Ramkrishna Adhikary, Ph.D. - Publications

2010 Chemistry Iowa State University, Ames, IA, United States 
Physical, Biophysical, Analytical Chemistry

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Fischer EC, Hashimoto K, Zhang Y, Feldman AW, Dien VT, Karadeema RJ, Adhikary R, Ledbetter MP, Krishnamurthy R, Romesberg FE. New codons for efficient production of unnatural proteins in a semisynthetic organism. Nature Chemical Biology. PMID 32251411 DOI: 10.1038/s41589-020-0507-z  0.96
2020 Adhikary R, Dawson PE. In Situ Neutralization Protocols for Boc-SPPS. Methods in Molecular Biology (Clifton, N.J.). 2103: 29-40. PMID 31879917 DOI: 10.1007/978-1-0716-0227-0_3  0.88
2019 Adhikary R, Zimmermann J, Stanfield RL, Wilson IA, Yu W, Oda M, Romesberg FE. Structure and Dynamics of Stacking Interactions in an Antibody Binding Site. Biochemistry. PMID 31243995 DOI: 10.1021/acs.biochem.9b00119  0.96
2018 Yeh CH, Walsh SI, Craney A, Tabor MG, Voica AF, Adhikary R, Morris SE, Romesberg FE. Optimization of a β-Lactam Scaffold for Antibacterial Activity via the Inhibition of Bacterial Type I Signal Peptidase. Acs Medicinal Chemistry Letters. 9: 376-380. PMID 29670704 DOI: 10.1021/acsmedchemlett.8b00064  0.96
2017 Holcomb M, Adhikary R, Zimmermann J, Romesberg FE. Topological Evidence of Previously Overlooked Ni+1-H···Ni H-Bonds and Their Contribution to Protein Structure and Stability. The Journal of Physical Chemistry. A. PMID 29260873 DOI: 10.1021/acs.jpca.7b11013  0.96
2017 Adhikary R, Tan YX, Liu J, Zimmermann J, Holcomb M, Yvellez C, Dawson PE, Romesberg FE. Conformational Heterogeneity and DNA Recognition by the Morphogen Bicoid. Biochemistry. PMID 28547993 DOI: 10.1021/acs.biochem.7b00255  0.96
2017 Adhikary R, Zimmermann J, Romesberg FE. Transparent Window Vibrational Probes for the Characterization of Proteins With High Structural and Temporal Resolution. Chemical Reviews. PMID 28106985 DOI: 10.1021/acs.chemrev.6b00625  0.96
2016 Chen T, Hongdilokkul N, Liu Z, Adhikary R, Tsuen SS, Romesberg FE. Evolution of thermophilic DNA polymerases for the recognition and amplification of C2'-modified DNA. Nature Chemistry. 8: 556-562. PMID 27219699 DOI: 10.1038/nchem.2493  0.96
2015 Adhikary R, Zimmermann J, Dawson PE, Romesberg FE. Temperature Dependence of CN and SCN IR Absorptions Facilitates Their Interpretation and Use as Probes of Proteins. Analytical Chemistry. PMID 26523838 DOI: 10.1021/acs.analchem.5b03437  0.88
2015 Craney A, Dix MM, Adhikary R, Cravatt BF, Romesberg FE. An Alternative Terminal Step of the General Secretory Pathway in Staphylococcus aureus. Mbio. 6. PMID 26286693 DOI: 10.1128/mBio.01178-15  0.88
2015 Adhikary R, Yu W, Oda M, Walker RC, Chen T, Stanfield RL, Wilson IA, Zimmermann J, Romesberg FE. Adaptive mutations alter antibody structure and dynamics during affinity maturation. Biochemistry. 54: 2085-93. PMID 25756188 DOI: 10.1021/bi501417q  0.88
2014 Adhikary R, Zimmermann J, Liu J, Forrest RP, Janicki TD, Dawson PE, Corcelli SA, Romesberg FE. Evidence of an unusual N-H···N hydrogen bond in proteins. Journal of the American Chemical Society. 136: 13474-7. PMID 25226114 DOI: 10.1021/ja503107h  0.88
2014 Adhikary R, Zimmermann J, Dawson PE, Romesberg FE. IR probes of protein microenvironments: utility and potential for perturbation. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 15: 849-53. PMID 24519759 DOI: 10.1002/cphc.201400017  0.88
2013 Li Z, Lavergne T, Malyshev DA, Zimmermann J, Adhikary R, Dhami K, Ordoukhanian P, Sun Z, Xiang J, Romesberg FE. Site-specifically arraying small molecules or proteins on DNA using an expanded genetic alphabet. Chemistry (Weinheim An Der Bergstrasse, Germany). 19: 14205-9. PMID 24026962 DOI: 10.1002/chem.201302496  0.96
2013 Adhikary R, Zimmermann J, Liu J, Dawson PE, Romesberg FE. Experimental characterization of electrostatic and conformational heterogeneity in an SH3 domain. The Journal of Physical Chemistry. B. 117: 13082-9. PMID 23834285 DOI: 10.1021/jp402772x  0.88
2012 Adhikary R, Yu W, Oda M, Zimmermann J, Romesberg FE. Protein dynamics and the diversity of an antibody response. The Journal of Biological Chemistry. 287: 27139-47. PMID 22685303 DOI: 10.1074/jbc.M112.372698  0.88
2011 Adhikary R, Barnes CA, Trampel RL, Wallace SJ, Kee TW, Petrich JW. Photoinduced trans-to-cis isomerization of cyclocurcumin. The Journal of Physical Chemistry. B. 115: 10707-14. PMID 21815641 DOI: 10.1021/jp200080s  0.88
2011 Zhao L, Pang X, Adhikary R, Petrich JW, Jeffries-El M, Lin Z. Organic-inorganic nanocomposites by placing conjugated polymers in intimate contact with quantum rods. Advanced Materials (Deerfield Beach, Fla.). 23: 2844-9. PMID 21590817 DOI: 10.1002/adma.201100923  0.88
2011 Zhao L, Pang X, Adhikary R, Petrich JW, Lin Z. Semiconductor anisotropic nanocomposites obtained by directly coupling conjugated polymers with quantum rods. Angewandte Chemie (International Ed. in English). 50: 3958-62. PMID 21442709 DOI: 10.1002/anie.201100200  0.88
2011 Bose S, Adhikary R, Barnes CA, Fulton DB, Hargrove MS, Song X, Petrich JW. Comparison of the dielectric response obtained from fluorescence upconversion measurements and molecular dynamics simulations for coumarin 153-apomyoglobin complexes and structural analysis of the complexes by NMR and fluorescence methods. The Journal of Physical Chemistry. A. 115: 3630-41. PMID 20446696 DOI: 10.1021/jp1008225  0.88
2011 Kee TW, Adhikary R, Carlson PJ, Mukherjee P, Petrich JW. Femtosecond fluorescence upconversion investigations on the excited-state photophysics of curcumin Australian Journal of Chemistry. 64: 23-30. DOI: 10.1071/CH10417  0.88
2010 Adhikary R, Mukherjee P, Krishnamoorthy G, Kunkle RA, Casey TA, Rasmussen MA, Petrich JW. Fluorescence spectroscopy of the retina for diagnosis of transmissible spongiform encephalopathies. Analytical Chemistry. 82: 4097-101. PMID 20411920 DOI: 10.1021/ac100179u  0.88
2010 Adhikary R, Carlson PJ, Kee TW, Petrich JW. Excited-state intramolecular hydrogen atom transfer of curcumin in surfactant micelles. The Journal of Physical Chemistry. B. 114: 2997-3004. PMID 20136104 DOI: 10.1021/jp9101527  0.88
2010 Adhikary R, Bose S, Casey TA, Gapsch A, Rasmussen MA, Petrich JW. Applications of fluorescence spectroscopy to problems of food safety: Detection of fecal contamination and of the presence of central nervous system tissue and diagnosis of neurological disease Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7576. DOI: 10.1117/12.841829  0.88
2009 Adhikary R, Barnes CA, Petrich JW. Solvation dynamics of the fluorescent probe PRODAN in heterogeneous environments: contributions from the locally excited and charge-transferred states. The Journal of Physical Chemistry. B. 113: 11999-2004. PMID 19708713 DOI: 10.1021/jp905139n  0.88
2009 Adhikary R, Schönenbrücher H, Rasmussen MA, Casey TA, Hamir AN, Kehrli ME, Richt JA, Petrich JW. A comparison of the fluorescence spectra of murine and bovine central nervous system and other tissues. Photochemistry and Photobiology. 85: 1322-6. PMID 19656327 DOI: 10.1111/j.1751-1097.2009.00593.x  0.88
2009 Bose S, Adhikary R, Mukherjee P, Song X, Petrich JW. Considerations for the construction of the solvation correlation function and implications for the interpretation of dielectric relaxation in proteins. The Journal of Physical Chemistry. B. 113: 11061-8. PMID 19445455 DOI: 10.1021/jp9004345  0.88
2009 Adhikary R, Mukherjee P, Kee TW, Petrich JW. Excited-state intramolecular hydrogen atom transfer and solvation dynamics of the medicinal pigment curcumin. The Journal of Physical Chemistry. B. 113: 5255-61. PMID 19317434 DOI: 10.1021/jp901234z  0.88
2009 Mukherjee P, Bose S, Hurd AA, Adhikary R, Schönenbrücher H, Hamir AN, Richt JA, Casey TA, Rasmussen MA, Petrich JW. Monitoring the accumulation of lipofuscin in aging murine eyes by fluorescence spectroscopy. Photochemistry and Photobiology. 85: 234-8. PMID 18764899 DOI: 10.1111/j.1751-1097.2008.00425.x  0.88
2008 Schönenbrücher H, Adhikary R, Mukherjee P, Casey TA, Rasmussen MA, Maistrovich FD, Hamir AN, Kehrli ME, Richt JA, Petrich JW. Fluorescence-based method, exploiting lipofuscin, for real-time detection of central nervous system tissues on bovine carcasses. Journal of Agricultural and Food Chemistry. 56: 6220-6. PMID 18620407 DOI: 10.1021/jf0734368  0.88
2008 Adhikary R, Bose S, Mukherjee P, Thite A, Kraus GA, Wijeratne AB, Sharma PS, Armstrong DW, Petrich JW. Influence of chiral ionic liquids on the excited-state properties of naproxen analogs. The Journal of Physical Chemistry. B. 112: 7555-9. PMID 18543868 DOI: 10.1021/jp711508b  0.88
2008 Mukherjee P, Adhikary R, Halder M, Petrich JW, Miskovsky P. Accumulation and interaction of hypericin in low-density lipoprotein--a photophysical study. Photochemistry and Photobiology. 84: 706-12. PMID 18435618 DOI: 10.1111/j.1751-1097.2007.00234.x  0.88
2008 Mukherjee P, Crank JA, Sharma PS, Wijeratne AB, Adhikary R, Bose S, Armstrong DW, Petrich JW. Dynamic solvation in phosphonium ionic liquids: comparison of bulk and micellar systems and considerations for the construction of the solvation correlation function, C(t). The Journal of Physical Chemistry. B. 112: 3390-6. PMID 18298112 DOI: 10.1021/jp7107126  0.88
2006 Mishra PP, Adhikary R, Lahiri P, Datta A. Chlorin p6 as a fluorescent probe for the investigation of surfactant-cyclodextrin interactions. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 5: 741-7. PMID 16886089 DOI: 10.1039/b601172a  0.88
1992 Adhikary RK, Barua P, Bordoloi DN. Influence of microbial pretreatment on degradation of mushroom nutrient substrate International Biodeterioration and Biodegradation. 30: 233-241. DOI: 10.1016/0964-8305(92)90030-R  0.16
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