Ryan W. Benz, Ph.D. - Publications

Affiliations: 
2006 University of California, Irvine, Irvine, CA 
Area:
Theoretical and Computational Chemistry

5/23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 You J, Kao A, Dillon R, Croner LJ, Benz R, Blume JE, Wilcox B. A large-scale and robust dynamic MRM study of colorectal cancer biomarkers. Journal of Proteomics. PMID 29953963 DOI: 10.1016/J.Jprot.2018.06.013  0.326
2016 Wilcox BE, Benz RW, Croner LJ, Dillon R, Jones JJ, Kao A, You J, Blume JE. 862 The Discovery and Validation of Blood Plasma Protein-Based Classifier Panels for Colorectal Cancer and Advanced Adenoma Using a Combined Mass Spectrometry- and ELISA-Based Workflow in Studies Including 1,605 Patient Samples Gastroenterology. 150. DOI: 10.1016/S0016-5085(16)30705-3  0.304
2006 Castro-Román F, Benz RW, White SH, Tobias DJ. Investigation of finite system-size effects in molecular dynamics simulations of lipid bilayers. The Journal of Physical Chemistry. B. 110: 24157-64. PMID 17125387 DOI: 10.1021/Jp064746G  0.514
2006 Benz RW, Nanda H, Castro-Román F, White SH, Tobias DJ. Diffraction-based density restraints for membrane and membrane-peptide molecular dynamics simulations. Biophysical Journal. 91: 3617-29. PMID 16950837 DOI: 10.1529/Biophysj.106.084483  0.53
2005 Benz RW, Castro-Román F, Tobias DJ, White SH. Experimental validation of molecular dynamics simulations of lipid bilayers: a new approach. Biophysical Journal. 88: 805-17. PMID 15533925 DOI: 10.1529/Biophysj.104.046821  0.531
Low-probability matches (unlikely to be authored by this person)
2016 Blume JE, Wilhelmsen M, Benz RW, Brünner N, Christensen IJ, Croner LJ, Dillon R, Hillig T, Jones JJ, Jørgensen LN, Kao A, Klaerke M, Laurberg S, Madsen MR, Nielsen KT, et al. Discovery and Validation of Plasma-Protein Biomarker Panels for the Detection of Colorectal Cancer and Advanced Adenoma in a Danish Collection of Samples from Patients Referred for Diagnostic Colonoscopy. The Journal of Applied Laboratory Medicine. 1: 181-193. PMID 33626780 DOI: 10.1373/Jalm.2016.020271  0.293
2016 Jones JJ, Wilcox BE, Benz RW, Babbar N, Boragine G, Burrell T, Christie EB, Croner LJ, Cun P, Dillon R, Kairs SN, Kao A, Preston R, Schreckengaust SR, Skor H, et al. A Plasma-Based Protein Marker Panel for Colorectal Cancer Detection Identified by Multiplex Targeted Mass Spectrometry. Clinical Colorectal Cancer. 15: 186-194.e13. PMID 27237338 DOI: 10.1016/J.Clcc.2016.02.004  0.287
2017 Croner LJ, Dillon R, Kao A, Kairs SN, Benz R, Christensen IJ, Nielsen HJ, Blume JE, Wilcox B. Discovery and validation of a colorectal cancer classifier in a new blood test with improved performance for high-risk subjects. Clinical Proteomics. 14: 28. PMID 28769740 DOI: 10.1186/S12014-017-9163-Z  0.286
2020 Blume JE, Manning WC, Troiano G, Hornburg D, Figa M, Hesterberg L, Platt TL, Zhao X, Cuaresma RA, Everley PA, Ko M, Liou H, Mahoney M, Ferdosi S, Elgierari EM, ... ... Benz R, et al. Rapid, deep and precise profiling of the plasma proteome with multi-nanoparticle protein corona. Nature Communications. 11: 3662. PMID 32699280 DOI: 10.1038/S41467-020-17033-7  0.278
2013 Wilcox B, Croner LJ, Jones JJ, Benz RW, Dillon R, Skor H, Smith WF, Schreckengaust SR, Doctor KS, Stockfisch TP, Blume J. Su1997 Plasma Protein-Based Biomarker Classifiers That Discriminate Patients With Colon Polyps or Adenomas From Those WHO Do Not As Determined by Colonoscopy Gastroenterology. 144. DOI: 10.1016/S0016-5085(13)61959-9  0.265
2011 Andronico A, Randall A, Benz RW, Baldi P. Data-driven high-throughput prediction of the 3-D structure of small molecules: review and progress. Journal of Chemical Information and Modeling. 51: 760-76. PMID 21417267 DOI: 10.1021/Ci100223T  0.255
2007 Baldi P, Benz RW, Hirschberg DS, Swamidass SJ. Lossless compression of chemical fingerprints using integer entropy codes improves storage and retrieval. Journal of Chemical Information and Modeling. 47: 2098-109. PMID 17967006 DOI: 10.1021/Ci700200N  0.25
2008 Benz RW, Swamidass SJ, Baldi P. Discovery of power-laws in chemical space. Journal of Chemical Information and Modeling. 48: 1138-51. PMID 18522387 DOI: 10.1021/Ci700353M  0.243
2010 Whisenant TC, Ho DT, Benz RW, Rogers JS, Kaake RM, Gordon EA, Huang L, Baldi P, Bardwell L. Computational prediction and experimental verification of new MAP kinase docking sites and substrates including Gli transcription factors. Plos Computational Biology. 6. PMID 20865152 DOI: 10.1371/Journal.Pcbi.1000908  0.229
2023 Huang T, Wang J, Stukalov A, Donovan MKR, Ferdosi S, Williamson L, Just S, Castro G, Cantrell LS, Elgierari E, Benz RW, Huang Y, Motamedchaboki K, Hakimi A, Arrey T, et al. Protein Coronas on Functionalized Nanoparticles Enable Quantitative and Precise Large-Scale Deep Plasma Proteomics. Biorxiv : the Preprint Server For Biology. PMID 37693476 DOI: 10.1101/2023.08.28.555225  0.198
2008 Baldi P, Benz RW. BLASTing small molecules--statistics and extreme statistics of chemical similarity scores. Bioinformatics (Oxford, England). 24: i357-65. PMID 18586735 DOI: 10.1093/bioinformatics/btn187  0.187
2023 Donovan MKR, Huang Y, Blume JE, Wang J, Hornburg D, Ferdosi S, Mohtashemi I, Kim S, Ko M, Benz RW, Platt TL, Batzoglou S, Diaz LA, Farokhzad OC, Siddiqui A. Functionally distinct BMP1 isoforms show an opposite pattern of abundance in plasma from non-small cell lung cancer subjects and controls. Plos One. 18: e0282821. PMID 36989217 DOI: 10.1371/journal.pone.0282821  0.183
2022 Ferdosi S, Tangeysh B, Brown TR, Everley PA, Figa M, McLean M, Elgierari EM, Zhao X, Garcia VJ, Wang T, Chang MEK, Riedesel K, Chu J, Mahoney M, Xia H, ... ... Benz R, et al. Engineered nanoparticles enable deep proteomics studies at scale by leveraging tunable nano-bio interactions. Proceedings of the National Academy of Sciences of the United States of America. 119: e2106053119. PMID 35275789 DOI: 10.1073/pnas.2106053119  0.128
2023 Beck D, Bickus J, Klein E, Miller P, Di Cecca S, Benz R, Barney A, Longton R, Coon A, Smith M, Duncan B. Additive Manufacturing of Multimaterial Composites for Radiation Shielding and Thermal Management. Acs Applied Materials & Interfaces. PMID 37289198 DOI: 10.1021/acsami.2c22478  0.037
1956 OTT DG, HAYES FN, KERR VN, BENZ RW. Inherent inconsistencies in fluorescence and scintillation spectra. Science (New York, N.Y.). 123: 1071. PMID 13324146  0.034
2019 Gornet MG, Peacock J, Claude J, Schranck FW, Copay AG, Eastlack RK, Benz R, Olshen A, Lotz JC. Magnetic resonance spectroscopy (MRS) can identify painful lumbar discs and may facilitate improved clinical outcomes of lumbar surgeries for discogenic pain. European Spine Journal : Official Publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. PMID 30610465 DOI: 10.1007/S00586-018-05873-3  0.021
2000 Wellman DE, Benz RW, Ulery AL. Extraction study for enhanced biodegradation of petroleum hydrocarbons in soil utilizing animal manure amendments Acs National Meeting Book of Abstracts. 40: 10-12.  0.01
1919 Benz RW. Camphorated oil poisoning with no mortality: Report of twenty cases Journal of the American Medical Association. 72: 1217-1218. DOI: 10.1001/jama.1919.02610170019007  0.01
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