Ravindra Venkatramani, Ph.D. - Publications

Affiliations: 
2005 University of Rochester, Rochester, NY 
Area:
dynamics and relaxation processes of large molecules, biological complexes and semiconductors

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2014 Hodgkiss J, Conboy G, Hutchings G, Higgins S, Galbraith I, Findlay N, Taylor R, Salle M, Zhang S, Frey G, Bâldea I, Samuel I, Ebenhoch B, Wudl F, Turak A, ... ... Venkatramani R, et al. Organic photovoltaics and energy: general discussion. Faraday Discussions. 174: 341-55. PMID 25406589 DOI: 10.1039/c4fd90050B  1
2014 Hodgkiss J, Zysman-Colman E, Higgins S, Solomon G, Bâldea I, Samuel I, Venkataraman L, Wudl F, Xu B, Venkatramani R, Ottosson H, Perepichka D, Lemmer U, Skabara P, Mount A, et al. Molecular electronics: general discussion. Faraday Discussions. 174: 125-51. PMID 25406517 DOI: 10.1039/c4fd90049a  1
2014 Venkatramani R, Wierzbinski E, Waldeck DH, Beratan DN. Breaking the simple proportionality between molecular conductances and charge transfer rates. Faraday Discussions. 174: 57-78. PMID 25277465 DOI: 10.1039/c4fd00106k  1
2014 Bhowmik D, MacLaughlin CM, Chandrakesan M, Ramesh P, Venkatramani R, Walker GC, Maiti S. pH changes the aggregation propensity of amyloid-β without altering the monomer conformation. Physical Chemistry Chemical Physics : Pccp. 16: 885-9. PMID 24292856 DOI: 10.1039/c3cp54151g  1
2013 Chakraborty S, Rendón-Ramírez A, Ásgeirsson B, Dutta M, Ghosh AS, Oda M, Venkatramani R, Rao BJ, Dandekar AM, Goñi FM. The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins. F1000research. 2: 286. PMID 25671081 DOI: 10.12688/f1000research.2-286.v3  1
2013 Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment. F1000research. 2: 243. PMID 25506420 DOI: 10.12688/f1000research.2-243.v3  1
2013 Chakraborty S, Venkatramani R, Rao BJ, Asgeirsson B, Dandekar AM. Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms. F1000research. 2: 211. PMID 24555103 DOI: 10.12688/f1000research.2-211.v3  1
2013 Wierzbinski E, Venkatramani R, Davis KL, Bezer S, Kong J, Xing Y, Borguet E, Achim C, Beratan DN, Waldeck DH. The single-molecule conductance and electrochemical electron-transfer rate are related by a power law. Acs Nano. 7: 5391-401. PMID 23692478 DOI: 10.1021/nn401321k  1
2012 Wierzbinski E, de Leon A, Yin X, Balaeff A, Davis KL, Rapireddy S, Reppireddy S, Venkatramani R, Keinan S, Ly DH, Madrid M, Beratan DN, Achim C, Waldeck DH. Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes. Journal of the American Chemical Society. 134: 9335-42. PMID 22548314 DOI: 10.1021/ja301677z  1
2011 Venkatramani R, Keinan S, Balaeff A, Beratan DN. Nucleic Acid Charge Transfer: Black, White and Gray. Coordination Chemistry Reviews. 255: 635-648. PMID 21528017 DOI: 10.1016/j.ccr.2010.12.010  1
2011 Venkatramani R, Davis KL, Wierzbinski E, Bezer S, Balaeff A, Keinan S, Paul A, Kocsis L, Beratan DN, Achim C, Waldeck DH. Evidence for a near-resonant charge transfer mechanism for double-stranded peptide nucleic acid. Journal of the American Chemical Society. 133: 62-72. PMID 21141966 DOI: 10.1021/ja107622m  1
2011 Shih AJ, Telesco SE, Liu Y, Venkatramani R, Radhakrishnan R. Computational methods related to reaction chemistry Comprehensive Biomaterials. 3: 155-169.  1
2010 Xing Y, Park TH, Venkatramani R, Keinan S, Beratan DN, Therien MJ, Borguet E. Optimizing single-molecule conductivity of conjugated organic oligomers with carbodithioate linkers. Journal of the American Chemical Society. 132: 7946-56. PMID 20433175 DOI: 10.1021/ja909559m  1
2010 Venkatramani R, Radhakrishnan R. Computational delineation of the catalytic step of a high-fidelity DNA polymerase. Protein Science : a Publication of the Protein Society. 19: 815-25. PMID 20162624 DOI: 10.1002/pro.361  1
2010 Keinan S, Venkatramani R, Balaeff A, Beratan DN. Is MD geometry sampling sufficient for nucleobase electronic structure analysis of et reactions? Comparing classical MD and QM/MM methods Journal of Physical Chemistry C. 114: 20496-20502. DOI: 10.1021/jp104919g  1
2009 Beratan DN, Skourtis SS, Balabin IA, Balaeff A, Keinan S, Venkatramani R, Xiao D. Steering electrons on moving pathways. Accounts of Chemical Research. 42: 1669-78. PMID 19645446 DOI: 10.1021/ar900123t  1
2009 Paul A, Bezer S, Venkatramani R, Kocsis L, Wierzbinski E, Balaeff A, Keinan S, Beratan DN, Achim C, Waldeck DH. Role of nucleobase energetics and nucleobase interactions in single-stranded peptide nucleic acid charge transfer. Journal of the American Chemical Society. 131: 6498-507. PMID 19382798 DOI: 10.1021/ja9000163  1
2009 Venkatramani R, Zang DY, Oh C, Grote J, Beratan D. Photoconductivity and current-voltage characteristics of thin DNA films: Experiments and modeling Proceedings of Spie - the International Society For Optical Engineering. 7403. DOI: 10.1117/12.831024  1
2008 Hatcher E, Balaeff A, Keinan S, Venkatramani R, Beratan DN. PNA versus DNA: effects of structural fluctuations on electronic structure and hole-transport mechanisms. Journal of the American Chemical Society. 130: 11752-61. PMID 18693722 DOI: 10.1021/ja802541e  1
2008 Venkatramani R, Radhakrishnan R. Computational study of the force dependence of phosphoryl transfer during DNA synthesis by a high fidelity polymerase. Physical Review Letters. 100: 088102. PMID 18352668 DOI: 10.1103/PhysRevLett.100.088102  1
2008 Venkatramani R, Radhakrishnan R. Effect of oxidatively damaged DNA on the active site preorganization during nucleotide incorporation in a high fidelity polymerase from Bacillus stearothermophilus. Proteins. 71: 1360-72. PMID 18058909 DOI: 10.1002/prot.21824  1
2008 Radhakrishnan R, Venkatramani R. Dynamic coupling machinery in DNA polymerases Aiche Annual Meeting, Conference Proceedings 1
2005 Venkatramani R, Mukamel S. Dephasing-induced vibronic resonances in difference frequency generation spectroscopy. The Journal of Physical Chemistry. B. 109: 8132-43. PMID 16851951 DOI: 10.1021/jp0446682  1
2003 Venkatramani R, Hayashi T, Mukamel S. Multidimensional nonlinear spectroscopy of conformational relaxation in Azobenzene peptide Springer Series in Chemical Physics. 71: 619-621.  1
2003 Venkatramani R, Mukamel S. Correlated line broadening in three pulse multidimensional spectroscopy of coupled vibrations Springer Series in Chemical Physics. 71: 565-567.  1
2002 Venkatramani R, Mukamel S. Correlated line broadening in multidimensional vibrational spectroscopy Journal of Chemical Physics. 117: 11089-11101. DOI: 10.1063/1.1518001  1
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