Yi Xing, Ph.D. - Publications

Affiliations: 
2006 University of California, Los Angeles, Los Angeles, CA 
Area:
Biochemistry, Molecular Biology

56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhu X, Wu G, Xing Y, Wang C, Yuan X, Li B. Evaluation of single and combined toxicity of bisphenol A and its analogues using a highly-sensitive micro-biosensor. Journal of Hazardous Materials. 381: 120908. PMID 31352154 DOI: 10.1016/j.jhazmat.2019.120908  0.32
2018 Zhang Z, Park E, Lin L, Xing Y. A panoramic view of RNA modifications: exploring new frontiers. Genome Biology. 19: 11. PMID 29382368 DOI: 10.1186/s13059-018-1394-4  0.32
2018 Park E, Pan Z, Zhang Z, Lin L, Xing Y. The Expanding Landscape of Alternative Splicing Variation in Human Populations. American Journal of Human Genetics. 102: 11-26. PMID 29304370 DOI: 10.1016/j.ajhg.2017.11.002  0.32
2017 Wang C, Chen Z, Wang L, Ma X, Xing Y, Li A, Zhang F, Zhang T. [Relapsing-remitting multiple sclerosis at remission stage treated with acupuncture:a randomized controlled trial]. Zhongguo Zhen Jiu = Chinese Acupuncture & Moxibustion. 37: 576-580. PMID 29231495 DOI: 10.13703/j.0255-2930.2017.06.002  0.32
2017 Park E, Guo J, Shen S, Demirdjian L, Wu YN, Lin L, Xing Y. Population and allelic variation of A-to-I RNA editing in human transcriptomes. Genome Biology. 18: 143. PMID 28754146 DOI: 10.1186/s13059-017-1270-7  0.32
2017 Wang J, Pan Y, Shen S, Lin L, Xing Y. rMATS-DVR: rMATS discovery of Differential Variants in RNA. Bioinformatics (Oxford, England). PMID 28334241 DOI: 10.1093/bioinformatics/btx128  0.32
2016 Xing Y, Wang C, Lu P, Li ZY, Liu YS, Yu H. [Removing Nano Particles by Filtration Using Materials with Ordered Mesoporous Structure]. Huan Jing Ke Xue= Huanjing Kexue. 37: 4538-4544. PMID 29965292 DOI: 10.13227/j.hjkx.201606079  0.32
2016 Wu F, Xing Y, Li L, Qian J, Qu W, Wen J, Miller DJ, Ye Y, Chen R, Amine K, Lu J. Facile Synthesis of Boron-Doped RGO as Cathode Material for High Energy Li-O2 Batteries. Acs Applied Materials & Interfaces. PMID 27549204 DOI: 10.1021/acsami.6b05403  0.36
2016 Bebee TW, Sims-Lucas S, Park JW, Bushnell D, Cieply B, Xing Y, Bates CM, Carstens RP. Ablation of the epithelial-specific splicing factor Esrp1 results in ureteric branching defects and reduced nephron number. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 27404344 DOI: 10.1002/dvdy.24431  0.92
2016 Damianov A, Ying Y, Lin CH, Lee JA, Tran D, Vashisht AA, Bahrami-Samani E, Xing Y, Martin KC, Wohlschlegel JA, Black DL. Rbfox Proteins Regulate Splicing as Part of a Large Multiprotein Complex LASR. Cell. 165: 606-619. PMID 27104978 DOI: 10.1016/j.cell.2016.03.040  0.92
2016 Cieply B, Park JW, Nakauka-Ddamba A, Bebee TW, Guo Y, Shang X, Lengner CJ, Xing Y, Carstens RP. Multiphasic and Dynamic Changes in Alternative Splicing during Induction of Pluripotency Are Coordinated by Numerous RNA-Binding Proteins. Cell Reports. PMID 27050523 DOI: 10.1016/j.celrep.2016.03.025  0.92
2016 Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome. Nucleic Acids Research. PMID 26896798 DOI: 10.1093/nar/gkw088  0.92
2016 Lin L, Jiang P, Park JW, Wang J, Lu ZX, Lam MP, Ping P, Xing Y. The contribution of Alu exons to the human proteome. Genome Biology. 17: 15. PMID 26821878 DOI: 10.1186/s13059-016-0876-5  0.92
2016 Xing Y, Li X, Zhang Y, Jiang C, Zhang W. Effect of spray parameters on the splashing of plasma-sprayed cast iron particles Journal Wuhan University of Technology, Materials Science Edition. 31: 399-403. DOI: 10.1007/s11595-016-1382-z  0.36
2015 Stein S, Lu ZX, Bahrami-Samani E, Park JW, Xing Y. Discover hidden splicing variations by mapping personal transcriptomes to personal genomes. Nucleic Acids Research. PMID 26578562 DOI: 10.1093/nar/gkv1099  0.92
2015 Bebee TW, Park JW, Sheridan KI, Warzecha CC, Cieply BW, Rohacek AM, Xing Y, Carstens RP. The splicing regulators Esrp1 and Esrp2 direct an epithelial splicing program essential for mammalian development. Elife. 4. PMID 26371508 DOI: 10.7554/eLife.08954  0.92
2015 Wang J, Ma MC, Mennie AK, Pettus JM, Xu Y, Lin L, Traxler MG, Jakoubek J, Atanur SS, Aitman TJ, Xing Y, Kwitek AE. Systems biology with high-throughput sequencing reveals genetic mechanisms underlying the metabolic syndrome in the Lyon hypertensive rat. Circulation. Cardiovascular Genetics. 8: 316-26. PMID 25573024 DOI: 10.1161/CIRCGENETICS.114.000520  0.92
2015 Wang J, Lu ZX, Tokheim CJ, Miller SE, Xing Y. Species-specific exon loss in human transcriptomes. Molecular Biology and Evolution. 32: 481-94. PMID 25398629 DOI: 10.1093/molbev/msu317  0.92
2015 Lu ZX, Huang Q, Park JW, Shen S, Lin L, Tokheim CJ, Henry MD, Xing Y. Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization. Molecular Cancer Research : McR. 13: 305-18. PMID 25274489 DOI: 10.1158/1541-7786.MCR-14-0366  0.92
2015 Yao D, Shen GH, Pan F, Xing YL, Guo Y. Wind-induced dynamic response of transmission tower using vector-form intrinsic finite element method Gongcheng Lixue/Engineering Mechanics. 32: 63-70. DOI: 10.6052/j.issn.1000-4750.2013.08.0795  0.32
2014 Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data. Proceedings of the National Academy of Sciences of the United States of America. 111: E5593-601. PMID 25480548 DOI: 10.1073/pnas.1419161111  0.92
2014 Batista PJ, Molinie B, Wang J, Qu K, Zhang J, Li L, Bouley DM, Lujan E, Haddad B, Daneshvar K, Carter AC, Flynn RA, Zhou C, Lim KS, Dedon P, ... ... Xing Y, et al. m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. Cell Stem Cell. 15: 707-19. PMID 25456834 DOI: 10.1016/j.stem.2014.09.019  0.92
2014 Lackford B, Yao C, Charles GM, Weng L, Zheng X, Choi EA, Xie X, Wan J, Xing Y, Freudenberg JM, Yang P, Jothi R, Hu G, Shi Y. Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal. The Embo Journal. 33: 878-89. PMID 24596251 DOI: 10.1002/embj.201386537  0.92
2014 Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL. Transcriptome-wide discovery of microRNA binding sites in human brain. Neuron. 81: 294-305. PMID 24389009 DOI: 10.1016/j.neuron.2013.10.062  0.92
2014 McLoughlin HS, Wan J, Spengler RM, Xing Y, Davidson BL. Human-specific microRNA regulation of FOXO1: implications for microRNA recognition element evolution. Human Molecular Genetics. 23: 2593-603. PMID 24368418 DOI: 10.1093/hmg/ddt655  0.92
2014 Lu L, Lu J, Xing Y, Wang C, Pan F. Statistical analysis of traffic accidents in shanghai river crossing tunnels and safety countermeasures Discrete Dynamics in Nature and Society. 2014. DOI: 10.1155/2014/824360  0.4
2014 Xing Y, Lu J, Lu L, Jiang C, Cai X. Comprehensive Safety Assessment Model of Road Long Tunnel Based on VISSIM Intelligent Automation and Soft Computing. 20: 501-514. DOI: 10.1080/10798587.2014.934595  0.4
2013 Heinicke LA, Nabet B, Shen S, Jiang P, van Zalen S, Cieply B, Russell JE, Xing Y, Carstens RP. The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation. Plos One. 8: e78031. PMID 24250749 DOI: 10.1371/journal.pone.0078031  0.92
2013 Ramachandran S, Karp PH, Osterhaus SR, Jiang P, Wohlford-Lenane C, Lennox KA, Jacobi AM, Praekh K, Rose SD, Behlke MA, Xing Y, Welsh MJ, McCray PB. Post-transcriptional regulation of cystic fibrosis transmembrane conductance regulator expression and function by microRNAs. American Journal of Respiratory Cell and Molecular Biology. 49: 544-51. PMID 23646886 DOI: 10.1165/rcmb.2012-0430OC  0.92
2013 Ji X, Wan J, Vishnu M, Xing Y, Liebhaber SA. αCP Poly(C) binding proteins act as global regulators of alternative polyadenylation. Molecular and Cellular Biology. 33: 2560-73. PMID 23629627 DOI: 10.1128/MCB.01380-12  0.92
2013 Xing Y, Lu J, Lu L, Jiang C, Cai X. Traffic safety evaluation model of road tunnels based on VISSIM Icte 2013 - Proceedings of the 4th International Conference On Transportation Engineering. 1075-1085. DOI: 10.1061/9780784413159.157  0.4
2013 Jiang C, Lu L, Lu J, Xing Y. Influence of access density of minor roads on arterial speed variance by TSIS Icte 2013 - Proceedings of the 4th International Conference On Transportation Engineering. 973-979. DOI: 10.1061/9780784413159.143  0.4
2012 Ramachandran S, Karp PH, Jiang P, Ostedgaard LS, Walz AE, Fisher JT, Keshavjee S, Lennox KA, Jacobi AM, Rose SD, Behlke MA, Welsh MJ, Xing Y, McCray PB. A microRNA network regulates expression and biosynthesis of wild-type and DeltaF508 mutant cystic fibrosis transmembrane conductance regulator. Proceedings of the National Academy of Sciences of the United States of America. 109: 13362-7. PMID 22853952 DOI: 10.1073/pnas.1210906109  0.92
2012 Dittmar KA, Jiang P, Park JW, Amirikian K, Wan J, Shen S, Xing Y, Carstens RP. Genome-wide determination of a broad ESRP-regulated posttranscriptional network by high-throughput sequencing. Molecular and Cellular Biology. 32: 1468-82. PMID 22354987 DOI: 10.1128/MCB.06536-11  0.92
2012 Shen S, Park JW, Huang J, Dittmar KA, Lu ZX, Zhou Q, Carstens RP, Xing Y. MATS: a Bayesian framework for flexible detection of differential alternative splicing from RNA-Seq data. Nucleic Acids Research. 40: e61. PMID 22266656 DOI: 10.1093/nar/gkr1291  0.92
2011 Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, et al. Human transcriptome array for high-throughput clinical studies. Proceedings of the National Academy of Sciences of the United States of America. 108: 3707-12. PMID 21317363 DOI: 10.1073/pnas.1019753108  0.92
2011 Shen S, Lin L, Cai JJ, Jiang P, Kenkel EJ, Stroik MR, Sato S, Davidson BL, Xing Y. Widespread establishment and regulatory impact of Alu exons in human genes. Proceedings of the National Academy of Sciences of the United States of America. 108: 2837-42. PMID 21282640 DOI: 10.1073/pnas.1012834108  0.92
2011 Liu S, Lin L, Jiang P, Wang D, Xing Y. A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species. Nucleic Acids Research. 39: 578-88. PMID 20864445 DOI: 10.1093/nar/gkq817  0.32
2010 Warzecha CC, Jiang P, Amirikian K, Dittmar KA, Lu H, Shen S, Guo W, Xing Y, Carstens RP. An ESRP-regulated splicing programme is abrogated during the epithelial-mesenchymal transition. The Embo Journal. 29: 3286-300. PMID 20711167 DOI: 10.1038/emboj.2010.195  0.92
2010 Lin L, Shen S, Jiang P, Sato S, Davidson BL, Xing Y. Evolution of alternative splicing in primate brain transcriptomes. Human Molecular Genetics. 19: 2958-73. PMID 20460271 DOI: 10.1093/hmg/ddq201  0.92
2010 Au KF, Jiang H, Lin L, Xing Y, Wong WH. Detection of splice junctions from paired-end RNA-seq data by SpliceMap. Nucleic Acids Research. 38: 4570-8. PMID 20371516 DOI: 10.1093/nar/gkq211  0.32
2010 Monteys AM, Spengler RM, Wan J, Tecedor L, Lennox KA, Xing Y, Davidson BL. Structure and activity of putative intronic miRNA promoters. Rna (New York, N.Y.). 16: 495-505. PMID 20075166 DOI: 10.1261/rna.1731910  0.92
2009 Lu H, Lin L, Sato S, Xing Y, Lee CJ. Predicting functional alternative splicing by measuring RNA selection pressure from multigenome alignments. Plos Computational Biology. 5: e1000608. PMID 20019791 DOI: 10.1371/journal.pcbi.1000608  0.92
2009 Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL. Adenosine deamination in human transcripts generates novel microRNA binding sites. Human Molecular Genetics. 18: 4801-7. PMID 19776031 DOI: 10.1093/hmg/ddp443  0.92
2009 Lin L, Liu S, Brockway H, Seok J, Jiang P, Wong WH, Xing Y. Using high-density exon arrays to profile gene expression in closely related species. Nucleic Acids Research. 37: e90. PMID 19474342 DOI: 10.1093/nar/gkp420  0.32
2009 Lin L, Jiang P, Shen S, Sato S, Davidson BL, Xing Y. Large-scale analysis of exonized mammalian-wide interspersed repeats in primate genomes. Human Molecular Genetics. 18: 2204-14. PMID 19324900 DOI: 10.1093/hmg/ddp152  0.92
2009 Boudreau RL, McBride JL, Martins I, Shen S, Xing Y, Carter BJ, Davidson BL. Nonallele-specific silencing of mutant and wild-type huntingtin demonstrates therapeutic efficacy in Huntington's disease mice. Molecular Therapy : the Journal of the American Society of Gene Therapy. 17: 1053-63. PMID 19240687 DOI: 10.1038/mt.2009.17  0.92
2008 Packer AN, Xing Y, Harper SQ, Jones L, Davidson BL. The bifunctional microRNA miR-9/miR-9* regulates REST and CoREST and is downregulated in Huntington's disease. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 14341-6. PMID 19118166 DOI: 10.1523/JNEUROSCI.2390-08.2008  0.92
2008 Lin L, Shen S, Tye A, Cai JJ, Jiang P, Davidson BL, Xing Y. Diverse splicing patterns of exonized Alu elements in human tissues. Plos Genetics. 4: e1000225. PMID 18841251 DOI: 10.1371/journal.pgen.1000225  0.92
2008 Parker DS, Hsiao RL, Xing Y, Resch AM, Lee CJ. Solving the problem of Trans-Genomic Query with alignment tables. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 5: 432-47. PMID 18670046 DOI: 10.1109/TCBB.2007.1073  0.92
2008 Xing Y, Lee C. Reconstruction of full-length isoforms from splice graphs. Methods in Molecular Biology (Clifton, N.J.). 452: 199-205. PMID 18566766 DOI: 10.1007/978-1-60327-159-2_10  0.92
2008 Chiao E, Elazar M, Xing Y, Xiong A, Kmet M, Millan MT, Glenn JS, Wong WH, Baker J. Isolation and transcriptional profiling of purified hepatic cells derived from human embryonic stem cells. Stem Cells (Dayton, Ohio). 26: 2032-41. PMID 18535157 DOI: 10.1634/stemcells.2007-0964  0.92
2007 Xing Y, Lee C. Relating alternative splicing to proteome complexity and genome evolution. Advances in Experimental Medicine and Biology. 623: 36-49. PMID 18380339  0.92
2007 Lee JA, Xing Y, Nguyen D, Xie J, Lee CJ, Black DL. Depolarization and CaM kinase IV modulate NMDA receptor splicing through two essential RNA elements. Plos Biology. 5: e40. PMID 17298178 DOI: 10.1371/journal.pbio.0050040  0.92
2005 Xing Y, Lee CJ. Protein modularity of alternatively spliced exons is associated with tissue-specific regulation of alternative splicing. Plos Genetics. 1: e34. PMID 16170410 DOI: 10.1371/journal.pgen.0010034  0.92
2004 Xing Y, Lee CJ. Negative selection pressure against premature protein truncation is reduced by alternative splicing and diploidy. Trends in Genetics : Tig. 20: 472-5. PMID 15363899 DOI: 10.1016/j.tig.2004.07.009  0.92
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