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Gavin D. Bascom, Ph.D. - Publications

Affiliations: 
2014 Chemistry University of California, Irvine, Irvine, CA 
Area:
Theoretical Chemistry and Biophysics
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Jung J, Nishima W, Daniels M, Bascom G, Kobayashi C, Adedoyin A, Wall M, Lappala A, Phillips D, Fischer W, Tung CS, Schlick T, Sugita Y, Sanbonmatsu KY. Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations. Journal of Computational Chemistry. PMID 30994934 DOI: 10.1002/Jcc.25840  0.347
2019 Bascom GD, Myers CG, Schlick T. Mesoscale modeling reveals formation of an epigenetically driven HOXC gene hub. Proceedings of the National Academy of Sciences of the United States of America. PMID 30718394 DOI: 10.1073/Pnas.1816424116  0.345
2018 Bascom GD, Schlick T. Chromatin Fiber Folding Directed by Cooperative Histone Tail Acetylation and Linker Histone Binding. Biophysical Journal. PMID 29655483 DOI: 10.1016/J.Bpj.2018.03.008  0.324
2017 Bascom GD, Kim T, Schlick T. Kilobase Pair Chromatin Fiber Contacts Promoted by Living-System-Like DNA Linker Length Distributions and Nucleosome Depletion. The Journal of Physical Chemistry. B. PMID 28299939 DOI: 10.1021/Acs.Jpcb.7B00998  0.377
2017 Bascom G, Schlick T. Linking Chromatin Fibers to Gene Folding by Hierarchical Looping. Biophysical Journal. PMID 28153411 DOI: 10.1016/J.Bpj.2017.01.003  0.413
2016 Bascom GD, Sanbonmatsu KY, Schlick T. Mesoscale Modeling Reveals Hierarchical Looping of Chromatin Fibers Near Gene Regulatory Elements. The Journal of Physical Chemistry. B. PMID 27218881 DOI: 10.1021/Acs.Jpcb.6B03197  0.409
2016 Grigoryev SA, Bascom G, Buckwalter JM, Schubert MB, Woodcock CL, Schlick T. Hierarchical looping of zigzag nucleosome chains in metaphase chromosomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 26787893 DOI: 10.1073/Pnas.1518280113  0.372
2014 Bascom G, Andricioaei I. Single-Walled Carbon Nanotubes Modulate the B- to A-DNA Transition. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 118: 29441-29447. PMID 25553205 DOI: 10.1021/Jp5081274  0.535
2013 Salmon L, Bascom G, Andricioaei I, Al-Hashimi HM. A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed. Journal of the American Chemical Society. 135: 5457-66. PMID 23473378 DOI: 10.1021/Ja400920W  0.521
2012 Nikolova EN, Bascom GD, Andricioaei I, Al-Hashimi HM. Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations. Biochemistry. 51: 8654-64. PMID 23035755 DOI: 10.1021/Bi3009517  0.578
2011 Bascom G. Ab-Initio Protein Folding and Small Molecule Dissociation by Potential Energy Based Biased Molecular Dynamics Biophysical Journal. 100: 150a. DOI: 10.1016/J.Bpj.2010.12.1025  0.426
2009 Bascom GD, Guinn T, Andricioaei I. Simulated Single-Molecule FRET Trajectories: A Comparative Analysis Between Three Telomeric G-quadruplexes Biophysical Journal. 96: 344a. DOI: 10.1016/J.Bpj.2008.12.1728  0.551
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