Debraj GuhaThakurta, Ph.D. - Publications

2000 Johns Hopkins University, Baltimore, MD 
RNA folding

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Small EJ, Lance RS, Gardner TA, Karsh LI, Fong L, McCoy C, DeVries T, Sheikh NA, GuhaThakurta D, Chang N, Redfern CH, Shore ND. A Randomized Phase II Trial of Sipuleucel-T with Concurrent versus Sequential Abiraterone Acetate plus Prednisone in Metastatic Castration-Resistant Prostate Cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 25925891 DOI: 10.1158/1078-0432.CCR-15-0079  1
2013 Guhathakurta D, Sheikh NA, Meagher TC, Letarte S, Trager JB. Applications of systems biology in cancer immunotherapy: From target discovery to biomarkers of clinical outcome Expert Review of Clinical Pharmacology. 6: 387-401. PMID 23927667 DOI: 10.1586/17512433.2013.811814  1
2013 Dufour A, Palermo G, Zellmeier E, Mellert G, Duchateau-Nguyen G, Schneider S, Benthaus T, Kakadia PM, Spiekermann K, Hiddemann W, Braess J, Truong S, Patten N, Wu L, Lohmann S, ... ... GuhaThakurta D, et al. Inactivation of TP53 correlates with disease progression and low miR-34a expression in previously treated chronic lymphocytic leukemia patients. Blood. 121: 3650-7. PMID 23525797 DOI: 10.1182/blood-2012-10-458695  1
2010 Derry JM, Zhong H, Molony C, MacNeil D, Guhathakurta D, Zhang B, Mudgett J, Small K, El Fertak L, Guimond A, Selloum M, Zhao W, Champy MF, Monassier L, Vogt T, et al. Identification of genes and networks driving cardiovascular and metabolic phenotypes in a mouse F2 intercross. Plos One. 5: e14319. PMID 21179467 DOI: 10.1371/journal.pone.0014319  1
2010 O'Brien C, Wallin JJ, Sampath D, GuhaThakurta D, Savage H, Punnoose EA, Guan J, Berry L, Prior WW, Amler LC, Belvin M, Friedman LS, Lackner MR. Predictive biomarkers of sensitivity to the phosphatidylinositol 3' kinase inhibitor GDC-0941 in breast cancer preclinical models. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 16: 3670-83. PMID 20453058 DOI: 10.1158/1078-0432.CCR-09-2828  1
2010 Arshadi N, Bajcsy R, Brawerman A, Che D, Chen C, Clincy VA, Daimi K, Deng Y, Fathi M, Gravvanis GA, Guhathakurta D, Hashemi R, He H, Khemaissia S, Lin WD, et al. Preface Advances in Experimental Medicine and Biology. 680: v-vi.  1
2009 van Nas A, Guhathakurta D, Wang SS, Yehya N, Horvath S, Zhang B, Ingram-Drake L, Chaudhuri G, Schadt EE, Drake TA, Arnold AP, Lusis AJ. Elucidating the role of gonadal hormones in sexually dimorphic gene coexpression networks. Endocrinology. 150: 1235-49. PMID 18974276 DOI: 10.1210/en.2008-0563  1
2008 Su WL, Modrek B, GuhaThakurta D, Edwards S, Shah JK, Kulkarni AV, Russell A, Schadt EE, Johnson JM, Castle JC. Exon and junction microarrays detect widespread mouse strain- and sex-bias expression differences. Bmc Genomics. 9: 273. PMID 18533039 DOI: 10.1186/1471-2164-9-273  1
2008 Schadt EE, Molony C, Chudin E, Hao K, Yang X, Lum PY, Kasarskis A, Zhang B, Wang S, Suver C, Zhu J, Millstein J, Sieberts S, Lamb J, GuhaThakurta D, et al. Mapping the genetic architecture of gene expression in human liver. Plos Biology. 6: e107. PMID 18462017 DOI: 10.1371/journal.pbio.0060107  1
2006 GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE. Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations. Bmc Genomics. 7: 235. PMID 16978413 DOI: 10.1186/1471-2164-7-235  1
2006 GuhaThakurta D. Computational identification of transcriptional regulatory elements in DNA sequence. Nucleic Acids Research. 34: 3585-98. PMID 16855295 DOI: 10.1093/nar/gkl372  1
2005 Dunstan MS, Guhathakurta D, Draper DE, Conn GL. Coevolution of protein and RNA structures within a highly conserved ribosomal domain. Chemistry & Biology. 12: 201-6. PMID 15734647 DOI: 10.1016/j.chembiol.2004.11.019  1
2004 GuhaThakurta D, Schriefer LA, Waterston RH, Stormo GD. Novel transcription regulatory elements in Caenorhabditis elegans muscle genes Genome Research. 14: 2457-2468. PMID 15574824 DOI: 10.1101/gr.2961104  1
2004 Schadt EE, Edwards SW, GuhaThakurta D, Holder D, Ying L, Svetnik V, Leonardson A, Hart KW, Russell A, Li G, Cavet G, Castle J, McDonagh P, Kan Z, Chen R, et al. A comprehensive transcript index of the human genome generated using microarrays and computational approaches. Genome Biology. 5: R73. PMID 15461792 DOI: 10.1186/gb-2004-5-10-r73  1
2004 Zhu J, Lum PY, Lamb J, GuhaThakurta D, Edwards SW, Thieringer R, Berger JP, Wu MS, Thompson J, Sachs AB, Schadt EE. An integrative genomics approach to the reconstruction of gene networks in segregating populations. Cytogenetic and Genome Research. 105: 363-74. PMID 15237224 DOI: 10.1159/000078209  1
2002 Pramila T, Miles S, GuhaThakurta D, Jemiolo D, Breeden LL. Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle. Genes & Development. 16: 3034-45. PMID 12464633 DOI: 10.1101/gad.1034302  1
2002 Guhathakurta D, Schriefer LA, Hresko MC, Waterston RH, Stormo GD. Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 11928496  1
2001 GuhaThakurta D, Stormo GD. Identifying target sites for cooperatively binding factors. Bioinformatics (Oxford, England). 17: 608-21. PMID 11448879  1
2000 GuhaThakurta D, Draper DE. Contributions of basic residues to ribosomal protein L11 recognition of RNA. Journal of Molecular Biology. 295: 569-80. PMID 10623547 DOI: 10.1006/jmbi.1999.3372  1
1999 GuhaThakurta D, Draper DE. Protein-RNA sequence covariation in a ribosomal protein-rRNA complex. Biochemistry. 38: 3633-40. PMID 10090750 DOI: 10.1021/bi9826411  1
1997 Xing Y, Guha Thakurta D, Draper DE. The RNA binding domain of ribosomal protein L11 is structurally similar to homeodomains. Nature Structural Biology. 4: 24-7. PMID 8989317 DOI: 10.1038/nsb0197-24  1
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