David J. Pagliarini, Ph.D. - Related publications

Affiliations: 
2005 University of California, San Diego, La Jolla, CA 
Area:
Protein Tyrosine Phosphatase, Dual=specific Phosphatase, PTEN
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40 most relevant papers in past 60 days:
Year Citation  Score
2021 Maity S, Chakrabarti O. Mitochondrial protein import as a quality control sensor. Biology of the Cell. PMID 33870508 DOI: 10.1111/boc.202100002   
2021 Chen Z, Huang L, Tso A, Wang S, Fang X, Ouyang K, Han Z. Mitochondrial Chaperones and Proteases in Cardiomyocytes and Heart Failure. Frontiers in Molecular Biosciences. 8: 630332. PMID 33937324 DOI: 10.3389/fmolb.2021.630332   
2021 Uehara L, Saitoh S, Mori A, Sajiki K, Toyoda Y, Masuda F, Soejima S, Tahara Y, Yanagida M. Multiple nutritional phenotypes of fission yeast mutants defective in genes encoding essential mitochondrial proteins. Open Biology. 11: 200369. PMID 33823662 DOI: 10.1098/rsob.200369   
2021 S Bell H, Tower J. In vivo assay and modelling of protein and mitochondrial turnover during aging. Fly. 15: 60-72. PMID 34002678 DOI: 10.1080/19336934.2021.1911286   
2021 Páleníková P, Harbour ME, Prodi F, Minczuk M, Zeviani M, Ghelli A, Fernández-Vizarra E. Duplexing complexome profiling with SILAC to study human respiratory chain assembly defects. Biochimica Et Biophysica Acta. Bioenergetics. 1862: 148395. PMID 33600785 DOI: 10.1016/j.bbabio.2021.148395   
2021 Day NJ, Gaffrey MJ, Qian WJ. Stoichiometric Thiol Redox Proteomics for Quantifying Cellular Responses to Perturbations. Antioxidants (Basel, Switzerland). 10. PMID 33807006 DOI: 10.3390/antiox10030499   
2021 Kong KE, Fischer B, Meurer M, Kats I, Li Z, Rühle F, Barry JD, Kirrmaier D, Chevyreva V, San Luis BJ, Costanzo M, Huber W, Andrews BJ, Boone C, Knop M, et al. Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase. Molecular Cell. PMID 33974913 DOI: 10.1016/j.molcel.2021.04.018   
2021 Usman B, Zhao N, Nawaz G, Qin B, Liu F, Liu Y, Li R. CRISPR/Cas9 Guided Mutagenesis of Confers Increased Rice ( L.) Grain Length by Regulating Cysteine Proteinase Inhibitor and Ubiquitin-Related Proteins. International Journal of Molecular Sciences. 22. PMID 33810044 DOI: 10.3390/ijms22063225   
2021 Bolla JR, Fiorentino F, Robinson CV. Mass spectrometry informs the structure and dynamics of membrane proteins involved in lipid and drug transport. Current Opinion in Structural Biology. 70: 53-60. PMID 33964676 DOI: 10.1016/j.sbi.2021.03.014   
2021 Drew K, Wallingford JB, Marcotte EM. hu.MAP 2.0: integration of over 15,000 proteomic experiments builds a global compendium of human multiprotein assemblies. Molecular Systems Biology. 17: e10016. PMID 33973408 DOI: 10.15252/msb.202010016   
2021 Tain LS, Sehlke R, Meilenbrock RL, Leech T, Paulitz J, Chokkalingam M, Nagaraj N, Grönke S, Fröhlich J, Atanassov I, Mann M, Beyer A, Partridge L. Tissue-specific modulation of gene expression in response to lowered insulin signalling in . Elife. 10. PMID 33879316 DOI: 10.7554/eLife.67275   
2021 Fathi E, Yarbro JM, Homayouni R. NIPSNAP protein family emerges as a sensor of mitochondrial health. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2100014. PMID 33852167 DOI: 10.1002/bies.202100014   
2021 Türker F, Cook EK, Margolis SS. The proteasome and its role in the nervous system. Cell Chemical Biology. PMID 33905676 DOI: 10.1016/j.chembiol.2021.04.003   
2021 Balmant KM, Lawrence SR, Duong BV, Zhu F, Zhu N, Nicklay J, Chen S. Guard cell redox proteomics reveals a role of lipid transfer protein in plant defense. Journal of Proteomics. 104247. PMID 33940245 DOI: 10.1016/j.jprot.2021.104247   
2021 Fossati A, Li C, Uliana F, Wendt F, Frommelt F, Sykacek P, Heusel M, Hallal M, Bludau I, Capraz T, Xue P, Song J, Wollscheid B, Purcell AW, Gstaiger M, et al. PCprophet: a framework for protein complex prediction and differential analysis using proteomic data. Nature Methods. PMID 33859439 DOI: 10.1038/s41592-021-01107-5   
2021 Poudel S, Cope AL, O'Dell KB, Guss AM, Seo H, Trinh CT, Hettich RL. Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets. Biotechnology For Biofuels. 14: 116. PMID 33971924 DOI: 10.1186/s13068-021-01964-4   
2021 Zhang P, He W, Huang Y, Xiao K, Tang Y, Huang L, Huang X, Zhang J, Yang W, Liu R, Fu Q, Lu Y, Zhang M. Proteomic and phosphoproteomic profiles of Sertoli cells in buffalo. Theriogenology. 170: 1-14. PMID 33945957 DOI: 10.1016/j.theriogenology.2021.04.013   
2021 Goyal S, Tiwari S, Seth B, Tandon A, Shankar J, Sinha M, Singh SJ, Priya S, Chaturvedi RK. Bisphenol-A inhibits mitochondrial biogenesis via impairment of GFER mediated mitochondrial protein import in the rat brain hippocampus. Neurotoxicology. PMID 33878312 DOI: 10.1016/j.neuro.2021.04.001   
2021 Chen JJ, Fan Y, Boehning D. Regulation of Dynamic Protein S-Acylation. Frontiers in Molecular Biosciences. 8: 656440. PMID 33981723 DOI: 10.3389/fmolb.2021.656440   
2021 Yang Y, Yang J, Ma J, Yu Q, Han L. iTRAQ-mediated analysis of the relationship between proteomic changes and yak longissimus lumborum tenderness over the course of postmortem storage. Scientific Reports. 11: 10450. PMID 34001984 DOI: 10.1038/s41598-021-90012-0   
2021 Iruzubieta P, Goikoetxea-Usandizaga N, Barbier-Torres L, Serrano-Maciá M, Fernández-Ramos D, Fernández-Tussy P, Gutiérrez-de-Juan V, Lachiondo-Ortega S, Simon J, Bravo M, Lopitz-Otsoa F, Robles M, Ferre-Aracil C, Varela-Rey M, Elguezabal N, et al. Boosting mitochondria activity by silencing MCJ overcomes cholestasis-induced liver injury. Jhep Reports : Innovation in Hepatology. 3: 100276. PMID 33997750 DOI: 10.1016/j.jhepr.2021.100276   
2021 Sturgeon CM, Zanghi N, Smith HM, Davis EK, Robinson MR, Cabrera E, Holbrook MC, Segarra VA. YML018C protein localizes to the vacuolar membrane independently of Atg27p. Micropublication Biology. 2021. PMID 33997660 DOI: 10.17912/micropub.biology.000391   
2021 Li Z, Wang Q, Wang Y, Wang K, Liu Z, Zhang W, Ye M. An efficient approach based on basic strong cation exchange chromatography for enriching methylated peptides with high specificity for methylproteomics analysis. Analytica Chimica Acta. 1161: 338467. PMID 33896563 DOI: 10.1016/j.aca.2021.338467   
2021 Hamey JJ, Nguyen A, Wilkins MR. Discovery of Arginine Methylation, Phosphorylation, and Their Co-occurrence in Condensate-Associated Proteins in . Journal of Proteome Research. PMID 33856219 DOI: 10.1021/acs.jproteome.0c00927   
2021 Lin KH, Wilson GM, Blanco R, Steinert ND, Zhu WG, Coon JJ, Hornberger TA. A deep analysis of the proteomic and phosphoproteomic alterations that occur in skeletal muscle after the onset of immobilization. The Journal of Physiology. PMID 33873245 DOI: 10.1113/JP281071   
2021 Geny S, Pichard S, Brion A, Renaud JB, Jacquemin S, Concordet JP, Poterszman A. Tagging Proteins with Fluorescent Reporters Using the CRISPR/Cas9 System and Double-Stranded DNA Donors. Methods in Molecular Biology (Clifton, N.J.). 2247: 39-57. PMID 33301111 DOI: 10.1007/978-1-0716-1126-5_3   
2021 Kalathiya U, Padariya M, Faktor J, Coyaud E, Alfaro JA, Fahraeus R, Hupp TR, Goodlett DR. Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS). Biomolecules. 11. PMID 33806612 DOI: 10.3390/biom11030382   
2021 Corpas FJ, González-Gordo S, Palma JM. Nitric Oxide (NO) Scaffolds the Peroxisomal Protein-Protein Interaction Network in Higher Plants. International Journal of Molecular Sciences. 22. PMID 33671021 DOI: 10.3390/ijms22052444   
2021 Singh A, Phogat J, Yadav A, Dabur R. The dependency of autophagy and ubiquitin proteasome system during skeletal muscle atrophy. Biophysical Reviews. 13: 203-219. PMID 33927785 DOI: 10.1007/s12551-021-00789-7   
2021 Nicholls DG. Mitochondrial proton leaks and uncoupling proteins. Biochimica Et Biophysica Acta. Bioenergetics. 1862: 148428. PMID 33798544 DOI: 10.1016/j.bbabio.2021.148428   
2021 Liu J, Dong W, Wong TY, Qiu C, Wu J, Zhao J, Xia J, Xie S, Song X. Proteome-wide analysis of protein alterations in response to aristolochic acids in rat kidney and liver tissues. Molecular Omics. PMID 34008672 DOI: 10.1039/d1mo00015b   
2021 Das JK, Roy S, Guzzi PH. Analyzing host-viral interactome of SARS-CoV-2 for identifying vulnerable host proteins during COVID-19 pathogenesis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 104921. PMID 34004362 DOI: 10.1016/j.meegid.2021.104921   
2021 Al-Majdoub ZM, Couto N, Achour B, Harwood MD, Carlson G, Warhurst G, Barber J, Rostami-Hodjegan A. Quantification of Proteins Involved in Intestinal Epithelial Handling of Xenobiotics. Clinical Pharmacology and Therapeutics. 109: 1136-1146. PMID 33113152 DOI: 10.1002/cpt.2097   
2021 Nemeria NS, Zhang X, Leandro J, Zhou J, Yang L, Houten SM, Jordan F. Toward an Understanding of the Structural and Mechanistic Aspects of Protein-Protein Interactions in 2-Oxoacid Dehydrogenase Complexes. Life (Basel, Switzerland). 11. PMID 33946784 DOI: 10.3390/life11050407   
2021 Hu M, Fang J, Wang H, Zhou S. Proteome and Phosphoproteome Analyses Reveal the Kinase Regulatory Network Involved in Glycogen Synthesis Kinase 3β. Frontiers in Genetics. 12: 657140. PMID 33897769 DOI: 10.3389/fgene.2021.657140   
2021 Swensen AC, He J, Fang AC, Ye Y, Nicora CD, Shi T, Liu AY, Sigdel TK, Sarwal MM, Qian WJ. A Comprehensive Urine Proteome Database Generated From Patients With Various Renal Conditions and Prostate Cancer. Frontiers in Medicine. 8: 548212. PMID 33928097 DOI: 10.3389/fmed.2021.548212   
2021 Wang JY, Zhang W, Roehrl VB, Roehrl MW, Roehrl MH. An Autoantigen-ome from HS-Sultan B-Lymphoblasts Offers a Molecular Map for Investigating Autoimmune Sequelae of COVID-19. Biorxiv : the Preprint Server For Biology. PMID 33851168 DOI: 10.1101/2021.04.05.438500   
2021 Michel EJS, Ponnala L, van Wijk KJ. Tissue-type specific accumulation of the plastoglobular proteome, transcriptional networks and plastoglobular functions. Journal of Experimental Botany. PMID 33884419 DOI: 10.1093/jxb/erab175   
2021 Khanal DD, Tasharofi S, Azizi M, Khaledi MG. Improved Protein Coverage in Bottom-Up Proteomes Analysis Using Fluoroalcohol-Mediated Supramolecular Biphasic Systems With Mixed Amphiphiles for Sample Extraction, Fractionation, and Enrichment. Analytical Chemistry. PMID 33970614 DOI: 10.1021/acs.analchem.1c00030   
2021 Wang L, Sun X, Lu L, Marie A, Carrel D, Zhao S, Mille C, Song Q, Zhang Y, Ye S. Optoproteomics elucidates the interactome of L-type amino acid transporter 3 (LAT3). Chemical Communications (Cambridge, England). 57: 4734-4737. PMID 33977919 DOI: 10.1039/d0cc08423a