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Linh M. Tran, Ph.D. - Publications

Affiliations: 
2008 University of California, Los Angeles, Los Angeles, CA 
Area:
Chemical and Biomolecular Engineering
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Toste PA, Nguyen AH, Kadera BE, Duong M, Wu N, Gawlas I, Tran LM, Bikhchandani M, Li L, Patel SG, Dawson DW, Donahue TR. Chemotherapy-induced Inflammatory Gene Signature and Pro-tumorigenic Phenotype in Pancreatic CAFs via Stress-associated MAPK. Molecular Cancer Research : McR. PMID 26979711 DOI: 10.1158/1541-7786.MCR-15-0348  1
2016 Zhang B, Tran L, Emilsson V, Zhu J. Characterization of Genetic Networks Associated with Alzheimer's Disease. Methods in Molecular Biology (Clifton, N.J.). 1303: 459-77. PMID 26235085 DOI: 10.1007/978-1-4939-2627-5_28  1
2015 Toste PA, Li L, Kadera BE, Nguyen AH, Tran LM, Wu N, Madnick DL, Patel SG, Dawson DW, Donahue TR. p85α is a microRNA target and affects chemosensitivity in pancreatic cancer. The Journal of Surgical Research. 196: 285-93. PMID 25846727 DOI: 10.1016/j.jss.2015.02.071  1
2013 Smith CL, Arvedson TL, Cooke KS, Dickmann LJ, Forte C, Li H, Merriam KL, Perry VK, Tran L, Rottman JB, Maxwell JR. IL-22 regulates iron availability in vivo through the induction of hepcidin. Journal of Immunology (Baltimore, Md. : 1950). 191: 1845-55. PMID 23836059 DOI: 10.4049/jimmunol.1202716  0.36
2013 Farrell JJ, Toste P, Wu N, Li L, Wong J, Malkhassian D, Tran LM, Wu X, Li X, Dawson D, Wu H, Donahue TR. Endoscopically acquired pancreatic cyst fluid microRNA 21 and 221 are associated with invasive cancer. The American Journal of Gastroenterology. 108: 1352-9. PMID 23752880 DOI: 10.1038/ajg.2013.167  1
2013 Zhang B, Gaiteri C, Bodea LG, Wang Z, McElwee J, Podtelezhnikov AA, Zhang C, Xie T, Tran L, Dobrin R, Fluder E, Clurman B, Melquist S, Narayanan M, Suver C, et al. Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease. Cell. 153: 707-20. PMID 23622250 DOI: 10.1016/j.cell.2013.03.030  1
2013 Smith KB, Tran LM, Tam BM, Shurell EM, Li Y, Braas D, Tap WD, Christofk HR, Dry SM, Eilber FC, Wu H. Novel dedifferentiated liposarcoma xenograft models reveal PTEN down-regulation as a malignant signature and response to PI3K pathway inhibition. The American Journal of Pathology. 182: 1400-11. PMID 23416162 DOI: 10.1016/j.ajpath.2013.01.002  1
2013 Pervin S, Tran L, Urman R, Braga M, Parveen M, Li SA, Chaudhuri G, Singh R. Oxidative stress specifically downregulates survivin to promote breast tumour formation. British Journal of Cancer. 108: 848-58. PMID 23403820 DOI: 10.1038/bjc.2013.40  1
2012 Jiao J, Hindoyan A, Wang S, Tran LM, Goldstein AS, Lawson D, Chen D, Li Y, Guo C, Zhang B, Fazli L, Gleave M, Witte ON, Garraway IP, Wu H. Identification of CD166 as a surface marker for enriching prostate stem/progenitor and cancer initiating cells. Plos One. 7: e42564. PMID 22880034 DOI: 10.1371/journal.pone.0042564  1
2012 Hill R, Li Y, Tran LM, Dry S, Calvopina JH, Garcia A, Kim C, Wang Y, Donahue TR, Herschman HR, Wu H. Cell intrinsic role of COX-2 in pancreatic cancer development. Molecular Cancer Therapeutics. 11: 2127-37. PMID 22784710 DOI: 10.1158/1535-7163.MCT-12-0342  1
2012 Mulholland DJ, Kobayashi N, Ruscetti M, Zhi A, Tran LM, Huang J, Gleave M, Wu H. Pten loss and RAS/MAPK activation cooperate to promote EMT and metastasis initiated from prostate cancer stem/progenitor cells. Cancer Research. 72: 1878-89. PMID 22350410 DOI: 10.1158/0008-5472.CAN-11-3132  1
2012 Tran LM, Chang CJ, Plaisier S, Wu S, Dang J, Mischel PS, Liao JC, Graeber TG, Wu H. Determining PTEN functional status by network component deduced transcription factor activities. Plos One. 7: e31053. PMID 22347425 DOI: 10.1371/journal.pone.0031053  1
2012 Donahue TR, Tran LM, Hill R, Li Y, Kovochich A, Calvopina JH, Patel SG, Wu N, Hindoyan A, Farrell JJ, Li X, Dawson DW, Wu H. Integrative survival-based molecular profiling of human pancreatic cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 1352-63. PMID 22261810 DOI: 10.1158/1078-0432.CCR-11-1539  1
2011 Tran LM, Zhang B, Zhang Z, Zhang C, Xie T, Lamb JR, Dai H, Schadt EE, Zhu J. Inferring causal genomic alterations in breast cancer using gene expression data. Bmc Systems Biology. 5: 121. PMID 21806811 DOI: 10.1186/1752-0509-5-121  1
2011 Pervin S, Tran A, Tran L, Urman R, Braga M, Chaudhuri G, Singh R. Reduced association of anti-apoptotic protein Mcl-1 with E3 ligase Mule increases the stability of Mcl-1 in breast cancer cells British Journal of Cancer. 105: 428-437. PMID 21730980 DOI: 10.1038/bjc.2011.242  1
2011 Mulholland DJ, Tran LM, Li Y, Cai H, Morim A, Wang S, Plaisier S, Garraway IP, Huang J, Graeber TG, Wu H. Cell autonomous role of PTEN in regulating castration-resistant prostate cancer growth. Cancer Cell. 19: 792-804. PMID 21620777 DOI: 10.1016/j.ccr.2011.05.006  1
2010 Tran LM, Hyduke DR, Liao JC. Trimming of mammalian transcriptional networks using network component analysis. Bmc Bioinformatics. 11: 511. PMID 20942926 DOI: 10.1186/1471-2105-11-511  1
2009 Dean JT, Tran L, Beaven S, Tontonoz P, Reue K, Dipple KM, Liao JC. Resistance to diet-induced obesity in mice with synthetic glyoxylate shunt. Cell Metabolism. 9: 525-36. PMID 19490907 DOI: 10.1016/j.cmet.2009.04.008  1
2009 Wong WW, Tran LM, Liao JC. A hidden square-root boundary between growth rate and biomass yield. Biotechnology and Bioengineering. 102: 73-80. PMID 18683253 DOI: 10.1002/bit.22046  1
2008 Tran LM, Rizk ML, Liao JC. Ensemble modeling of metabolic networks. Biophysical Journal. 95: 5606-17. PMID 18820235 DOI: 10.1529/biophysj.108.135442  1
2008 Jarboe LR, Hyduke DR, Tran LM, Chou KJ, Liao JC. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. The Journal of Biological Chemistry. 283: 5148-57. PMID 18070885 DOI: 10.1074/jbc.M706018200  1
2008 Rizk ML, Tran LM, Liao JC. Ensemble modeling of metabolic networks and identification of enzyme targets for metabolic engineering Aiche Annual Meeting, Conference Proceedings.  1
2007 Hyduke DR, Jarboe LR, Tran LM, Chou KJ, Liao JC. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 104: 8484-9. PMID 17494765 DOI: 10.1073/pnas.0610888104  1
2006 Brynildsen MP, Tran LM, Liao JC. A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics (Oxford, England). 22: 3040-6. PMID 17060361 DOI: 10.1093/bioinformatics/btl541  1
2006 Brynildsen MP, Tran LM, Liao JC. Versatility and connectivity efficiency of bipartite transcription networks. Biophysical Journal. 91: 2749-59. PMID 16815895 DOI: 10.1529/biophysj.106.082560  1
2006 Galbraith SJ, Tran LM, Liao JC. Transcriptome network component analysis with limited microarray data. Bioinformatics (Oxford, England). 22: 1886-94. PMID 16766556 DOI: 10.1093/bioinformatics/btl279  1
2005 Kao KC, Tran LM, Liao JC. A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. The Journal of Biological Chemistry. 280: 36079-87. PMID 16141204 DOI: 10.1074/jbc.M508202200  1
2005 Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC. gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation. Metabolic Engineering. 7: 128-41. PMID 15781421 DOI: 10.1016/j.ymben.2004.12.001  1
2005 Tran LM, Galbraith SJ, Liao JC. Generalization of network component analysis Aiche Annual Meeting, Conference Proceedings. 9298.  1
2005 Jarboe LR, Hyduke D, Tran LM, Liao JC. Chemogenomic analysis of signaling pathways for reactive nitrogen oxide species in escherichia coli Aiche Annual Meeting, Conference Proceedings. 10384.  1
2003 Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP. Network component analysis: reconstruction of regulatory signals in biological systems. Proceedings of the National Academy of Sciences of the United States of America. 100: 15522-7. PMID 14673099 DOI: 10.1073/pnas.2136632100  1
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