Year |
Citation |
Score |
2023 |
Yanagawa J, Tran LM, Salehi-Rad R, Lim RJ, Dumitras C, Fung E, Wallace WD, Prosper AE, Fishbein G, Shea C, Hong R, Kahangi B, Deng JJ, Gower AC, Liu B, et al. Single-cell characterization of pulmonary nodules implicates suppression of immunosurveillance across early stages of lung adenocarcinoma. Cancer Research. PMID 37477508 DOI: 10.1158/0008-5472.CAN-23-0128 |
0.494 |
|
2020 |
Dost AFM, Moye AL, Vedaie M, Tran LM, Fung E, Heinze D, Villacorta-Martin C, Huang J, Hekman R, Kwan JH, Blum BC, Louie SM, Rowbotham SP, Sainz de Aja J, Piper ME, et al. Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells. Cell Stem Cell. PMID 32891189 DOI: 10.1016/J.Stem.2020.07.022 |
0.57 |
|
2020 |
Cheng J, Huang Y, Zhang X, Yu Y, Wu S, Jiao J, Tran L, Zhang W, Liu R, Zhang L, Wang M, Wang M, Yan W, Wu Y, Chi F, et al. TRIM21 and PHLDA3 negatively regulate the crosstalk between the PI3K/AKT pathway and PPP metabolism. Nature Communications. 11: 1880. PMID 32312982 DOI: 10.1038/S41467-020-15819-3 |
0.354 |
|
2020 |
Lee MH, Yanagawa J, Tran L, Walser TC, Bisht B, Fung E, Park SJ, Zeng G, Krysan K, Wallace WD, Paul MK, Girard L, Gao B, Minna JD, Dubinett SM, et al. FRA1 contributes to MEK-ERK pathway-dependent PD-L1 upregulation by KRAS mutation in premalignant human bronchial epithelial cells. American Journal of Translational Research. 12: 409-427. PMID 32194893 |
0.488 |
|
2018 |
Walser TC, Jing Z, Tran LM, Lin YQ, Yakobian N, Wang G, Krysan K, Zhu LX, Sharma S, Lee MH, Belperio JA, Ooi AT, Gomperts BN, Shay JW, Larsen JE, et al. Silencing the Snail-dependent RNA splice regulator ESRP1 drives malignant transformation of human pulmonary epithelial cells. Cancer Research. PMID 29431637 DOI: 10.1158/0008-5472.Can-17-0315 |
0.31 |
|
2016 |
Zhang B, Tran L, Emilsson V, Zhu J. Characterization of Genetic Networks Associated with Alzheimer's Disease. Methods in Molecular Biology (Clifton, N.J.). 1303: 459-77. PMID 26235085 DOI: 10.1007/978-1-4939-2627-5_28 |
0.407 |
|
2015 |
Ruscetti M, Dadashian EL, Guo W, Quach B, Mulholland DJ, Park JW, Tran LM, Kobayashi N, Bianchi-Frias D, Xing Y, Nelson PS, Wu H. HDAC inhibition impedes epithelial-mesenchymal plasticity and suppresses metastatic, castration-resistant prostate cancer. Oncogene. PMID 26640144 DOI: 10.1038/Onc.2015.444 |
0.311 |
|
2015 |
Park SJ, Walser TC, Tran LM, Perdomo C, Wang T, Hong L, Pagano PC, Liclican EL, Larsen JE, Krysan K, Fishbein MC, Minna JD, Lenburg ME, Avrum S, Dubinett S. Abstract B22: The role of e-cigarette exposure on pulmonary epithelial cell transformation Cancer Prevention Research. 8. DOI: 10.1158/1940-6215.Prev-14-B22 |
0.31 |
|
2013 |
Zhang B, Gaiteri C, Bodea LG, Wang Z, McElwee J, Podtelezhnikov AA, Zhang C, Xie T, Tran L, Dobrin R, Fluder E, Clurman B, Melquist S, Narayanan M, Suver C, et al. Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer's disease. Cell. 153: 707-20. PMID 23622250 DOI: 10.1016/J.Cell.2013.03.030 |
0.41 |
|
2013 |
Smith KB, Tran LM, Tam BM, Shurell EM, Li Y, Braas D, Tap WD, Christofk HR, Dry SM, Eilber FC, Wu H. Novel dedifferentiated liposarcoma xenograft models reveal PTEN down-regulation as a malignant signature and response to PI3K pathway inhibition. The American Journal of Pathology. 182: 1400-11. PMID 23416162 DOI: 10.1016/J.Ajpath.2013.01.002 |
0.338 |
|
2012 |
Hill R, Li Y, Tran LM, Dry S, Calvopina JH, Garcia A, Kim C, Wang Y, Donahue TR, Herschman HR, Wu H. Cell intrinsic role of COX-2 in pancreatic cancer development. Molecular Cancer Therapeutics. 11: 2127-37. PMID 22784710 DOI: 10.1158/1535-7163.Mct-12-0342 |
0.304 |
|
2012 |
Tran LM, Chang CJ, Plaisier S, Wu S, Dang J, Mischel PS, Liao JC, Graeber TG, Wu H. Determining PTEN functional status by network component deduced transcription factor activities. Plos One. 7: e31053. PMID 22347425 DOI: 10.1371/Journal.Pone.0031053 |
0.561 |
|
2012 |
Hindoyan AA, Tran L, Godavarthi S, Braas D, Christofk H, Donahue T, Wu H. Abstract B87: Determing molecular and cellular mechanisms of gemcitabine response and relapse using human PDAC xenograft models. Cancer Research. 72. DOI: 10.1158/1538-7445.Panca2012-B87 |
0.316 |
|
2012 |
Zhang B, Dai X, Tran L, Yang X, Friend S, Zhu J. Abstract 4938: A global landscape of transcriptional interactions and regulations in lung cancer Cancer Research. 72: 4938-4938. DOI: 10.1158/1538-7445.Am2012-4938 |
0.398 |
|
2011 |
Mulholland DJ, Tran LM, Li Y, Cai H, Morim A, Wang S, Plaisier S, Garraway IP, Huang J, Graeber TG, Wu H. Cell autonomous role of PTEN in regulating castration-resistant prostate cancer growth. Cancer Cell. 19: 792-804. PMID 21620777 DOI: 10.1016/J.Ccr.2011.05.006 |
0.316 |
|
2011 |
Zhang B, Derry J, Schadt E, Friend S, Zhu J, Dai X, Wang Z, Meng F, Tran L, Zhang Z, Guinney J, Clurman B, Wu G. Abstract PR8: From prediction to prognosis and therapeutics: The power of breast cancer transcriptional networks Cancer Research. 71. DOI: 10.1158/1538-7445.Fbcr11-Pr8 |
0.399 |
|
2010 |
Tran LM, Hyduke DR, Liao JC. Trimming of mammalian transcriptional networks using network component analysis. Bmc Bioinformatics. 11: 511. PMID 20942926 DOI: 10.1186/1471-2105-11-511 |
0.743 |
|
2010 |
Zhang B, Tran L, Jonathan D, Zhu J, Friend S. Abstract LB-248: Towards a global picture of breast cancer: transcriptional networks, pathways, regulators, and validation Cancer Research. 70. DOI: 10.1158/1538-7445.Am10-Lb-248 |
0.426 |
|
2009 |
Dean JT, Tran L, Beaven S, Tontonoz P, Reue K, Dipple KM, Liao JC. Resistance to diet-induced obesity in mice with synthetic glyoxylate shunt. Cell Metabolism. 9: 525-36. PMID 19490907 DOI: 10.1016/J.Cmet.2009.04.008 |
0.696 |
|
2009 |
Wong WW, Tran LM, Liao JC. A hidden square-root boundary between growth rate and biomass yield. Biotechnology and Bioengineering. 102: 73-80. PMID 18683253 DOI: 10.1002/Bit.22046 |
0.47 |
|
2008 |
Tran LM, Rizk ML, Liao JC. Ensemble modeling of metabolic networks. Biophysical Journal. 95: 5606-17. PMID 18820235 DOI: 10.1529/Biophysj.108.135442 |
0.725 |
|
2008 |
Jarboe LR, Hyduke DR, Tran LM, Chou KJ, Liao JC. Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis. The Journal of Biological Chemistry. 283: 5148-57. PMID 18070885 DOI: 10.1074/Jbc.M706018200 |
0.744 |
|
2008 |
Rizk ML, Tran LM, Liao JC. Ensemble modeling of metabolic networks and identification of enzyme targets for metabolic engineering Aiche Annual Meeting, Conference Proceedings. |
0.658 |
|
2007 |
Hyduke DR, Jarboe LR, Tran LM, Chou KJ, Liao JC. Integrated network analysis identifies nitric oxide response networks and dihydroxyacid dehydratase as a crucial target in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 104: 8484-9. PMID 17494765 DOI: 10.1073/Pnas.0610888104 |
0.753 |
|
2006 |
Brynildsen MP, Tran LM, Liao JC. A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics (Oxford, England). 22: 3040-6. PMID 17060361 DOI: 10.1093/Bioinformatics/Btl541 |
0.703 |
|
2006 |
Brynildsen MP, Tran LM, Liao JC. Versatility and connectivity efficiency of bipartite transcription networks. Biophysical Journal. 91: 2749-59. PMID 16815895 DOI: 10.1529/Biophysj.106.082560 |
0.726 |
|
2006 |
Galbraith SJ, Tran LM, Liao JC. Transcriptome network component analysis with limited microarray data. Bioinformatics (Oxford, England). 22: 1886-94. PMID 16766556 DOI: 10.1093/Bioinformatics/Btl279 |
0.589 |
|
2005 |
Kao KC, Tran LM, Liao JC. A global regulatory role of gluconeogenic genes in Escherichia coli revealed by transcriptome network analysis. The Journal of Biological Chemistry. 280: 36079-87. PMID 16141204 DOI: 10.1074/Jbc.M508202200 |
0.69 |
|
2005 |
Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC. gNCA: a framework for determining transcription factor activity based on transcriptome: identifiability and numerical implementation. Metabolic Engineering. 7: 128-41. PMID 15781421 DOI: 10.1016/J.Ymben.2004.12.001 |
0.764 |
|
2005 |
Jarboe LR, Hyduke D, Tran LM, Liao JC. Chemogenomic analysis of signaling pathways for reactive nitrogen oxide species in escherichia coli Aiche Annual Meeting, Conference Proceedings. 10384. |
0.715 |
|
2003 |
Liao JC, Boscolo R, Yang YL, Tran LM, Sabatti C, Roychowdhury VP. Network component analysis: reconstruction of regulatory signals in biological systems. Proceedings of the National Academy of Sciences of the United States of America. 100: 15522-7. PMID 14673099 DOI: 10.1073/Pnas.2136632100 |
0.588 |
|
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