Yu-Shan Lin, Ph.D. - Publications

2009 University of Wisconsin, Madison, Madison, WI 
statistical mechanics to investigate structure and dynamics of condensed phase systems

32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 McHugh SM, Rogers JR, Solomon SA, Yu H, Lin YS. Computational methods to design cyclic peptides. Current Opinion in Chemical Biology. 34: 95-102. PMID 27592259 DOI: 10.1016/j.cbpa.2016.08.004  0.52
2016 McHugh SM, Rogers JR, Yu H, Lin YS. Insights into how cyclic peptides switch conformation. Journal of Chemical Theory and Computation. PMID 27031286 DOI: 10.1021/acs.jctc.6b00193  0.52
2016 Lin ZZ, Zhang HY, Peng AH, Lin YD, Li L, Huang ZY. Determination of malachite green in aquatic products based on magnetic molecularly imprinted polymers Food Chemistry. 200: 32-37. DOI: 10.1016/j.foodchem.2016.01.001  0.44
2016 Li L, Lin Y, Fu Z, Zhang C. Emission characteristics of a model combustor for aero gas turbine application Experimental Thermal and Fluid Science. 72: 235-248. DOI: 10.1016/j.expthermflusci.2015.11.012  0.44
2016 Liu L, Jin J, Lin Y, Hou F, Li S. The effect of calcium on nitric oxide heterogeneous adsorption on carbon: A first-principles study Energy. 106: 212-220. DOI: 10.1016/j.energy.2016.02.148  0.48
2015 Lili Y, Ruihua M, Li L, Fei L, Lin Y, Li S. Intracellular Doxorubicin Delivery of a Core Cross-linked, Redox-responsive Polymeric Micelles. International Journal of Pharmaceutics. PMID 26706436 DOI: 10.1016/j.ijpharm.2015.12.042  0.44
2015 Hou L, Li S, Lin Y, Wang D, Xie T. Photogenerated charges transfer across the interface between NiO and TiO2 nanotube arrays for photocatalytic degradation: A surface photovoltage study. Journal of Colloid and Interface Science. 464: 96-102. PMID 26609928 DOI: 10.1016/j.jcis.2015.11.019  0.48
2015 Cong H, Li H, Liang J, Yang K, Zhao T, Qiu WS, Lin YS. Effect of Selenious Yeast Tablets on the Thyroglobulin Antibody Level in ThyroglobulinAntibody-positive Patients with Differentiated Thyroid Cancer. Zhongguo Yi Xue Ke Xue Yuan Xue Bao. Acta Academiae Medicinae Sinicae. 37: 591-595. PMID 26564513 DOI: 10.3881/j.issn.1000-503X.2015.05.017  0.32
2015 Yang X, Liang J, Li TJ, Yang K, Liang DQ, Yu Z, Lin YS. Postoperative stimulated thyroglobulin level and recurrence risk stratification in differentiated thyroid cancer. Chinese Medical Journal. 128: 1058-64. PMID 25881600 DOI: 10.4103/0366-6999.155086  0.32
2015 Cong H, Liang J, Li F, Qiu WS, Lin YS. Changes in thyroglobulin antibodies after treatment of differentiated thyroid cancer and its influencing factors. Zhongguo Yi Xue Ke Xue Yuan Xue Bao. Acta Academiae Medicinae Sinicae. 37: 61-5. PMID 25676272 DOI: 10.3881/j.issn.1000-503X.2015.01.011  0.32
2015 Yu H, Lin YS. Toward structure prediction of cyclic peptides. Physical Chemistry Chemical Physics : Pccp. 17: 4210-9. PMID 25566700 DOI: 10.1039/c4cp04580g  0.52
2014 Quartararo JS, Eshelman MR, Peraro L, Yu H, Baleja JD, Lin YS, Kritzer JA. A bicyclic peptide scaffold promotes phosphotyrosine mimicry and cellular uptake. Bioorganic & Medicinal Chemistry. 22: 6387-91. PMID 25438762 DOI: 10.1016/j.bmc.2014.09.050  0.52
2014 Lou SN, Lin YS, Hsu YS, Chiu EM, Ho CT. Soluble and insoluble phenolic compounds and antioxidant activity of immature calamondin affected by solvents and heat treatment. Food Chemistry. 161: 246-53. PMID 24837947 DOI: 10.1016/j.foodchem.2014.04.009  0.48
2014 Baiz CR, Lin YS, Peng CS, Beauchamp KA, Voelz VA, Pande VS, Tokmakoff A. A molecular interpretation of 2D IR protein folding experiments with Markov state models. Biophysical Journal. 106: 1359-70. PMID 24655511 DOI: 10.1016/j.bpj.2014.02.008  0.52
2013 Spokoyny AM, Zou Y, Ling JJ, Yu H, Lin YS, Pentelute BL. A perfluoroaryl-cysteine S(N)Ar chemistry approach to unprotected peptide stapling. Journal of the American Chemical Society. 135: 5946-9. PMID 23560559 DOI: 10.1021/ja400119t  0.52
2012 Lin YS, Pande VS. Effects of familial mutations on the monomer structure of Aβ₄₂. Biophysical Journal. 103: L47-9. PMID 23260058 DOI: 10.1016/j.bpj.2012.11.009  0.52
2012 Lin YS, Li S, Ho CT, Lo CY. Simultaneous analysis of six polymethoxyflavones and six 5-hydroxy-polymethoxyflavones by high performance liquid chromatography combined with linear ion trap mass spectrometry. Journal of Agricultural and Food Chemistry. 60: 12082-7. PMID 23181801 DOI: 10.1021/jf303896q  0.48
2012 Beauchamp KA, McGibbon R, Lin YS, Pande VS. Simple few-state models reveal hidden complexity in protein folding Proceedings of the National Academy of Sciences of the United States of America. 109: 17807-17813. PMID 22778442 DOI: 10.1073/pnas.1201810109  0.52
2012 Lin YS, Bowman GR, Beauchamp KA, Pande VS. Investigating how peptide length and a pathogenic mutation modify the structural ensemble of amyloid beta monomer Biophysical Journal. 102: 315-324. PMID 22339868 DOI: 10.1016/j.bpj.2011.12.002  0.52
2012 Beauchamp KA, Lin YS, Das R, Pande VS. Are protein force fields getting better? A systematic benchmark on 524 diverse NMR measurements Journal of Chemical Theory and Computation. 8: 1409-1414. DOI: 10.1021/ct2007814  0.52
2011 Tainter CJ, Pieniazek PA, Lin YS, Skinner JL. Robust three-body water simulation model. The Journal of Chemical Physics. 134: 184501. PMID 21568515 DOI: 10.1063/1.3587053  0.52
2010 Lin YS, Pieniazek PA, Yang M, Skinner JL. On the calculation of rotational anisotropy decay, as measured by ultrafast polarization-resolved vibrational pump-probe experiments. The Journal of Chemical Physics. 132: 174505. PMID 20459172 DOI: 10.1063/1.3409561  0.52
2010 Reddy AS, Wang L, Lin YS, Ling Y, Chopra M, Zanni MT, Skinner JL, De Pablo JJ. Solution structures of rat amylin peptide: simulation, theory, and experiment. Biophysical Journal. 98: 443-51. PMID 20141758 DOI: 10.1016/j.bpj.2009.10.029  0.52
2010 Woys AM, Lin YS, Reddy AS, Xiong W, de Pablo JJ, Skinner JL, Zanni MT. 2D IR line shapes probe ovispirin peptide conformation and depth in lipid bilayers. Journal of the American Chemical Society. 132: 2832-8. PMID 20136132 DOI: 10.1021/ja9101776  0.52
2010 Middleton CT, Woys AM, Lin YS, Reddy AS, Xiong W, de Pablo JJ, Skinner JL, Zanni MT. Protein structure determination in complex environments using 2D IR spectroscopy Optics Infobase Conference Papers 0.52
2009 Pieniazek PA, Lin YS, Chowdhary J, Ladanyi BM, Skinner JL. Vibrational spectroscopy and dynamics of water confined inside reverse micelles. The Journal of Physical Chemistry. B. 113: 15017-28. PMID 19842648 DOI: 10.1021/jp906784t  0.52
2009 Lin YS, Auer BM, Skinner JL. Water structure, dynamics, and vibrational spectroscopy in sodium bromide solutions. The Journal of Chemical Physics. 131: 144511. PMID 19831456 DOI: 10.1063/1.3242083  0.52
2009 Manor J, Mukherjee P, Lin YS, Leonov H, Skinner JL, Zanni MT, Arkin IT. Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies. Structure (London, England : 1993). 17: 247-54. PMID 19217395 DOI: 10.1016/j.str.2008.12.015  0.52
2009 Lin YS, Shorb JM, Mukherjee P, Zanni MT, Skinner JL. Empirical amide I vibrational frequency map: application to 2D-IR line shapes for isotope-edited membrane peptide bundles. The Journal of Physical Chemistry. B. 113: 592-602. PMID 19053670 DOI: 10.1021/jp807528q  0.52
2008 Moilanen DE, Fenn EE, Lin YS, Skinner JL, Bagchi B, Fayer MD. Water inertial reorientation: hydrogen bond strength and the angular potential. Proceedings of the National Academy of Sciences of the United States of America. 105: 5295-300. PMID 18381817 DOI: 10.1073/pnas.0801554105  0.52
2008 Lin YS, Ramesh SG, Shorb JM, Sibert EL, Skinner JL. Vibrational energy relaxation of the bend fundamental of dilute water in liquid chloroform and d-chloroform. The Journal of Physical Chemistry. B. 112: 390-8. PMID 18044869 DOI: 10.1021/jp075682s  0.52
2008 Skinner JL, Auer BM, Lin YS. Vibrational line shapes, spectral diffusion, and hydrogen bonding in liquid water Advances in Chemical Physics. 142: 59-103. DOI: 10.1002/9780470475935.ch2  0.52
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