688  0.36
2014 Plomion C, Chancerel E, Endelman J, Lamy JB, Mandrou E, Lesur I, Ehrenmann F, Isik F, Bink MCAM, van Heerwaarden J, Bouffier L. Genome-wide distribution of genetic diversity and linkage disequilibrium in a mass-selected population of maritime pine Bmc Genomics. 15. PMID 24581176 DOI: 10.1186/1471-2164-15-171  0.323
2014 Endelman JB, Plomion C. LPmerge: an R package for merging genetic maps by linear programming. Bioinformatics (Oxford, England). 30: 1623-4. PMID 24532720 DOI: 10.1093/Bioinformatics/Btu091  0.318
2014 Endelman JB, Atlin GN, Beyene Y, Semagn K, Zhang X, Sorrells ME, Jannink JL. Optimal design of preliminary yield trials with genome-wide markers Crop Science. 54: 48-59. DOI: 10.2135/Cropsci2013.03.0154  0.386
2013 Riedelsheimer C, Endelman JB, Stange M, Sorrells ME, Jannink JL, Melchinger AE. Genomic predictability of interconnected biparental maize populations. Genetics. 194: 493-503. PMID 23535384 DOI: 10.1534/Genetics.113.150227  0.402
2013 Dawson JC, Endelman JB, Heslot N, Crossa J, Poland J, Dreisigacker S, Manès Y, Sorrells ME, Jannink JL. The use of unbalanced historical data for genomic selection in an international wheat breeding program Field Crops Research. 154: 12-22. DOI: 10.1016/J.Fcr.2013.07.020  0.368
2012 Endelman JB, Jannink JL. Shrinkage estimation of the realized relationship matrix. G3 (Bethesda, Md.). 2: 1405-13. PMID 23173092 DOI: 10.1534/G3.112.004259  0.325
2012 Poland J, Endelman J, Dawson J, Rutkoski J, Wu S, Manes Y, Dreisigacker S, Crossa J, Sánchez-Villeda H, Sorrells M, Jannink JL. Genomic selection in wheat breeding using genotyping-by-sequencing Plant Genome. 5: 103-113. DOI: 10.3835/Plantgenome2012.06.0006  0.406
2011 Endelman JB. Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP The Plant Genome. 4: 250-255. DOI: 10.3835/Plantgenome2011.08.0024  0.351
2006 Otey CR, Landwehr M, Endelman JB, Hiraga K, Bloom JD, Arnold FH. Structure-guided recombination creates an artificial family of cytochromes P450. Plos Biology. 4: e112. PMID 16594730 DOI: 10.1371/Journal.Pbio.0040112  0.682
2004 Endelman JB, Silberg JJ, Wang ZG, Arnold FH. Site-directed protein recombination as a shortest-path problem. Protein Engineering, Design & Selection : Peds. 17: 589-94. PMID 15331774 DOI: 10.1093/Protein/Gzh067  0.672
2004 Silberg JJ, Endelman JB, Arnold FH. SCHEMA-guided protein recombination. Methods in Enzymology. 388: 35-42. PMID 15289059 DOI: 10.1016/S0076-6879(04)88004-2  0.702
2004 Otey CR, Silberg JJ, Voigt CA, Endelman JB, Bandara G, Arnold FH. Functional evolution and structural conservation in chimeric cytochromes p450: calibrating a structure-guided approach. Chemistry & Biology. 11: 309-18. PMID 15123260 DOI: 10.1016/J.Chembiol.2004.02.018  0.696
2003 Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH. Library analysis of SCHEMA-guided protein recombination. Protein Science : a Publication of the Protein Society. 12: 1686-93. PMID 12876318 DOI: 10.1110/Ps.0306603  0.681
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