Jianing Li, Ph.D. - Publications

2011 Chemistry Columbia University, New York, NY 
Computational Chemistry

40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Van Oort CM, Ferrell JB, Remington JM, Wshah S, Li J. AMPGAN v2: Machine Learning-Guided Design of Antimicrobial Peptides. Journal of Chemical Information and Modeling. PMID 33787250 DOI: 10.1021/acs.jcim.0c01441  0.32
2021 Wu J, Ge T, Zhang N, Li J, Tian W, Sun Y. Posterior fixation can further improve the segmental alignment of lumbar degenerative spondylolisthesis with oblique lumbar interbody fusion. Bmc Musculoskeletal Disorders. 22: 218. PMID 33622295 DOI: 10.1186/s12891-021-04086-y  0.36
2021 Zhao X, Shahul Hameed UF, Kharchenko V, Liao C, Huser F, Remington JM, Radhakrishnan AK, Jaremko M, Jaremko Ł, Arold ST, Li J. Molecular basis for the adaptive evolution of environment sensing by H-NS proteins. Elife. 10. PMID 33410747 DOI: 10.7554/eLife.57467  0.36
2020 An Y, Li J, Liu Y, Fan M. Ormosanine improves neuronal functions in spinal cord-injured rats by blocking peroxynitrite/calpain activity. Translational Neuroscience. 11: 182-191. PMID 33335756 DOI: 10.1515/tnsci-2020-0106  0.36
2020 Remington JM, Liao C, Sharafi M, Ste Marie EJ, Ferrell JB, Hondal RJ, Wargo MJ, Schneebeli ST, Li J. Aggregation State of Synergistic Antimicrobial Peptides. The Journal of Physical Chemistry Letters. 9501-9506. PMID 33108730 DOI: 10.1021/acs.jpclett.0c02094  0.36
2020 Sharafi M, McKay KT, Ivancic M, McCarthy DR, Dudkina N, Murphy KE, Rajappan SC, Campbell JP, Shen Y, Badireddy AR, Li J, Schneebeli ST. Size-selective Catalytic Polymer Acylation with a Molecular Tetrahedron. Chem. 6: 1469-1494. PMID 32728651 DOI: 10.1016/j.chempr.2020.05.011  0.36
2020 An Y, Li J, Liu Y, Fan M. Neuroprotective effect of novel celecoxib derivatives against spinal cord injury via attenuation of COX-2, oxidative stress, apoptosisand inflammation. Bioorganic Chemistry. 101: 104044. PMID 32629287 DOI: 10.1016/j.bioorg.2020.104044  0.36
2020 An Y, Li J, Yuan Q, Fan M. MicroRNA-466c-3p exerts protective effect on neuronal apoptosis and improves functional recovery post spinal cord injury via mitochondrial apoptotic pathway. Amb Express. 10: 113. PMID 32542430 DOI: 10.1186/s13568-020-01033-3  0.36
2020 Rajappan SC, McCarthy DR, Campbell JP, Ferrell JB, Sharafi M, Ambrozaite O, Li J, Schneebeli ST. Selective Monofunctionalization Enabled by Reaction History-Dependent Communication in Catalytic Rotaxanes. Angewandte Chemie (International Ed. in English). PMID 32525593 DOI: 10.1002/anie.202006305  0.36
2020 An Y, Li J, Liu Y, Fan M, Tian W. Protective effect of D-pinitol on the experimental spinal cord injury in rats. Metabolic Brain Disease. PMID 31997266 DOI: 10.1007/s11011-020-00537-y  0.36
2019 Liao C, de Molliens MP, Schneebeli ST, Brewer M, Song G, Chatenet D, Braas KM, May V, Li J. Targeting the PAC1 Receptor for Neurological and Metabolic Disorders. Current Topics in Medicinal Chemistry. PMID 31284862 DOI: 10.2174/1568026619666190709092647  0.36
2019 Yuan X, Dai X, Liu L, Hsue C, Miller JD, Fang Z, Li J, Feng J, Huang Y, Liu C, Shen J, Chen T, Liu Y, Mordes J, Lou Q. Comparing the Effects of Six-Month Aerobic Exercise and Resistance Training on Metabolic Control and Beta Cell Function in Chinese Patients with Prediabetes: A multicenter randomized controlled trial. Journal of Diabetes. PMID 31141300 DOI: 10.1111/1753-0407.12955  0.36
2019 Liao C, May V, Li J. Assessment of Conformational State Transitions of Class B GPCRs Using Molecular Dynamics. Methods in Molecular Biology (Clifton, N.J.). 1947: 3-19. PMID 30969408 DOI: 10.1007/978-1-4939-9121-1_1  0.36
2019 Zhao X, Liao C, Ma YT, Ferrell JB, Schneebeli ST, Li J. A Top-Down Multiscale Approach to Simulate Peptide Self-Assembly from Monomers. Journal of Chemical Theory and Computation. PMID 30677300 DOI: 10.1021/acs.jctc.8b01025  0.36
2018 Shahul Hameed UF, Liao C, Radhakrishnan AK, Huser F, Aljedani SS, Zhao X, Momin AA, Melo FA, Guo X, Brooks C, Li Y, Cui X, Gao X, Ladbury JE, Jaremko L, ... ... Li J, et al. H-NS uses an autoinhibitory conformational switch for environment-controlled gene silencing. Nucleic Acids Research. PMID 30597093 DOI: 10.1093/nar/gky1299  0.36
2018 Zhao S, Chen H, Ding B, Li J, Lv F, Han K, Zhou D, Yu B, Yu Y, Zhang W. Construction of a transcription factor‑long non‑coding RNA‑microRNA network for the identification of key regulators in lung adenocarcinoma and lung squamous cell carcinoma. Molecular Medicine Reports. PMID 30569133 DOI: 10.3892/mmr.2018.9769  0.64
2018 Campbell JP, Rajappan SC, Jaynes TJ, Sharafi M, Ma YT, Li J, Schneebeli ST. Enantioselective Electrophilic Aromatic Nitration - A Chiral Auxiliary Approach. Angewandte Chemie (International Ed. in English). PMID 30402995 DOI: 10.1002/anie.201811517  0.36
2018 Heppner DE, Dustin CM, Liao C, Hristova M, Veith C, Little AC, Ahlers BA, White SL, Deng B, Lam YW, Li J, van der Vliet A. Direct cysteine sulfenylation drives activation of the Src kinase. Nature Communications. 9: 4522. PMID 30375386 DOI: 10.1038/s41467-018-06790-1  0.36
2018 Trinh T, Saliba D, Liao C, de Rochambeau D, Prinzen AL, Li J, Sleiman HF. "Printing" DNA Strand Patterns on Small Molecules with Control of Valency, Directionality and Sequence. Angewandte Chemie (International Ed. in English). PMID 30290048 DOI: 10.1002/anie.201809251  0.36
2018 Liao C, May V, Li J. PAC1 Receptors: Shapeshifters in Motion. Journal of Molecular Neuroscience : Mn. PMID 30074173 DOI: 10.1007/s12031-018-1132-0  0.36
2018 Trinh T, Liao C, Toader V, Barłóg M, Bazzi HS, Li J, Sleiman HF. DNA-imprinted polymer nanoparticles with monodispersity and prescribed DNA-strand patterns. Nature Chemistry. 10: 184-192. PMID 29359762 DOI: 10.1038/nchem.2893  0.36
2017 Liu J, Tian Z, Zhou N, Liu X, Liao C, Lei B, Li J, Zhang S, Chen H. Targeting the apoptotic Mcl-1-PUMA interface with a dual-acting compound. Oncotarget. 8: 54236-54242. PMID 28903337 DOI: 10.18632/oncotarget.17294  0.36
2017 Liao C, Zhao X, Brewer M, May V, Li J. Conformational Transitions of the Pituitary Adenylate Cyclase-Activating Polypeptide Receptor, a Human Class B GPCR. Scientific Reports. 7: 5427. PMID 28710390 DOI: 10.1038/s41598-017-05815-x  0.36
2017 Shelley MY, Selvan ME, Zhao J, Babin V, Liao C, Li J, Shelley JC. A new mixed all-atom/coarse-grained model: application to melittin aggregation in aqueous solution. Journal of Chemical Theory and Computation. PMID 28636825 DOI: 10.1021/acs.jctc.7b00071  0.36
2017 Sharafi M, Campbell JP, Rajappan SC, Dudkina N, Gray DL, Woods TJ, Li J, Schneebeli ST. Crystal-Packing-Driven Enrichment of Atropoisomers. Angewandte Chemie (International Ed. in English). PMID 28510353 DOI: 10.1002/anie.201701876  0.36
2017 Liu J, Tian Z, Zhou N, Liu X, Liao C, Lei B, Li J, Zhang S, Chen H. Targeting the apoptotic Mcl-1-PUMA interface with a dual-acting compound. Oncotarget. PMID 28493826 DOI: 10.18632/oncotarget.17294  0.36
2016 Liao C, Zhang Z, Kale J, Andrews DW, Lin J, Li J. Conformational Heterogeneity of Bax Helix 9 Dimer for Apoptotic Pore Formation. Scientific Reports. 6: 29502. PMID 27381287 DOI: 10.1038/srep29502  0.36
2016 Tian W, Zeng C, An Y, Wang C, Liu Y, Li J. Accuracy and postoperative assessment of pedicle screw placement during scoliosis surgery with computer-assisted navigation: a meta-analysis. The International Journal of Medical Robotics + Computer Assisted Surgery : Mrcas. PMID 26957362 DOI: 10.1002/rcs.1732  0.36
2016 Sharafi M, Weinert ZJ, Cohen IM, Liao C, Ivancic M, Li J, Schneebeli ST. Controlled Self-Assembly inside C-Shaped Polyaromatic Strips Synlett. 27: 2145-2149. DOI: 10.1055/s-0035-1561479  0.36
2015 Zhang Z, Subramaniam S, Kale J, Liao C, Huang B, Brahmbhatt H, Condon SG, Lapolla SM, Hays FA, Ding J, He F, Zhang XC, Li J, Senes A, Andrews DW, et al. BH3-in-groove dimerization initiates and helix 9 dimerization expands Bax pore assembly in membranes. The Embo Journal. PMID 26702098 DOI: 10.15252/embj.201591552  0.36
2015 Liu X, Weinert ZJ, Sharafi M, Liao C, Li J, Schneebeli ST. Regulating Molecular Recognition with C-Shaped Strips Attained by Chirality-Assisted Synthesis. Angewandte Chemie (International Ed. in English). 54: 12772-6. PMID 26349630 DOI: 10.1002/anie.201506793  0.36
2015 Liao C, Esai Selvan M, Zhao J, Slimovitch JL, Schneebeli ST, Shelley M, Shelley JC, Li J. Melittin Aggregation in Aqueous Solutions: Insight from Molecular Dynamics Simulations. The Journal of Physical Chemistry. B. PMID 26208115 DOI: 10.1021/acs.jpcb.5b03254  0.36
2015 Liu X, Shi H, Liu B, Li J, Liu Y, Yu B. miR-330-3p controls cell proliferation by targeting early growth response 2 in non-small-cell lung cancer. Acta Biochimica Et Biophysica Sinica. 47: 431-40. PMID 25935837 DOI: 10.1093/abbs/gmv032  0.36
2014 Bruns CJ, Li J, Frasconi M, Schneebeli ST, Iehl J, Jacquot de Rouville HP, Stupp SI, Voth GA, Stoddart JF. An electrochemically and thermally switchable donor-acceptor [c2]daisy chain rotaxane. Angewandte Chemie (International Ed. in English). 53: 1953-8. PMID 24505012 DOI: 10.1002/anie.201308498  0.36
2013 Li J, Jonsson AL, Beuming T, Shelley JC, Voth GA. Ligand-dependent activation and deactivation of the human adenosine A(2A) receptor. Journal of the American Chemical Society. 135: 8749-59. PMID 23678995 DOI: 10.1021/ja404391q  0.36
2011 Li J, Schneebeli ST, Bylund J, Farid R, Friesner RA. IDSite: An accurate approach to predict P450-mediated drug metabolism. Journal of Chemical Theory and Computation. 7: 3829-3845. PMID 22247702 DOI: 10.1021/ct200462q  0.64
2011 Zhao S, Zhu K, Li J, Friesner RA. Progress in super long loop prediction. Proteins. 79: 2920-35. PMID 21905115 DOI: 10.1002/prot.23129  0.64
2011 Li J, Abel R, Zhu K, Cao Y, Zhao S, Friesner RA. The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling. Proteins. 79: 2794-812. PMID 21905107 DOI: 10.1002/prot.23106  0.64
2011 Bochevarov AD, Li J, Song WJ, Friesner RA, Lippard SJ. Insights into the different dioxygen activation pathways of methane and toluene monooxygenase hydroxylases. Journal of the American Chemical Society. 133: 7384-97. PMID 21517016 DOI: 10.1021/ja110287y  0.64
2009 Zhou G, Li J, Chen Y, Zhao B, Cao Y, Duan X, Cao Y. Determination of reactive oxygen species generated in laccase catalyzed oxidation of wood fibers from Chinese fir (Cunninghamia lanceolata) by electron spin resonance spectrometry. Bioresource Technology. 100: 505-8. PMID 18650080 DOI: 10.1016/j.biortech.2008.06.010  0.64
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