Year |
Citation |
Score |
2024 |
Herpoldt KL, López CL, Sappington I, Pham MN, Srinivasan S, Netland J, Montgomery KS, Roy D, Prossnitz AN, Ellis D, Wargacki AJ, Pepper M, Convertine AJ, Stayton PS, King NP. Macromolecular Cargo Encapsulation via In Vitro Assembly of Two-Component Protein Nanoparticles. Advanced Healthcare Materials. e2303910. PMID 38180445 DOI: 10.1002/adhm.202303910 |
0.339 |
|
2023 |
Khmelinskaia A, Bethel NP, Fatehi F, Antanasijevic A, Borst AJ, Lai SH, Wang JYJ, Mallik BB, Miranda MC, Watkins AM, Ogohara C, Caldwell S, Wu M, Heck AJR, Veesler D, ... ... King NP, et al. Local structural flexibility drives oligomorphism in computationally designed protein assemblies. Biorxiv : the Preprint Server For Biology. PMID 37905007 DOI: 10.1101/2023.10.18.562842 |
0.488 |
|
2023 |
de Haas RJ, Brunette N, Goodson A, Dauparas J, Yi SY, Yang EC, Dowling Q, Nguyen H, Kang A, Bera AK, Sankaran B, de Vries R, Baker D, King NP. Rapid and automated design of two-component protein nanomaterials using ProteinMPNN. Biorxiv : the Preprint Server For Biology. PMID 37577478 DOI: 10.1101/2023.08.04.551935 |
0.536 |
|
2023 |
Baker D, Dowling Q, Park YJ, Gerstenmaier N, Yang E, Wargacki A, Hsia Y, Fries C, Ravichandran R, Walkey C, Burrell A, Veesler D, King N. Hierarchical design of pseudosymmetric protein nanoparticles. Research Square. PMID 37503272 DOI: 10.21203/rs.3.rs-3074553/v1 |
0.539 |
|
2023 |
Dowling QM, Park YJ, Gerstenmaier N, Yang EC, Wargacki A, Hsia Y, Fries CN, Ravichandran R, Walkey C, Burrell A, Veesler D, Baker D, King NP. Hierarchical design of pseudosymmetric protein nanoparticles. Biorxiv : the Preprint Server For Biology. PMID 37398374 DOI: 10.1101/2023.06.16.545393 |
0.539 |
|
2023 |
de Haas RJ, Tas RP, van den Broek D, Zheng C, Nguyen H, Kang A, Bera AK, King NP, Voets IK, de Vries R. De novo designed ice-binding proteins from twist-constrained helices. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220380120. PMID 37364125 DOI: 10.1073/pnas.2220380120 |
0.33 |
|
2023 |
Sheffler W, Yang EC, Dowling Q, Hsia Y, Fries CN, Stanislaw J, Langowski MD, Brandys M, Li Z, Skotheim R, Borst AJ, Khmelinskaia A, King NP, Baker D. Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock. Plos Computational Biology. 19: e1010680. PMID 37216343 DOI: 10.1371/journal.pcbi.1010680 |
0.357 |
|
2023 |
Yang EC, Divine R, Miranda MC, Borst AJ, Sheffler W, Zhang JZ, Decarreau J, Saragovi A, Abedi M, Goldbach N, Ahlrichs M, Dobbins C, Hand A, Cheng S, Lamb M, ... ... King NP, et al. Computational design of non-porous, pH-responsive antibody nanoparticles. Biorxiv : the Preprint Server For Biology. PMID 37131615 DOI: 10.1101/2023.04.17.537263 |
0.343 |
|
2023 |
Lutz ID, Wang S, Norn C, Courbet A, Borst AJ, Zhao YT, Dosey A, Cao L, Xu J, Leaf EM, Treichel C, Litvicov P, Li Z, Goodson AD, Rivera-Sánchez P, ... ... King NP, et al. Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.). 380: 266-273. PMID 37079676 DOI: 10.1126/science.adf6591 |
0.461 |
|
2023 |
Wang JYJ, Khmelinskaia A, Sheffler W, Miranda MC, Antanasijevic A, Borst AJ, Torres SV, Shu C, Hsia Y, Nattermann U, Ellis D, Walkey C, Ahlrichs M, Chan S, Kang A, ... ... King NP, et al. Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proceedings of the National Academy of Sciences of the United States of America. 120: e2214556120. PMID 36888664 DOI: 10.1073/pnas.2214556120 |
0.365 |
|
2022 |
Schoeder CT, Gilchuk P, Sangha AK, Ledwitch KV, Malherbe DC, Zhang X, Binshtein E, Williamson LE, Martina CE, Dong J, Armstrong E, Sutton R, Nargi R, Rodriguez J, Kuzmina N, ... ... King NP, et al. Epitope-focused immunogen design based on the ebolavirus glycoprotein HR2-MPER region. Plos Pathogens. 18: e1010518. PMID 35584193 DOI: 10.1371/journal.ppat.1010518 |
0.3 |
|
2021 |
Khmelinskaia A, Wargacki A, King NP. Structure-based design of novel polyhedral protein nanomaterials. Current Opinion in Microbiology. 61: 51-57. PMID 33784513 DOI: 10.1016/j.mib.2021.03.003 |
0.52 |
|
2021 |
Wargacki AJ, Wörner TP, van de Waterbeemd M, Ellis D, Heck AJR, King NP. Complete and cooperative in vitro assembly of computationally designed self-assembling protein nanomaterials. Nature Communications. 12: 883. PMID 33563988 DOI: 10.1038/s41467-021-21251-y |
0.504 |
|
2020 |
Antanasijevic A, Ueda G, Brouwer PJM, Copps J, Huang D, Allen JD, Cottrell CA, Yasmeen A, Sewall LM, Bontjer I, Ketas TJ, Turner HL, Berndsen ZT, Montefiori DC, Klasse PJ, ... ... King NP, et al. Structural and functional evaluation of de novo-designed, two-component nanoparticle carriers for HIV Env trimer immunogens. Plos Pathogens. 16: e1008665. PMID 32780770 DOI: 10.1371/Journal.Ppat.1008665 |
0.362 |
|
2020 |
Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park YJ, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... ... King NP, et al. Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens. Elife. 9. PMID 32748788 DOI: 10.7554/Elife.57659 |
0.421 |
|
2020 |
Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park Y, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, ... ... King NP, et al. Author response: Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens Elife. DOI: 10.7554/Elife.57659.Sa2 |
0.453 |
|
2020 |
Khmelinskaia A, Borst AJ, Hsia Y, Dowling Q, Veesler D, King NP. Breaking the Symmetry of Protein Assemblies: Structural Flexibility as a De Novo Design Principle Biophysical Journal. 118: 516a-517a. DOI: 10.1016/J.Bpj.2019.11.2844 |
0.607 |
|
2019 |
Cannon KA, Park RU, Boyken SE, Nattermann U, Yi S, Baker D, King NP, Yeates TO. Design and structure of two new protein cages illustrate successes and ongoing challenges in protein engineeringfig. Protein Science : a Publication of the Protein Society. PMID 31840320 DOI: 10.1002/Pro.3802 |
0.746 |
|
2019 |
Brouwer PJM, Antanasijevic A, Berndsen Z, Yasmeen A, Fiala B, Bijl TPL, Bontjer I, Bale JB, Sheffler W, Allen JD, Schorcht A, Burger JA, Camacho M, Ellis D, Cottrell CA, ... ... King NP, et al. Enhancing and shaping the immunogenicity of native-like HIV-1 envelope trimers with a two-component protein nanoparticle. Nature Communications. 10: 4272. PMID 31537780 DOI: 10.1038/S41467-019-12080-1 |
0.334 |
|
2019 |
Boyken SE, Benhaim MA, Busch F, Jia M, Bick MJ, Choi H, Klima JC, Chen Z, Walkey C, Mileant A, Sahasrabuddhe A, Wei KY, Hodge EA, Byron S, Quijano-Rubio A, ... ... King NP, et al. De novo design of tunable, pH-driven conformational changes. Science (New York, N.Y.). 364: 658-664. PMID 31097662 DOI: 10.1126/Science.Aav7897 |
0.459 |
|
2019 |
Bulutoglu B, Macazo FC, Bale J, King N, Baker D, Minteer SD, Banta S. Multimerization of an Alcohol Dehydrogenase by Fusion to a Designed Self-Assembling Protein Results in Enhanced Bioelectrocatalytic Operational Stability. Acs Applied Materials & Interfaces. PMID 31066271 DOI: 10.1021/Acsami.9B04256 |
0.552 |
|
2019 |
Marcandalli J, Fiala B, Ols S, Perotti M, de van der Schueren W, Snijder J, Hodge E, Benhaim M, Ravichandran R, Carter L, Sheffler W, Brunner L, Lawrenz M, Dubois P, Lanzavecchia A, ... ... King NP, et al. Induction of Potent Neutralizing Antibody Responses by a Designed Protein Nanoparticle Vaccine for Respiratory Syncytial Virus. Cell. 176: 1420-1431.e17. PMID 30849373 DOI: 10.1016/J.Cell.2019.01.046 |
0.368 |
|
2019 |
Kanekiyo M, Ellis D, King NP. New Vaccine Design and Delivery Technologies. The Journal of Infectious Diseases. PMID 30715361 DOI: 10.1093/Infdis/Jiy745 |
0.331 |
|
2018 |
Sahasrabuddhe A, Hsia Y, Busch F, Sheffler W, King NP, Baker D, Wysocki VH. Confirmation of intersubunit connectivity and topology of designed protein complexes by native MS. Proceedings of the National Academy of Sciences of the United States of America. PMID 29351988 DOI: 10.1073/Pnas.1713646115 |
0.634 |
|
2017 |
Butterfield GL, Lajoie MJ, Gustafson HH, Sellers DL, Nattermann U, Ellis D, Bale JB, Ke S, Lenz GH, Yehdego A, Ravichandran R, Pun SH, King NP, Baker D. Evolution of a designed protein assembly encapsulating its own RNA genome. Nature. PMID 29236688 DOI: 10.1038/Nature25157 |
0.456 |
|
2016 |
Phippen SW, Stevens CA, Vance TD, King NP, Baker D, Davies PL. Multivalent Display of Antifreeze Proteins by Fusion to Self-Assembling Protein Cages Enhances Ice-Binding Activities. Biochemistry. 55: 6811-6820. PMID 27951652 DOI: 10.1021/Acs.Biochem.6B00864 |
0.419 |
|
2016 |
Votteler J, Ogohara C, Yi S, Hsia Y, Nattermann U, Belnap DM, King NP, Sundquist WI. Designed proteins induce the formation of nanocage-containing extracellular vesicles. Nature. PMID 27919066 DOI: 10.1038/Nature20607 |
0.601 |
|
2016 |
Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D. Corrigendum: Design of a hyperstable 60-subunit protein icosahedron. Nature. PMID 27760110 DOI: 10.1038/Nature20108 |
0.545 |
|
2016 |
Bale JB, Gonen S, Liu Y, Sheffler W, Ellis D, Thomas C, Cascio D, Yeates TO, Gonen T, King NP, Baker D. Accurate design of megadalton-scale two-component icosahedral protein complexes. Science (New York, N.Y.). 353: 389-394. PMID 27463675 DOI: 10.1126/Science.Aaf8818 |
0.674 |
|
2016 |
Hsia Y, Bale JB, Gonen S, Shi D, Sheffler W, Fong KK, Nattermann U, Xu C, Huang PS, Ravichandran R, Yi S, Davis TN, Gonen T, King NP, Baker D. Design of a hyperstable 60-subunit protein icosahedron. Nature. PMID 27309817 DOI: 10.1038/Nature18010 |
0.62 |
|
2016 |
Heinze K, Sasaki E, King NP, Baker D, Hilvert D, Wuite GJ, Roos WH. Protein Nanocontainers from Nonviral Origin: Testing the Mechanics of Artificial and Natural Protein Cages by AFM. The Journal of Physical Chemistry. B. PMID 27187612 DOI: 10.1021/Acs.Jpcb.6B01464 |
0.431 |
|
2016 |
Lajoie MJ, Butterfield G, Gray E, DaPron K, Stetson D, Baker D, King N. Abstract B073: Protein nanoparticles for controllable T cell activation Cancer Immunology Research. 4. DOI: 10.1158/2326-6066.Imm2016-B073 |
0.438 |
|
2015 |
Bale JB, Park RU, Liu Y, Gonen S, Gonen T, Cascio D, King NP, Yeates TO, Baker D. Structure of a designed tetrahedral protein assembly variant engineered to have improved soluble expression. Protein Science : a Publication of the Protein Society. PMID 26174163 DOI: 10.1002/Pro.2748 |
0.672 |
|
2015 |
MacKenzie K, Slater G, King N, Byrne N. The Measurement and Interpretation of Dietary Protein Distribution During a Rugby Pre-season. International Journal of Sport Nutrition and Exercise Metabolism. PMID 25675306 DOI: 10.1123/ijsnem.2014-0168 |
0.337 |
|
2015 |
King NP, Newton P, Schuelein R, Brown DL, Petru M, Zarsky V, Dolezal P, Luo L, Bugarcic A, Stanley AC, Murray RZ, Collins BM, Teasdale RD, Hartland EL, Stow JL. Soluble NSF attachment protein receptor molecular mimicry by a Legionella pneumophila Dot/Icm effector. Cellular Microbiology. 17: 767-84. PMID 25488819 DOI: 10.1111/cmi.12405 |
0.308 |
|
2014 |
King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. Accurate design of co-assembling multi-component protein nanomaterials. Nature. 510: 103-8. PMID 24870237 DOI: 10.1038/Nature13404 |
0.719 |
|
2014 |
Luo L, King NP, Yeo JC, Jones A, Stow JL. Single-step protease cleavage elution for identification of protein-protein interactions from GST pull-down and mass spectrometry. Proteomics. 14: 19-23. PMID 24259493 DOI: 10.1002/Pmic.201300315 |
0.494 |
|
2014 |
Lai Y, King NP, Sheffler W, McNamara DE, Bale JB, Baker D, Yeates TO. Symmetry-Based Design and Structure of Self-Assembling Protein Cages and Nanomaterials Biophysical Journal. 106: 445a. DOI: 10.1016/J.Bpj.2013.11.2516 |
0.702 |
|
2013 |
King NP, Lai YT. Practical approaches to designing novel protein assemblies. Current Opinion in Structural Biology. 23: 632-8. PMID 23827813 DOI: 10.1016/J.Sbi.2013.06.002 |
0.554 |
|
2013 |
Shepherd M, Heras B, Achard ME, King GJ, Argente MP, Kurth F, Taylor SL, Howard MJ, King NP, Schembri MA, McEwan AG. Structural and functional characterization of ScsC, a periplasmic thioredoxin-like protein from Salmonella enterica serovar Typhimurium. Antioxidants & Redox Signaling. 19: 1494-506. PMID 23642141 DOI: 10.1089/ars.2012.4939 |
0.492 |
|
2012 |
Lai YT, King NP, Yeates TO. Principles for designing ordered protein assemblies. Trends in Cell Biology. 22: 653-61. PMID 22975357 DOI: 10.1016/J.Tcb.2012.08.004 |
0.714 |
|
2012 |
King NP, Sheffler W, Sawaya MR, Vollmar BS, Sumida JP, André I, Gonen T, Yeates TO, Baker D. Computational design of self-assembling protein nanomaterials with atomic level accuracy. Science (New York, N.Y.). 336: 1171-4. PMID 22654060 DOI: 10.1126/Science.1219364 |
0.718 |
|
2011 |
Sayre TC, Lee TM, King NP, Yeates TO. Protein stabilization in a highly knotted protein polymer. Protein Engineering, Design & Selection : Peds. 24: 627-30. PMID 21669955 DOI: 10.1093/Protein/Gzr024 |
0.675 |
|
2010 |
King NP, Jacobitz AW, Sawaya MR, Goldschmidt L, Yeates TO. Structure and folding of a designed knotted protein. Proceedings of the National Academy of Sciences of the United States of America. 107: 20732-7. PMID 21068371 DOI: 10.1073/Pnas.1007602107 |
0.745 |
|
2008 |
King NP, Lee TM, Sawaya MR, Cascio D, Yeates TO. Structures and functional implications of an AMP-binding cystathionine beta-synthase domain protein from a hyperthermophilic archaeon. Journal of Molecular Biology. 380: 181-92. PMID 18513746 DOI: 10.1016/J.Jmb.2008.04.073 |
0.689 |
|
2007 |
Yeates TO, Norcross TS, King NP. Knotted and topologically complex proteins as models for studying folding and stability. Current Opinion in Chemical Biology. 11: 595-603. PMID 17967433 DOI: 10.1016/J.Cbpa.2007.10.002 |
0.612 |
|
2007 |
King NP, Yeates EO, Yeates TO. Identification of rare slipknots in proteins and their implications for stability and folding. Journal of Molecular Biology. 373: 153-66. PMID 17764691 DOI: 10.1016/J.Jmb.2007.07.042 |
0.742 |
|
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