Wei Zhuang, Ph.D. - Publications

Affiliations: 
2007 University of California, Irvine, Irvine, CA 
Area:
dynamics and relaxation processes of large molecules, biological complexes and semiconductors

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Zhuang W, Li Y, Chen P, Wang J, Liu W, Chen J. Do renal cell carcinoma patients with brain metastases still need nephrectomy? International Urology and Nephrology. PMID 30953259 DOI: 10.1007/s11255-019-02139-9  0.44
2018 Wang L, Chen X, Guo X, Li J, Liu Q, Kang F, Wang X, Hu C, Liu H, Gong W, Zhuang W, Liu X, Wang J. Significant expansion and red-shifting of fluorescent protein chromophore determined through computational design and genetic code expansion. Biophysics Reports. 4: 273-285. PMID 30533492 DOI: 10.1007/s41048-018-0073-z  0.44
2018 Liu J, Li Y, Tang Y, Cheng J, Wang J, Li J, Ma X, Zhuang W, Gong J, Liu Z. Rhein protects the myocardiac cells against hypoxia/reoxygention-induced injury by suppressing GSK3β activity. Phytomedicine : International Journal of Phytotherapy and Phytopharmacology. 51: 1-6. PMID 30466606 DOI: 10.1016/j.phymed.2018.06.029  0.44
2018 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Reply to Stirnemann et al.: Frame retardation is the key reason behind the general slowdown of water reorientation dynamics in concentrated electrolytes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29748428 DOI: 10.1073/pnas.1805682115  1
2018 Niu H, Wang J, Zhuang W, Liu D, Chen Y, Zhu C, Ying H. Comparative transcriptomic and proteomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production. Scientific Reports. 8: 1246. PMID 29352122 DOI: 10.1038/s41598-017-18889-4  0.44
2017 Zhang Q, Wu T, Chen C, Mukamel S, Zhuang W. Molecular mechanism of water reorientational slowing down in concentrated ionic solutions. Proceedings of the National Academy of Sciences of the United States of America. PMID 28874580 DOI: 10.1073/pnas.1707453114  1
2017 Lu J, Zhang H, Chen X, Zou Y, Li J, Wang L, Wu M, Zang J, Yu Y, Zhuang W, Xia Q, Wang J. A Small Molecule Activator of SIRT3 Promotes Deacetylation and Activation of Manganese Superoxide Dismutase. Free Radical Biology & Medicine. PMID 28711502 DOI: 10.1016/j.freeradbiomed.2017.07.012  0.44
2017 Zhang H, Pan J, Qiu F, Wei T, Li Z, Jiang X, Zhuang W, Liu Z, Zhang Z, Dong H. A novel modified physiologically relevant model for cardiac angiogenesis. Microvascular Research. PMID 28666802 DOI: 10.1016/j.mvr.2017.06.007  0.64
2016 Zhuang W, Zhang H, Pan J, Li Z, Wei T, Cui H, Liu Z, Guan Q, Dong H, Zhang Z. PEDF and PEDF-derived peptide 44mer inhibit oxygen-glucose deprivation-induced oxidative stress through upregulating PPARγ via PEDF-R in H9c2 cells. Biochemical and Biophysical Research Communications. PMID 26966066 DOI: 10.1016/j.bbrc.2016.02.110  0.64
2016 Hou W, Yang L, Deng D, Ye J, Clarke K, Yang Z, Zhuang W, Liu J, Huang J. Assessing quality of urban underground spaces by coupling 3D geological models: The case study of Foshan city, South China Computers and Geosciences. 89: 1-11. DOI: 10.1016/j.cageo.2015.07.016  0.4
2015 Zhang H, Wei T, Jiang X, Li Z, Cui H, Pan J, Zhuang W, Sun T, Liu Z, Zhang Z, Dong H. PEDF and 34-mer inhibit angiogenesis in the heart by inducing tip cells apoptosis via up-regulating PPAR-γ to increase surface FasL. Apoptosis : An International Journal On Programmed Cell Death. PMID 26519036 DOI: 10.1007/s10495-015-1186-1  0.64
2015 Fang B, Wang T, Chen X, Jin T, Zhang R, Zhuang W. Modeling Vibrational Spectra of Ester Carbonyl Stretch in Water and DMSO based on Molecular Dynamics Simulation. The Journal of Physical Chemistry. B. PMID 26335032 DOI: 10.1021/acs.jpcb.5b06541  0.44
2015 Shen Y, Wu T, Jiang B, Deng G, Li J, Chen H, Guo X, Ge C, Chen Y, Hong J, Yang X, Yuan K, Zhuang W, Zheng J. Comparison Studies on Sub-Nanometer-Sized Ion Clusters in Aqueous Solutions: Vibrational Energy Transfers, MD Simulations, and Neutron Scattering. The Journal of Physical Chemistry. B. PMID 26135548 DOI: 10.1021/acs.jpcb.5b04530  0.44
2015 Pan Z, Wu T, Jin T, Liu Y, Nagata Y, Zhang R, Zhuang W. Low frequency 2D Raman-THz spectroscopy of ionic solution: A simulation study. The Journal of Chemical Physics. 142: 212419. PMID 26049439 DOI: 10.1063/1.4917260  0.44
2015 Yang L, Hur J, Zhuang W. Occurrence and behaviors of fluorescence EEM-PARAFAC components in drinking water and wastewater treatment systems and their applications: a review. Environmental Science and Pollution Research International. 22: 6500-10. PMID 25854204 DOI: 10.1007/s11356-015-4214-3  0.4
2015 Yang L, Weng W, Sun ZX, Fu XJ, Ma J, Zhuang WF. SphK1 inhibitor II (SKI-II) inhibits acute myelogenous leukemia cell growth in vitro and in vivo. Biochemical and Biophysical Research Communications. 460: 903-8. PMID 25824043 DOI: 10.1016/j.bbrc.2015.03.114  0.4
2015 Zhou M, Zhuang W, Yuan Y, Li Z, Cai Y. Investigation on vitamin D knowledge, attitude and practice of university students in Nanjing, China - CORRIGENDUM. Public Health Nutrition. 1. PMID 25790855 DOI: 10.1017/S1368980015001160  0.64
2015 Li Z, Chen Y, Liu D, Zhao N, Cheng H, Ren H, Guo T, Niu H, Zhuang W, Wu J, Ying H. Involvement of glycolysis/gluconeogenesis and signaling regulatory pathways in Saccharomyces cerevisiae biofilms during fermentation. Frontiers in Microbiology. 6: 139. PMID 25755652 DOI: 10.3389/fmicb.2015.00139  0.64
2015 Zhou M, Zhuang W, Yuan Y, Li Z, Cai Y. Investigation on vitamin D knowledge, attitude and practice of university students in Nanjing, China. Public Health Nutrition. 1-5. PMID 25702904 DOI: 10.1017/S1368980015000373  0.64
2015 Chen H, Bian H, Li J, Wen X, Zhang Q, Zhuang W, Zheng J. Vibrational energy transfer: an angstrom molecular ruler in studies of ion pairing and clustering in aqueous solutions. The Journal of Physical Chemistry. B. 119: 4333-49. PMID 25679402 DOI: 10.1021/jp512320a  0.44
2015 Chen H, Zhang Q, Guo X, Wen X, Li J, Zhuang W, Zheng J. Nonresonant energy transfers independent on the phonon densities in polyatomic liquids. The Journal of Physical Chemistry. A. 119: 669-80. PMID 25549247 DOI: 10.1021/jp511651t  0.44
2015 Zhao N, Ren H, Li Z, Zhao T, Shi X, Cheng H, Zhuang W, Chen Y, Ying H. Enhancement of nuclease P1 production by Penicillium citrinum YL104 immobilized on activated carbon filter sponge. Applied Microbiology and Biotechnology. 99: 1145-53. PMID 25472432 DOI: 10.1007/s00253-014-6163-z  0.64
2015 Wu J, Zhuang W, Ying H, Jiao P, Li R, Wen Q, Wang L, Zhou J, Yang P. Acetone-butanol-ethanol competitive sorption simulation from single, binary, and ternary systems in a fixed-bed of KA-I resin. Biotechnology Progress. 31: 124-34. PMID 25395070 DOI: 10.1002/btpr.2019  0.44
2015 Liu S, Yang L, Zhuang W, Wang W, Huang D, Huang Y. Design of lightning protection test generator for airborne equipment Beijing Hangkong Hangtian Daxue Xuebao/Journal of Beijing University of Aeronautics and Astronautics. 41: 1673-1677. DOI: 10.13700/j.bh.1001-5965.2014.0651  0.4
2015 Zhuang W, He Q, Wang J, Chen Y, Feng F, Wang X, Zhang H, Ma X, Wang Y. Analysis of intensity and altitude of haze at Shanghai in winter based on surface micro-pulse lidar Huanjing Kexue Xuebao/Acta Scientiae Circumstantiae. 35: 627-635. DOI: 10.13671/j.hjkxxb.2014.0836  0.44
2015 He L, Zhao G, Jin N, Zhuang W, Yu Q. Global sensitivity analysis of APSIM-Wheat parameters in different climate zones and yield levels Nongye Gongcheng Xuebao/Transactions of the Chinese Society of Agricultural Engineering. 31: 148-157. DOI: 10.11975/j.issn.1002-6819.2015.14.021  0.44
2015 Wu T, Wang T, Chen X, Fang B, Zhang R, Zhuang W. Modeling the temperature-dependent peptide vibrational spectra based on implicit-solvent model and enhance sampling technique Chinese Physics B. 25. DOI: 10.1088/1674-1056/25/1/018201  0.44
2015 Zhuang W, Lu L, Li W, An R, Feng X, Wu X, Zhu Y, Lu X. In-situ synthesized mesoporous TiO2-B/anatase microparticles: Improved anodes for lithium ion batteries Chinese Journal of Chemical Engineering. 23: 583-589. DOI: 10.1016/j.cjche.2014.11.020  0.44
2015 Zhang R, Pan Z, Zhuang W. Modeling the low frequency vibrational spectroscopy of ionic solutions International Journal of Quantum Chemistry. 115: 564-569. DOI: 10.1002/qua.24826  0.44
2014 Zhuang W, Li H, Liu Y, Zhao J, Ha S, Xiang W, Bai X, Li Z, Han Y, Sheng X. Association of specific genetic polymorphisms with age-related macular degeneration in a northern Chinese population. Ophthalmic Genetics. 35: 156-61. PMID 24865190 DOI: 10.3109/13816810.2014.921314  0.64
2014 Chen Y, Ren H, Liu D, Zhao T, Shi X, Cheng H, Zhao N, Li Z, Li B, Niu H, Zhuang W, Xie J, Chen X, Wu J, Ying H. Enhancement of n-butanol production by in situ butanol removal using permeating-heating-gas stripping in acetone-butanol-ethanol fermentation. Bioresource Technology. 164: 276-84. PMID 24862004 DOI: 10.1016/j.biortech.2014.04.107  0.64
2014 Zhang Q, Zhang R, Zhao Y, Li H, Gao YQ, Zhuang W. Pairing preferences of the model mono-valence mono-atomic ions investigated by molecular simulation. The Journal of Chemical Physics. 140: 184504. PMID 24832285 DOI: 10.1063/1.4874255  0.44
2014 Wu T, Zhang R, Li H, Yang L, Zhuang W. Discriminating trpzip2 and trpzip4 peptides' folding landscape using the two-dimensional infrared spectroscopy: a simulation study. The Journal of Chemical Physics. 140: 055101. PMID 24511982 DOI: 10.1063/1.4863562  0.4
2014 Zhou YJ, Zhang J, Wang XD, Yang L, Jiang DH, Li GQ, Hsiang T, Zhuang WY. Morphological and phylogenetic identification of Botrytis sinoviticola, a novel cryptic species causing gray mold disease of table grapes (Vitis vinifera) in China. Mycologia. 106: 43-56. PMID 24396103 DOI: 10.3852/13-032  0.4
2013 Sun X, Hao W, Wang J, Di B, Chen Q, Zhuang W, Yu Q, Zhang P. [Application of general retention time formula for gradient liquid chromatography in the studies of ladder-like gradient elution]. SE Pu = Chinese Journal of Chromatography / Zhongguo Hua Xue Hui. 31: 753-7. PMID 24369608  0.44
2013 Wu T, Yang L, Zhang R, Shao Q, Zhuang W. Modeling the thermal unfolding 2DIR spectra of a β-hairpin peptide based on the implicit solvent MD simulation. The Journal of Physical Chemistry. A. 117: 6256-63. PMID 23496267 DOI: 10.1021/jp400625a  0.44
2013 Zhang Q, Xie W, Bian H, Gao YQ, Zheng J, Zhuang W. Microscopic origin of the deviation from Stokes-Einstein behavior observed in dynamics of the KSCN aqueous solutions: a MD simulation study. The Journal of Physical Chemistry. B. 117: 2992-3004. PMID 23414456 DOI: 10.1021/jp400441e  0.44
2012 Bian H, Li J, Zhang Q, Chen H, Zhuang W, Gao YQ, Zheng J. Ion segregation in aqueous solutions. The Journal of Physical Chemistry. B. 116: 14426-32. PMID 23181902 DOI: 10.1021/jp310153n  0.44
2012 Falvo C, Zhuang W, Kim YS, Axelsen PH, Hochstrasser RM, Mukamel S. Frequency distribution of the amide-I vibration sorted by residues in amyloid fibrils revealed by 2D-IR measurements and simulations. The Journal of Physical Chemistry. B. 116: 3322-30. PMID 22338639 DOI: 10.1021/jp2096423  0.44
2010 Zhuang W, Sgourakis NG, Li Z, Garcia AE, Mukamel S. Discriminating early stage A{beta}42 monomer structures using chirality-induced 2DIR spectroscopy in a simulation study. Proceedings of the National Academy of Sciences of the United States of America. 107: 15687-92. PMID 20798063 DOI: 10.1073/pnas.1002131107  0.44
2009 Alemdaroglu FE, Zhuang W, Zöphel L, Wang J, Berger R, Rabe JP, Herrmann A. Generation of multiblock copolymers by PCR: Synthesis, visualization and nanomechanical properties Nano Letters. 9: 3658-3662. PMID 19621920 DOI: 10.1021/nl901899t  0.44
2009 Sengupta N, Maekawa H, Zhuang W, Toniolo C, Mukamel S, Tobias DJ, Ge NH. Sensitivity of 2D IR spectra to peptide helicity: a concerted experimental and simulation study of an octapeptide. The Journal of Physical Chemistry. B. 113: 12037-49. PMID 19496555 DOI: 10.1021/jp901504r  0.44
2009 Zhuang W, Hayashi T, Mukamel S. Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges. Angewandte Chemie (International Ed. in English). 48: 3750-81. PMID 19415637 DOI: 10.1002/anie.200802644  1
2009 Mukamel S, Abramavicius D, Yang L, Zhuang W, Schweigert IV, Voronine DV. Coherent multidimensional optical probes for electron correlations and exciton dynamics: from NMR to X-rays. Accounts of Chemical Research. 42: 553-62. PMID 19323494 DOI: 10.1021/ar800258z  1
2008 Falvo C, Hayashi T, Zhuang W, Mukamel S. Coherent two dimensional infrared spectroscopy of a cyclic decapeptide antamanide. A simulation study of the amide-I and A bands. The Journal of Physical Chemistry. B. 112: 12479-90. PMID 18781709 DOI: 10.1021/jp801493y  1
2008 Li Z, Yu H, Zhuang W, Mukamel S. Geometry and Excitation Energy Fluctuations of NMA in Aqueous Solution with CHARMM, AMBER, OPLS, and GROMOS Force Fields: Implications for Protein Ultraviolet Spectra Simulation. Chemical Physics Letters. 452: 78-83. PMID 18438457 DOI: 10.1016/j.cplett.2007.12.022  0.44
2008 Lorenz VO, Mukamel S, Zhuang W, Cundiff ST. Ultrafast optical spectroscopy of spectral fluctuations in a dense atomic vapor. Physical Review Letters. 100: 013603. PMID 18232760 DOI: 10.1103/PhysRevLett.100.013603  0.44
2008 Wang J, Zhuang W, Mukamel S, Hochstrasser R. Two-dimensional infrared spectroscopy as a probe of the solvent electrostatic field for a twelve residue peptide. The Journal of Physical Chemistry. B. 112: 5930-7. PMID 18078331 DOI: 10.1021/jp075683k  0.44
2007 Li Z, Abramavicius D, Zhuang W, Mukamel S. Two Dimensional Electronic Correlation Spectroscopy of the npi* and pipi* Protein Backbone Transitions: A Simulation Study. Chemical Physics. 341: 29-36. PMID 19011677 DOI: 10.1016/j.chemphys.2007.03.029  1
2007 Volkov VV, Chelli R, Zhuang W, Nuti F, Takaoka Y, Papini AM, Mukamel S, Righini R. Electrostatic interactions in phospholipid membranes revealed by coherent 2D IR spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 104: 15323-7. PMID 17881567 DOI: 10.1073/pnas.0706426104  1
2007 Zhuang W, Abramavicius D, Voronine DV, Mukamel S. Simulation of two-dimensional infrared spectroscopy of amyloid fibrils. Proceedings of the National Academy of Sciences of the United States of America. 104: 14233-6. PMID 17675411 DOI: 10.1073/pnas.0700392104  1
2006 Zhuang W, Abramavicius D, Mukamel S. Two-dimensional vibrational optical probes for peptide fast folding investigation. Proceedings of the National Academy of Sciences of the United States of America. 103: 18934-8. PMID 17146054 DOI: 10.1073/pnas.0606912103  1
2006 Zhuang W, Abramavicius D, Hayashi T, Mukamel S. Simulation protocols for coherent femtosecond vibrational spectra of peptides. The Journal of Physical Chemistry. B. 110: 3362-74. PMID 16494351 DOI: 10.1021/jp055813u  1
2005 Hayashi T, la Cour Jansen T, Zhuang W, Mukamel S. Collective solvent coordinates for the infrared spectrum of HOD in D2O based on an ab initio electrostatic map. The Journal of Physical Chemistry. A. 109: 64-82. PMID 16839090 DOI: 10.1021/jp046685x  1
2005 Hayashi T, Zhuang W, Mukamel S. Electrostatic DFT map for the complete vibrational amide band of NMA. The Journal of Physical Chemistry. A. 109: 9747-59. PMID 16833288 DOI: 10.1021/jp052324l  1
2005 Jansen Tl, Hayashi T, Zhuang W, Mukamel S. Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water. The Journal of Chemical Physics. 123: 114504. PMID 16392570 DOI: 10.1016/j.rhum.2014.07.007  1
2005 Mukamel S, Zhuang W. Coherent femtosecond multidimensional probes of molecular vibrations. Proceedings of the National Academy of Sciences of the United States of America. 102: 13717-8. PMID 16172375 DOI: 10.1073/pnas.0506874102  1
2005 Zhuang W, Abramavicius D, Mukamel S. Dissecting coherent vibrational spectra of small proteins into secondary structural elements by sensitivity analysis. Proceedings of the National Academy of Sciences of the United States of America. 102: 7443-8. PMID 15894625 DOI: 10.1073/pnas.0408781102  1
2004 Jansen Tl, Zhuang W, Mukamel S. Stochastic Liouville equation simulation of multidimensional vibrational line shapes of trialanine. The Journal of Chemical Physics. 121: 10577-98. PMID 15549941 DOI: 10.1063/1.1807824  1
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