Beatrix M. Ueberheide, Ph.D. - Publications

2005 University of Virginia, Charlottesville, VA 
Analytical Biochemistry

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Tufariello JM, Chapman JR, Kerantzas CA, Wong KW, Vilchèze C, Jones CM, Cole LE, Tinaztepe E, Thompson V, Fenyö D, Niederweis M, Ueberheide B, Philips JA, Jacobs WR. Separable roles for Mycobacterium tuberculosis ESX-3 effectors in iron acquisition and virulence. Proceedings of the National Academy of Sciences of the United States of America. PMID 26729876 DOI: 10.1073/Pnas.1523321113  1
2015 Campos EI, Smits AH, Kang YH, Landry S, Escobar TM, Nayak S, Ueberheide BM, Durocher D, Vermeulen M, Hurwitz J, Reinberg D. Analysis of the Histone H3.1 Interactome: A Suitable Chaperone for the Right Event. Molecular Cell. PMID 26527279 DOI: 10.1016/J.Molcel.2015.08.005  1
2015 Drummond ES, Nayak S, Ueberheide B, Wisniewski T. Proteomic analysis of neurons microdissected from formalin-fixed, paraffin-embedded Alzheimer's disease brain tissue. Scientific Reports. 5: 15456. PMID 26487484 DOI: 10.1038/Srep15456  1
2015 Young LM, Marzio A, Perez-Duran P, Reid DA, Meredith DN, Roberti D, Star A, Rothenberg E, Ueberheide B, Pagano M. TIMELESS Forms a Complex with PARP1 Distinct from Its Complex with TIPIN and Plays a Role in the DNA Damage Response. Cell Reports. 13: 451-9. PMID 26456830 DOI: 10.1016/J.Celrep.2015.09.017  1
2015 Aman JW, Imperial JS, Ueberheide B, Zhang MM, Aguilar M, Taylor D, Watkins M, Yoshikami D, Showers-Corneli P, Safavi-Hemami H, Biggs J, Teichert RW, Olivera BM. Insights into the origins of fish hunting in venomous cone snails from studies of Conus tessulatus. Proceedings of the National Academy of Sciences of the United States of America. 112: 5087-92. PMID 25848010 DOI: 10.1073/Pnas.1424435112  1
2015 Safavi-Hemami H, Gajewiak J, Karanth S, Robinson SD, Ueberheide B, Douglass AD, Schlegel A, Imperial JS, Watkins M, Bandyopadhyay PK, Yandell M, Li Q, Purcell AW, Norton RS, Ellgaard L, et al. Specialized insulin is used for chemical warfare by fish-hunting cone snails. Proceedings of the National Academy of Sciences of the United States of America. 112: 1743-8. PMID 25605914 DOI: 10.1073/Pnas.1423857112  1
2015 Wiezel GA, Dos Santos PK, Cordeiro FA, Bordon KCF, Selistre-De-Araújo HS, Ueberheide B, Arantes EC. Identification of hyaluronidase and phospholipase B in Lachesis muta rhombeata venom Toxicon. 107: 359-368. DOI: 10.1016/j.toxicon.2015.08.029  1
2014 Anand P, Grigoryan A, Bhuiyan MH, Ueberheide B, Russell V, Quinoñez J, Moy P, Chait BT, Poget SF, Holford M. Sample limited characterization of a novel disulfide-rich venom peptide toxin from terebrid marine snail Terebra variegata. Plos One. 9: e94122. PMID 24713808 DOI: 10.1371/Journal.Pone.0094122  1
2014 Gajewiak J, Azam L, Imperial J, Walewska A, Green BR, Bandyopadhyay PK, Raghuraman S, Ueberheide B, Bern M, Zhou HM, Minassian NA, Hagan RH, Flinspach M, Liu Y, Bulaj G, et al. A disulfide tether stabilizes the block of sodium channels by the conotoxin μO§-GVIIJ. Proceedings of the National Academy of Sciences of the United States of America. 111: 2758-63. PMID 24497506 DOI: 10.1073/Pnas.1324189111  1
2014 Epshtein V, Kamarthapu V, McGary K, Svetlov V, Ueberheide B, Proshkin S, Mironov A, Nudler E. UvrD facilitates DNA repair by pulling RNA polymerase backwards. Nature. 505: 372-7. PMID 24402227 DOI: 10.1038/Nature12928  1
2013 Békés M, Okamoto K, Crist SB, Jones MJ, Chapman JR, Brasher BB, Melandri FD, Ueberheide BM, Denchi EL, Huang TT. DUB-resistant ubiquitin to survey ubiquitination switches in mammalian cells. Cell Reports. 5: 826-38. PMID 24210823 DOI: 10.1016/J.Celrep.2013.10.008  1
2013 Baker LA, Ueberheide BM, Dewell S, Chait BT, Zheng D, Allis CD. The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress. Molecular and Cellular Biology. 33: 3735-48. PMID 23878396 DOI: 10.1128/Mcb.00025-13  1
2013 Bao Y, Waldemarson S, Zhang G, Wahlander A, Ueberheide B, Myung S, Reed B, Molloy K, Padovan JC, Eriksson J, Neubert TA, Chait BT, Fenyö D. Detection and correction of interference in SRM analysis. Methods (San Diego, Calif.). 61: 299-303. PMID 23707623 DOI: 10.1016/J.Ymeth.2013.05.008  1
2013 Muellenbeck MF, Ueberheide B, Amulic B, Epp A, Fenyo D, Busse CE, Esen M, Theisen M, Mordmüller B, Wardemann H. Atypical and classical memory B cells produce Plasmodium falciparum neutralizing antibodies. The Journal of Experimental Medicine. 210: 389-99. PMID 23319701 DOI: 10.1084/Jem.20121970  1
2012 Cotto-Rios XM, Békés M, Chapman J, Ueberheide B, Huang TT. Deubiquitinases as a signaling target of oxidative stress. Cell Reports. 2: 1475-84. PMID 23219552 DOI: 10.1016/J.Celrep.2012.11.011  1
2012 Bozzacco L, Yu H, Dengjel J, Trumpfheller C, Zebroski HA, Zhang N, Küttner V, Ueberheide BM, Deng H, Chait BT, Steinman RM, Mojsov S, Fenyö D. Strategy for identifying dendritic cell-processed CD4+ T cell epitopes from the HIV gag p24 protein. Plos One. 7: e41897. PMID 22860026 DOI: 10.1371/Journal.Pone.0041897  1
2012 Bhatia S, Kil YJ, Ueberheide B, Chait BT, Tayo L, Cruz L, Lu B, Yates JR, Bern M. Constrained de novo sequencing of conotoxins. Journal of Proteome Research. 11: 4191-200. PMID 22709442 DOI: 10.1021/Pr300312H  1
2011 Scheid JF, Mouquet H, Ueberheide B, Diskin R, Klein F, Oliveira TY, Pietzsch J, Fenyo D, Abadir A, Velinzon K, Hurley A, Myung S, Boulad F, Poignard P, Burton DR, et al. Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding. Science (New York, N.Y.). 333: 1633-7. PMID 21764753 DOI: 10.1126/Science.1207227  1
2011 Ruthenburg AJ, Li H, Milne TA, Dewell S, McGinty RK, Yuen M, Ueberheide B, Dou Y, Muir TW, Patel DJ, Allis CD. Recognition of a mononucleosomal histone modification pattern by BPTF via multivalent interactions. Cell. 145: 692-706. PMID 21596426 DOI: 10.1016/J.Cell.2011.03.053  1
2011 Bhatia S, Kil YJ, Ueberheide B, Chait B, Tayo LL, Cruz LJ, Lu B, Yates JR, Bern M. Constrained de novo sequencing of peptides with application to conotoxins Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6577: 16-30. DOI: 10.1007/978-3-642-20036-6_2  1
2010 Garcia BA, Cooper HJ, Dorrestein PC, Tang K, Ueberheide BM. Proteomics. Journal of Biomedicine & Biotechnology. 2010: 453045. PMID 21541239 DOI: 10.1155/2010/453045  1
2010 Zhang G, Ueberheide BM, Waldemarson S, Myung S, Molloy K, Eriksson J, Chait BT, Neubert TA, Fenyö D. Protein quantitation using mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 673: 211-22. PMID 20835801 DOI: 10.1007/978-1-60761-842-3_13  1
2009 Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB. Proteome-wide prediction of acetylation substrates. Proceedings of the National Academy of Sciences of the United States of America. 106: 13785-90. PMID 19666589 DOI: 10.1073/Pnas.0906801106  1
2009 Ueberheide BM, Fenyö D, Alewood PF, Chait BT. Rapid sensitive analysis of cysteine rich peptide venom components. Proceedings of the National Academy of Sciences of the United States of America. 106: 6910-5. PMID 19380747 DOI: 10.1073/Pnas.0900745106  1
2007 Garcia BA, Mollah S, Ueberheide BM, Busby SA, Muratore TL, Shabanowitz J, Hunt DF. Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nature Protocols. 2: 933-8. PMID 17446892 DOI: 10.1038/Nprot.2007.106  1
2007 Taverna SD, Ueberheide BM, Liu Y, Tackett AJ, Diaz RL, Shabanowitz J, Chait BT, Hunt DF, Allis CD. Long-distance combinatorial linkage between methylation and acetylation on histone H3 N termini. Proceedings of the National Academy of Sciences of the United States of America. 104: 2086-91. PMID 17284592 DOI: 10.1073/Pnas.0610993104  1
2007 Ueberheide BM, Mollah S. Deciphering the histone code using mass spectrometry International Journal of Mass Spectrometry. 259: 46-56. DOI: 10.1016/J.Ijms.2006.09.001  1
2006 Mikesh LM, Ueberheide B, Chi A, Coon JJ, Syka JE, Shabanowitz J, Hunt DF. The utility of ETD mass spectrometry in proteomic analysis. Biochimica Et Biophysica Acta. 1764: 1811-22. PMID 17118725 DOI: 10.1016/J.Bbapap.2006.10.003  1
2005 Fischle W, Tseng BS, Dormann HL, Ueberheide BM, Garcia BA, Shabanowitz J, Hunt DF, Funabiki H, Allis CD. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature. 438: 1116-22. PMID 16222246 DOI: 10.1038/Nature04219  1
2005 Coon JJ, Ueberheide B, Syka JE, Dryhurst DD, Ausio J, Shabanowitz J, Hunt DF. Protein identification using sequential ion/ion reactions and tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 102: 9463-8. PMID 15983376 DOI: 10.1073/Pnas.0503189102  1
2004 Syka JE, Marto JA, Bai DL, Horning S, Senko MW, Schwartz JC, Ueberheide B, Garcia B, Busby S, Muratore T, Shabanowitz J, Hunt DF. Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. Journal of Proteome Research. 3: 621-6. PMID 15253445 DOI: 10.1021/Pr0499794  1
2004 Barber CM, Turner FB, Wang Y, Hagstrom K, Taverna SD, Mollah S, Ueberheide B, Meyer BJ, Hunt DF, Cheung P, Allis CD. The enhancement of histone H4 and H2A serine 1 phosphorylation during mitosis and S-phase is evolutionarily conserved. Chromosoma. 112: 360-71. PMID 15133681 DOI: 10.1007/S00412-004-0281-9  1
2003 Rice JC, Briggs SD, Ueberheide B, Barber CM, Shabanowitz J, Hunt DF, Shinkai Y, Allis CD. Histone methyltransferases direct different degrees of methylation to define distinct chromatin domains. Molecular Cell. 12: 1591-8. PMID 14690610 DOI: 10.1016/S1097-2765(03)00479-9  1
2002 Mollah S, Ueberheide B, Busby S, Moran R, Barber CM, Shabanowitz J, Allis CD, Hunt DF. New approach to mapping of post-translational modifications of histones Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 331-332.  1
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