Nisha Rajagopal, Ph.D. - Publications

Affiliations: 
2013 Bioinformatics and System Biology University of California, San Diego, La Jolla, CA 
Area:
Inference of gene regulatory networks and determination of protein specificity

12/63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Hashimoto TB, Sherwood R, Kang DD, Rajagopal N, Barkal AA, Zeng H, Emons BJ, Srinivasan S, Jaakkola T, Gifford D. A synergistic DNA logic predicts genome-wide chromatin accessibility. Genome Research. PMID 27456004 DOI: 10.1101/gr.199778.115  0.36
2016 Rajagopal N, Srinivasan S, Kooshesh K, Guo Y, Edwards MD, Banerjee B, Syed T, Emons BJ, Gifford DK, Sherwood RI. High-throughput mapping of regulatory DNA. Nature Biotechnology. PMID 26807528 DOI: 10.1038/nbt.3468  0.36
2015 Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, et al. Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. PMID 26605523 DOI: 10.1038/nature16179  0.36
2015 Schultz MD, He Y, Whitaker JW, Hariharan M, Mukamel EA, Leung D, Rajagopal N, Nery JR, Urich MA, Chen H, Lin S, Lin Y, Jung I, Schmitt AD, Selvaraj S, et al. Human body epigenome maps reveal noncanonical DNA methylation variation. Nature. 523: 212-6. PMID 26030523 DOI: 10.1038/nature14465  0.36
2015 Leung D, Jung I, Rajagopal N, Schmitt A, Selvaraj S, Lee AY, Yen CA, Lin S, Lin Y, Qiu Y, Xie W, Yue F, Hariharan M, Ray P, Kuan S, et al. Integrative analysis of haplotype-resolved epigenomes across human tissues. Nature. 518: 350-4. PMID 25693566 DOI: 10.1038/nature14217  0.36
2015 Dixon JR, Jung I, Selvaraj S, Shen Y, Antosiewicz-Bourget JE, Lee AY, Ye Z, Kim A, Rajagopal N, Xie W, Diao Y, Liang J, Zhao H, Lobanenkov VV, Ecker JR, et al. Chromatin architecture reorganization during stem cell differentiation. Nature. 518: 331-6. PMID 25693564 DOI: 10.1038/nature14222  0.36
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Rajagopal N, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/nature14248  0.36
2014 Rajagopal N, Ernst J, Ray P, Wu J, Zhang M, Kellis M, Ren B. Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies. G3 (Bethesda, Md.). 4: 2051-63. PMID 25122670 DOI: 10.1534/g3.114.013565  0.36
2013 Hon GC, Rajagopal N, Shen Y, McCleary DF, Yue F, Dang MD, Ren B. Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues. Nature Genetics. 45: 1198-206. PMID 23995138 DOI: 10.1038/ng.2746  0.36
2013 Xie W, Schultz MD, Lister R, Hou Z, Rajagopal N, Ray P, Whitaker JW, Tian S, Hawkins RD, Leung D, Yang H, Wang T, Lee AY, Swanson SA, Zhang J, et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells. Cell. 153: 1134-48. PMID 23664764 DOI: 10.1016/j.cell.2013.04.022  0.36
2013 Rajagopal N, Xie W, Li Y, Wagner U, Wang W, Stamatoyannopoulos J, Ernst J, Kellis M, Ren B. RFECS: a random-forest based algorithm for enhancer identification from chromatin state. Plos Computational Biology. 9: e1002968. PMID 23526891 DOI: 10.1371/journal.pcbi.1002968  0.36
2011 Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, et al. Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. Cell. 146: 1016-28. PMID 21925322 DOI: 10.1016/j.cell.2011.08.008  0.36
Low-probability matches
1994 Krishnan S, Chandrasekharan S, Kumar VA, Rajagopal N, Hoda SQ. Delineation of heavy mineral provinces in the beach placer and inland Teri sands of Tamil Nadu Journal of Atomic Mineral Science. 2: 57-71.  0.01
2019 Hu S, Marineau JJ, Rajagopal N, Hamman KB, Choi YJ, Schmidt DR, Ke N, Johannessen L, Bradley MJ, Orlando DA, Alnemy SR, Ren Y, Ciblat S, Winter DK, Kabro A, et al. Discovery and characterization of SY-1365, a selective, covalent inhibitor of CDK7. Cancer Research. PMID 31064851 DOI: 10.1158/0008-5472.CAN-19-0119  0.08
2015 Lazik P, Rajagopal N, Shih O, Sinopoli B, Rowe A. Demo abstract: ALPS - The acoustic location processing system Sensys 2015 - Proceedings of the 13th Acm Conference On Embedded Networked Sensor Systems. 491-492. DOI: 10.1145/2809695.2817869  0.08
2015 Lazik P, Rajagopal N, Shih O, Sinopoli B, Rowe A. ALPS: A bluetooth and ultrasound platform for mapping and localization Sensys 2015 - Proceedings of the 13th Acm Conference On Embedded Networked Sensor Systems. 73-84. DOI: 10.1145/2809695.2809727  0.08
2015 Lymberopoulos D, Liu J, Yang X, Choudhury RR, Handziski V, Sen S, Lemic F, Busch J, Jiang Z, Zou H, Jiang H, Ashok A, Xu C, Ghose A, Ahmed N, ... ... Rajagopal N, et al. A realistic evaluation and comparison of indoor location technologies: Experiences and lessons learned Ipsn 2015 - Proceedings of the 14th International Symposium On Information Processing in Sensor Networks (Part of Cps Week). 178-189. DOI: 10.1145/2737095.2737726  0.08
2015 Lazik P, Rajagopal N, Sinopoli B, Rowe A. Ultrasonic time synchronization and ranging on smartphones Proceedings of the Ieee Real-Time and Embedded Technology and Applications Symposium, Rtas. 2015: 108-117. DOI: 10.1109/RTAS.2015.7108422  0.08
2014 Rajagopal N, Lazik P, Rowe A. Hybrid visible light communication for cameras and low-power embedded devices Vlcs 2014 - Proceedings of the 1st Acm Mobicom Workshop On Visible Light Communication Systems. 33-38. DOI: 10.1145/2643164.2643173  0.08
2014 Rajagopal N, Lazik P, Rowe A. Demonstration abstract: How many lights do you see? Ipsn 2014 - Proceedings of the 13th International Symposium On Information Processing in Sensor Networks (Part of Cps Week). 347-348. DOI: 10.1109/IPSN.2014.6846796  0.08
2014 Rajagopal N, Lazik P, Rowe A. Visual light landmarks for mobile devices Ipsn 2014 - Proceedings of the 13th International Symposium On Information Processing in Sensor Networks (Part of Cps Week). 249-260. DOI: 10.1109/IPSN.2014.6846757  0.08
2013 Sabir BI, Rahmat K, Bux SI, Rajagopal NS, Looi LM, Sia SF. A giant mastoid cholesteatoma with posterior cranial extension causing mass effect and obstructive hydrocephalus. Clinical Neurology and Neurosurgery. 115: 2192-6. PMID 23791432 DOI: 10.1016/j.clineuro.2013.05.023  0.08
2013 Rajagopal N, Giri S, Berges M, Rowe A. Demo abstract: A magnetic field-based appliance metering system Ipsn 2013 - Proceedings of the 12th International Conference On Information Processing in Sensor Networks, Part of Cpsweek 2013. 307-308. DOI: 10.1145/2461381.2461421  0.08
2013 Buevich M, Rajagopal N, Rowe A. Hardware assisted clock synchronization for real-time sensor networks Proceedings - Real-Time Systems Symposium. 268-277. DOI: 10.1109/RTSS.2013.34  0.08
2013 Rajagopal N, Giri S, Berges M, Rowe A. A magnetic field-based appliance metering system 2013 Acm/Ieee International Conference On Cyber-Physical Systems, Iccps 2013. 229-238. DOI: 10.1109/ICCPS.2013.6604017  0.08
2014 Rajagopal N, Prasad KV, Shah M, Rukstales C. A new data classification methodology to enhance utility data security 2014 Ieee Pes Innovative Smart Grid Technologies Conference, Isgt 2014. DOI: 10.1109/ISGT.2014.6816451  0.01
1964 Rahman A, Ghosal A, Sen N, Rajagopal NR, Gupta SD, Hussaini SHM, Roy AK. National Laboratories in India Nature. 203: 582-584. DOI: 10.1038/203582a0  0.01
2020 Neyaz L, Rajagopal N, Wells H, Fakhr MK. Molecular Characterization of Plasmids Associated With Strains Isolated From Various Retail Meats. Frontiers in Microbiology. 11: 223. PMID 32140145 DOI: 10.3389/fmicb.2020.00223  0.01
2019 Rajagopal N, Rajagopal A. Impact of transaction costs on supply operations and price competitiveness in wholesale marketing: a study in reference to Mexico International Journal of Logistics Systems and Management. 33: 525. DOI: 10.1504/IJLSM.2019.10023391  0.01
2017 Pal A, Koduri ND, Wang Z, Lopez Quiroz E, Chong A, Vuong M, Rajagopal N, Nguyen M, Roberts KP, Hussaini SR. Corrigendum to “Copper-catalyzed chemoselective cross-coupling reaction of thioamides and α-diazocarbonyl compounds: Synthesis of enaminones” [Tetrahedron Lett. 58 (2017) 586–589] Tetrahedron Letters. 58: 902. DOI: 10.1016/j.tetlet.2017.01.050  0.01
2017 Pal A, Koduri ND, Wang Z, Quiroz EL, Chong A, Vuong M, Rajagopal N, Nguyen M, Roberts KP, Hussaini SR. Copper-catalyzed chemoselective cross-coupling reaction of thioamides and α-diazocarbonyl compounds: Synthesis of enaminones Tetrahedron Letters. 58: 586-589. DOI: 10.1016/j.tetlet.2017.01.004  0.01
2016 Arun MK, Biju U, Rajagopal NN, Bagyaveereswaran V. Optimal tuning of fractional-order PID controller Advances in Intelligent Systems and Computing. 397: 401-408. DOI: 10.1007/978-81-322-2671-0_38  0.01
2016 Bagyaveereswaran V, Rajagopal NN, Anitha R. Image based autonomous navigation for a lander International Journal of Applied Engineering Research. 11: 2424-2428.  0.01
2014 Namdar A, Yahaya FM, Shan CP, Rajagopal NS. Effect of seashell powder on flexural and compressive strength of cement mortar in early age Advanced Materials Research. 894: 65-69. DOI: 10.4028/www.scientific.net/AMR.894.65  0.01
2014 Rajagopal N, Sekar KR, Sethuraman J. Thumb dimensional market analysis using CFS-methodology focusing on steel sectors International Journal of Applied Engineering Research. 9: 4983-4996.  0.01
2013 Rajagopal N. Automation in display testing - A breakthrough approach Sae Technical Papers. 1. DOI: 10.4271/2013-01-0061  0.01
2013 Rajagopal N, Prasad KV. Process framework for Smart Grid implementation 2013 Ieee Innovative Smart Grid Technologies - Asia, Isgt Asia 2013. DOI: 10.1109/ISGT-Asia.2013.6698766  0.01
2012 Rajagopal N. Tribal Health Care Services-Anecdotal Evidence of 'Health Trap' in Selected Areas: A Case Study Journal of Health Management. 14: 51-65. DOI: 10.1177/097206341101400105  0.01
2012 Pandya A, Shah M, Rajagopal N, Prasad KV. Experiences in delivering power system decision support tools over the web using Software-as-a-Service (SaaS) Model Annual Srii Global Conference, Srii. 846-849. DOI: 10.1109/SRII.2012.107  0.01
2011 Rajagopal N. Attributes of street markets as leisure destinations in growing cities International Journal of Leisure and Tourism Marketing. 2: 78. DOI: 10.1504/IJLTM.2011.037188  0.01
2010 Rajagopal N. Transformational process of health care choice of poor in Kerala Journal of Health Management. 12: 123-135. DOI: 10.1177/097206341001200202  0.01
2010 Shah M, Vaishnav R, Rajagopal N, Prasad KV. Delivering Power system decision support tools over the web Ieee Pes General Meeting, Pes 2010. DOI: 10.1109/PES.2010.5590154  0.01
2009 Rajagopal N. 'Crimson Nectar' blows-up in boardroom: a case of building marketing policy of a new generation product International Journal of Teaching and Case Studies. 2: 115. DOI: 10.1504/IJTCS.2009.031056  0.01
2009 Rajagopal N. Behavioural determinants in selling tourism services: a case study International Journal of Leisure and Tourism Marketing. 1: 183. DOI: 10.1504/IJLTM.2009.025158  0.01
2006 Rajagopal N, Devetsikiotis M. Modeling and optimization for the design of IMS networks Proceedings - Simulation Symposium. 2006: 34-40. DOI: 10.1109/ANSS.2006.27  0.01
2005 Earle GD, Medikonduri R, Rajagopal N, Narayanan V, Roddy PA. Tungsten-rhenium filament lifetime variability in low pressure oxygen environments Ieee Transactions On Plasma Science. 33: 1736-1737. DOI: 10.1109/TPS.2005.856413  0.01
2003 Kuruvila M, Pail GS, Prasad AJ, Rajagopal N. Molluscum contagiosum-like lesions in lepromatous leprosy. Indian Journal of Leprosy. 75: 53-6. PMID 15253395  0.01
2003 Verma B, Mallick S, Rajagopal NR. Intellectual strength of CSIR - An analysis of manpower Journal of Scientific and Industrial Research. 62: 168-172.  0.01
2001 Rajagopal NR. Analysis of age distribution of Bhatnagar prize winners Current Science. 80: 1116-1120.  0.01
1999 Manasia A, Stein JS, Lu Y, Alam R, Rajagopal N, Hannon E, Oropello JM, Benjamin E. Endothelin-1 (ET-1) levels in a porcine model of suprarenal and infrarenal aortic balloon occlusion Critical Care Medicine. 27: A174.  0.01
1999 Balachandran K, Rajagopal N. Optimal control of nonlinear delay systems with implicit derivative and quadratic performance Kybernetika. 35: 225-233.  0.01
1998 Balachandran K, Rajagopal N. Bang-bang control of a second order nonlinear plant with even and odd order nonlinearities Advances in Modeling and Analysis C. 51: 19-44.  0.01
1998 Balachandran K, Rajagopal N. Time-optimal synthesis for a special class of second order nonlinear control systems Engineering Simulation. 15: 687-700.  0.01
1997 Rajagopal NR, Kartikeyan G, Tewari R. Research as a career - A study of factors influencing choice Current Science. 73: 326-329.  0.01
1997 Rajagopal NR, Sehgal YP, Ahuja IML. Trends in outturn of scientific and technical manpower in India, Asia and the USA - A comparative analysis Journal of Scientific and Industrial Research. 56: 73-85.  0.01
1996 Pal AK, Ahuja IML, Das SR, Ranglani G, Chhiber OK, Nandy RK, Sehgal YP, Patil S, Rajagopal NR. The scientists' pool scheme : An appraisal Journal of Scientific and Industrial Research. 55: 765-771.  0.01
1982 Yadav SS, Aurora AL, Sharma S, Thomas S, Rajagopal N. Multicentric aneurysmal bone cyst (report of a case). Indian Journal of Cancer. 19: 116-9. PMID 7129516  0.01
1982 Rajagopal NA, Vaish SK, Burma DP. Disturbed LDH1, LDH2 ratio in different heart diseases. Indian Heart Journal. 34: 93-5. PMID 7118149  0.01
1981 Yadav SS, Rajagopal N, Thomas S. A rare finger injury. The Hand. 13: 199-201. PMID 7286808  0.01
1979 Rajagopal N, Srinivas K, Saravanan PK. Spinal muscular atrophy: clinical, genetic, and electrophysiological studies. The Journal of the Association of Physicians of India. 27: 463-5. PMID 528502  0.01
1966 Rajagopal NS, Saraswathy PK, Subbaram MR, Achaya KT. Separation of aliphatic dicarboxylic acids by thin-layer chromatography (TLC). Journal of Chromatography. 24: 217-9. PMID 5962324  0.01
1964 Rahman A, Sen N, Rajagopal NR. Scientific societies in India Nature. 204: 1250-1252. DOI: 10.1038/2041250a0  0.01
1962 Hill R, Rajagopal NM. Lameness in buffalo in N.E. Malaya The Journal of Agricultural Science. 59: 403-408. DOI: 10.1017/S0021859600015501  0.01
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