Nizar N. Batada, Ph.D. - Publications

2005 Stanford University, Palo Alto, CA 
computational structural biology

18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Ruiz S, Lopez-Contreras AJ, Gabut M, Marion RM, Gutierrez-Martinez P, Bua S, Ramirez O, Olalde I, Rodrigo-Perez S, Li H, Marques-Bonet T, Serrano M, Blasco MA, Batada NN, Fernandez-Capetillo O. Limiting replication stress during somatic cell reprogramming reduces genomic instability in induced pluripotent stem cells. Nature Communications. 6: 8036. PMID 26292731 DOI: 10.1038/ncomms9036  0.56
2014 Dulev S, Tkach J, Lin S, Batada NN. SET8 methyltransferase activity during the DNA double-strand break response is required for recruitment of 53BP1. Embo Reports. 15: 1163-74. PMID 25252681 DOI: 10.15252/embr.201439434  0.56
2014 Ji J, Sharma V, Qi S, Guarch ME, Zhao P, Luo Z, Fan W, Wang Y, Mbabaali F, Neculai D, Esteban MA, McPherson JD, Batada NN. Antioxidant supplementation reduces genomic aberrations in human induced pluripotent stem cells. Stem Cell Reports. 2: 44-51. PMID 24511469 DOI: 10.1016/j.stemcr.2013.11.004  0.56
2012 Nichols AC, Yoo J, Palma DA, Fung K, Franklin JH, Koropatnick J, Mymryk JS, Batada NN, Barrett JW. Frequent mutations in TP53 and CDKN2A found by next-generation sequencing of head and neck cancer cell lines. Archives of Otolaryngology--Head & Neck Surgery. 138: 732-9. PMID 22911296 DOI: 10.1001/archoto.2012.1558  0.56
2011 Hussein SM, Batada NN, Vuoristo S, Ching RW, Autio R, Närvä E, Ng S, Sourour M, Hämäläinen R, Olsson C, Lundin K, Mikkola M, Trokovic R, Peitz M, Brüstle O, et al. Copy number variation and selection during reprogramming to pluripotency. Nature. 471: 58-62. PMID 21368824 DOI: 10.1038/nature09871  0.56
2008 Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F. Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. Plos Biology. 6: e277. PMID 18998772 DOI: 10.1371/journal.pbio.0060277  0.56
2008 Warnecke T, Batada NN, Hurst LD. The impact of the nucleosome code on protein-coding sequence evolution in yeast. Plos Genetics. 4: e1000250. PMID 18989456 DOI: 10.1371/journal.pgen.1000250  0.56
2007 Batada NN, Urrutia AO, Hurst LD. Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trends in Genetics : Tig. 23: 480-4. PMID 17822800 DOI: 10.1016/j.tig.2007.08.003  0.56
2007 Batada NN, Hurst LD. Evolution of chromosome organization driven by selection for reduced gene expression noise. Nature Genetics. 39: 945-9. PMID 17660811 DOI: 10.1038/ng2071  0.56
2007 Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M. Still stratus not altocumulus: further evidence against the date/party hub distinction. Plos Biology. 5: e154. PMID 17564494 DOI: 10.1371/journal.pbio.0050154  0.56
2006 Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M. Stratus not altocumulus: a new view of the yeast protein interaction network. Plos Biology. 4: e317. PMID 16984220 DOI: 10.1371/journal.pbio.0040317  0.56
2006 Batada NN, Hurst LD, Tyers M. Evolutionary and physiological importance of hub proteins. Plos Computational Biology. 2: e88. PMID 16839197 DOI: 10.1371/journal.pcbi.0020088  0.56
2006 Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, ... ... Batada NN, et al. Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae. Journal of Biology. 5: 11. PMID 16762047 DOI: 10.1186/jbiol36  0.56
2006 Batada NN, Shepp LA, Siegmund DO, Levitt M. Spatial regulation and the rate of signal transduction activation. Plos Computational Biology. 2: e44. PMID 16699596 DOI: 10.1371/journal.pcbi.0020044  0.56
2005 Craske ML, Fivaz M, Batada NN, Meyer T. Spines and neurite branches function as geometric attractors that enhance protein kinase C action. The Journal of Cell Biology. 170: 1147-58. PMID 16186260 DOI: 10.1083/jcb.200503118  0.56
2004 Batada NN, Westover KD, Bushnell DA, Levitt M, Kornberg RD. Diffusion of nucleoside triphosphates and role of the entry site to the RNA polymerase II active center. Proceedings of the National Academy of Sciences of the United States of America. 101: 17361-4. PMID 15574497 DOI: 10.1073/pnas.0408168101  0.56
2004 Batada NN, Shepp LA, Siegmund DO. Stochastic model of protein-protein interaction: why signaling proteins need to be colocalized. Proceedings of the National Academy of Sciences of the United States of America. 101: 6445-9. PMID 15096590 DOI: 10.1073/pnas.0401314101  0.56
2004 Batada NN. CNplot: visualizing pre-clustered networks. Bioinformatics (Oxford, England). 20: 1455-6. PMID 14871859 DOI: 10.1093/bioinformatics/bth080  0.56
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