Francesca Massi, Ph.D. - Publications

Affiliations: 
2002 Boston University, Boston, MA, United States 
Area:
protein dynamics and thermodynamics using theoretical and computational methods

26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Basak S, Nobrega RP, Tavella D, Deveau LM, Koga N, Tatsumi-Koga R, Baker D, Massi F, Matthews CR. Networks of electrostatic and hydrophobic interactions modulate the complex folding free energy surface of a designed βα protein. Proceedings of the National Academy of Sciences of the United States of America. PMID 30877249 DOI: 10.1073/pnas.1818744116  0.44
2018 Tavella D, Zitzewitz JA, Massi F. Characterization of TDP-43 RRM2 Partially Folded States and Their Significance to ALS Pathogenesis. Biophysical Journal. PMID 30309612 DOI: 10.1016/j.bpj.2018.09.011  0.44
2018 Massi F, Peng JW. Characterizing Protein Dynamics with NMR R 1ρ Relaxation Experiments. Methods in Molecular Biology (Clifton, N.J.). 1688: 205-221. PMID 29151211 DOI: 10.1007/978-1-4939-7386-6_10  0.32
2016 Tavella D, Deveau LM, Whitfield TW, Massi F. Structural basis of the disorder in the tandem zinc finger domain of the RNA-binding protein Tristetraprolin. Journal of Chemical Theory and Computation. PMID 27487322 DOI: 10.1021/acs.jctc.6b00150  0.44
2015 Deveau LM, Massi F. Three residues make an evolutionary switch for folding and RNA-destabilizing activity in the TTP family of proteins. Acs Chemical Biology. PMID 26551835 DOI: 10.1021/acschembio.5b00639  1
2015 Morgan BR, Deveau LM, Massi F. Probing the structural and dynamical effects of the charged residues of the TZF domain of TIS11d. Biophysical Journal. 108: 1503-15. PMID 25809263 DOI: 10.1016/j.bpj.2015.01.039  1
2014 Zearfoss NR, Deveau LM, Clingman CC, Schmidt E, Johnson ES, Massi F, Ryder SP. A conserved three-nucleotide core motif defines Musashi RNA binding specificity. The Journal of Biological Chemistry. 289: 35530-41. PMID 25368328 DOI: 10.1074/jbc.M114.597112  1
2014 Laine JM, Amat M, Morgan BR, Royer WE, Massi F. Insight into the allosteric mechanism of Scapharca dimeric hemoglobin. Biochemistry. 53: 7199-210. PMID 25356908 DOI: 10.1021/bi500591s  1
2014 Clingman CC, Deveau LM, Hay SA, Genga RM, Shandilya SM, Massi F, Ryder SP. Allosteric inhibition of a stem cell RNA-binding protein by an intermediary metabolite. Elife. 3. PMID 24935936 DOI: 10.7554/eLife.02848  1
2013 Gangadhara BN, Laine JM, Kathuria SV, Massi F, Matthews CR. Clusters of branched aliphatic side chains serve as cores of stability in the native state of the HisF TIM barrel protein. Journal of Molecular Biology. 425: 1065-81. PMID 23333740 DOI: 10.1016/j.jmb.2013.01.002  1
2011 Romano KP, Laine JM, Deveau LM, Cao H, Massi F, Schiffer CA. Molecular mechanisms of viral and host cell substrate recognition by hepatitis C virus NS3/4A protease. Journal of Virology. 85: 6106-16. PMID 21507982 DOI: 10.1128/JVI.00377-11  1
2011 Stewart MD, Morgan B, Massi F, Igumenova TI. Probing the determinants of diacylglycerol binding affinity in the C1B domain of protein kinase Cα. Journal of Molecular Biology. 408: 949-70. PMID 21419781 DOI: 10.1016/j.jmb.2011.03.020  1
2010 Morgan BR, Massi F. Accurate Estimates of Free Energy Changes in Charge Mutations. Journal of Chemical Theory and Computation. 6: 1884-93. PMID 26615847 DOI: 10.1021/ct900565e  1
2010 Ryder SP, Massi F. Insights into the structural basis of RNA recognition by STAR domain proteins. Advances in Experimental Medicine and Biology. 693: 37-53. PMID 21189684 DOI: 10.1007/978-1-4419-7005-3_3  1
2010 Morgan BR, Massi F. A computational study of RNA binding and specificity in the tandem zinc finger domain of TIS11d. Protein Science : a Publication of the Protein Society. 19: 1222-34. PMID 20506496 DOI: 10.1002/pro.401  1
2007 Valentine ER, Ferrage F, Massi F, Cowburn D, Palmer AG. Joint composite-rotation adiabatic-sweep isotope filtration. Journal of Biomolecular Nmr. 38: 11-22. PMID 17353973 DOI: 10.1007/s10858-006-9131-9  1
2006 Massi F, Wang C, Palmer AG. Solution NMR and computer simulation studies of active site loop motion in triosephosphate isomerase. Biochemistry. 45: 10787-94. PMID 16953564 DOI: 10.1021/bi060764c  1
2006 Palmer AG, Massi F. Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy. Chemical Reviews. 106: 1700-19. PMID 16683750 DOI: 10.1021/cr0404287  1
2005 Massi F, Grey MJ, Palmer AG. Microsecond timescale backbone conformational dynamics in ubiquitin studied with NMR R1rho relaxation experiments. Protein Science : a Publication of the Protein Society. 14: 735-42. PMID 15722448 DOI: 10.1110/ps.041139505  1
2004 Massi F, Johnson E, Wang C, Rance M, Palmer AG. NMR R1 rho rotating-frame relaxation with weak radio frequency fields. Journal of the American Chemical Society. 126: 2247-56. PMID 14971961 DOI: 10.1021/ja038721w  1
2003 Massi F, Palmer AG. Temperature dependence of NMR order parameters and protein dynamics. Journal of the American Chemical Society. 125: 11158-9. PMID 16220912 DOI: 10.1021/ja035605k  1
2003 Massi F, Straub JE. Structural and dynamical analysis of the hydration of the Alzheimer's beta-amyloid peptide. Journal of Computational Chemistry. 24: 143-53. PMID 12497595 DOI: 10.1002/jcc.10101  1
2002 Massi F, Klimov D, Thirumalai D, Straub JE. Charge states rather than propensity for beta-structure determine enhanced fibrillogenesis in wild-type Alzheimer's beta-amyloid peptide compared to E22Q Dutch mutant. Protein Science : a Publication of the Protein Society. 11: 1639-47. PMID 12070316 DOI: 10.1110/ps.3150102  1
2001 Massi F, Straub JE. Probing the origins of increased activity of the E22Q "Dutch" mutant Alzheimer's beta-amyloid peptide. Biophysical Journal. 81: 697-709. PMID 11463618 DOI: 10.1016/S0006-3495(01)75734-7  1
2001 Massi F, Peng JW, Lee JP, Straub JE. Simulation study of the structure and dynamics of the Alzheimer's amyloid peptide congener in solution. Biophysical Journal. 80: 31-44. PMID 11159381 DOI: 10.1016/S0006-3495(01)75993-0  1
2001 Massi F, Straub JE. Energy landscape theory for Alzheimer's amyloid beta-peptide fibril elongation. Proteins. 42: 217-29. PMID 11119646 DOI: 10.1002/1097-0134(20010201)42:2<217::AID-PROT90>3.0.CO;2-N  1
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