Mark Maienschein-Cline, Ph.D. - Publications

2012 Chemistry University of Chicago, Chicago, IL 
theoretical studies of cellular behavior

25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Karki S, Kennedy DE, Mclean K, Grzybowski AT, Maienschein-Cline M, Banerjee S, Xu H, Davis E, Mandal M, Labno C, Powers SE, Le Beau MM, Dinner AR, Singh H, Ruthenburg AJ, et al. Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories. Cell Reports. 24: 2443-2456. PMID 30157436 DOI: 10.1016/j.celrep.2018.07.091  0.96
2017 Krishnamoorthy V, Kannanganat S, Maienschein-Cline M, Cook SL, Chen J, Bahroos N, Sievert E, Corse E, Chong A, Sciammas R. The IRF4 Gene Regulatory Module Functions as a Read-Write Integrator to Dynamically Coordinate T Helper Cell Fate. Immunity. 47: 481-497.e7. PMID 28930660 DOI: 10.1016/j.immuni.2017.09.001  0.44
2017 Desai AA, Lei Z, Bahroos N, Maienschein-Cline M, Saraf SL, Zhang X, Shah BN, Nouraie SM, Abbasi T, Patel AR, Lang RM, Lussier Y, Garcia JG, Gordeuk VR, Machado RF. Association of circulating transcriptomic profiles with mortality in sickle cell disease. Blood. PMID 28373264 DOI: 10.1182/blood-2016-11-752279  0.44
2017 Aakalu VK, Parameswaran S, Maienschein-Cline M, Bahroos N, Shah D, Ali M, Krishnakumar S. Human Lacrimal Gland Gene Expression. Plos One. 12: e0169346. PMID 28081151 DOI: 10.1371/journal.pone.0169346  0.44
2015 Vasudevan D, Hickok JR, Bovee RC, Pham V, Mantell LL, Bahroos N, Kanabar P, Cao XJ, Maienschein-Cline M, Garcia B, Thomas DD. Nitric oxide regulates gene expression in cancers by controlling histone posttranslational modifications. Cancer Research. PMID 26542213 DOI: 10.1158/0008-5472.CAN-15-1582  0.96
2015 Mandal M, Hamel KM, Maienschein-Cline M, Tanaka A, Teng G, Tuteja JH, Bunker JJ, Bahroos N, Eppig JJ, Schatz DG, Clark MR. Histone reader BRWD1 targets and restricts recombination to the Igk locus. Nature Immunology. PMID 26301565 DOI: 10.1038/ni.3249  0.44
2015 Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR. Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data. Plos Computational Biology. 11: e1004094. PMID 25793520 DOI: 10.1371/journal.pcbi.1004094  0.96
2015 Tai LM, Ghura S, Koster KP, Liakaite V, Maienschein-Cline M, Kanabar P, Collins N, Ben-Aissa M, Lei AZ, Bahroos N, Green SJ, Hendrickson B, Van Eldik LJ, LaDu MJ. APOE-modulated Aβ-induced neuroinflammation in Alzheimer's disease: current landscape, novel data, and future perspective. Journal of Neurochemistry. 133: 465-88. PMID 25689586 DOI: 10.1111/jnc.13072  0.96
2015 Mandal M, Hamel KM, Maienschein-Cline M, Tanaka A, Teng G, Tuteja JH, Bunker JJ, Bahroos N, Eppig JJ, Schatz DG, Clark MR. Histone reader BRWD1 targets and restricts recombination to the Igk locus Nature Immunology. DOI: 10.1038/ni.3249  0.96
2014 Kinloch AJ, Chang A, Ko K, Henry Dunand CJ, Henderson S, Maienschein-Cline M, Kaverina N, Rovin BH, Salgado Ferrer M, Wolfgeher D, Liarski V, Haddon DJ, Utz PJ, Wilson PC, Clark MR. Vimentin is a dominant target of in situ humoral immunity in human lupus tubulointerstitial nephritis. Arthritis & Rheumatology (Hoboken, N.J.). 66: 3359-70. PMID 25306868 DOI: 10.1002/art.38888  0.96
2014 Gardeux V, Achour I, Li J, Maienschein-Cline M, Li H, Pesce L, Parinandi G, Bahroos N, Winn R, Foster I, Garcia JG, Lussier YA. 'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. Journal of the American Medical Informatics Association : Jamia. 21: 1015-25. PMID 25301808 DOI: 10.1136/amiajnl-2013-002519  0.96
2014 Maienschein-Cline M, Lei Z, Gardeux V, Abbasi T, Machado RF, Gordeuk V, Desai AA, Saraf S, Bahroos N, Lussier Y. ARTS: automated randomization of multiple traits for study design. Bioinformatics (Oxford, England). 30: 1637-9. PMID 24493035 DOI: 10.1093/bioinformatics/btu075  0.96
2013 Lussier YA, Li H, Maienschein-Cline M. Conquering computational challenges of omics data and post-ENCODE paradigms. Genome Biology. 14: 310. PMID 23998801 DOI: 10.1186/gb-2013-14-8-310  0.96
2013 Ochiai K, Maienschein-Cline M, Simonetti G, Chen J, Rosenthal R, Brink R, Chong AS, Klein U, Dinner AR, Singh H, Sciammas R. Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4. Immunity. 38: 918-29. PMID 23684984 DOI: 10.1016/j.immuni.2013.04.009  0.96
2013 Aghaeepour N, Finak G, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH. Critical assessment of automated flow cytometry data analysis techniques. Nature Methods. 10: 228-38. PMID 23396282 DOI: 10.1038/nmeth.2365  0.96
2012 Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F. Improved predictions of transcription factor binding sites using physicochemical features of DNA. Nucleic Acids Research. 40: e175. PMID 22923524 DOI: 10.1093/nar/gks771  0.96
2012 Ochiai K, Maienschein-Cline M, Mandal M, Triggs JR, Bertolino E, Sciammas R, Dinner AR, Clark MR, Singh H. A self-reinforcing regulatory network triggered by limiting IL-7 activates pre-BCR signaling and differentiation. Nature Immunology. 13: 300-7. PMID 22267219 DOI: 10.1038/ni.2210  0.96
2012 Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR. Discovering transcription factor regulatory targets using gene expression and binding data. Bioinformatics (Oxford, England). 28: 206-13. PMID 22084256 DOI: 10.1093/bioinformatics/btr628  0.96
2011 Dickson A, Maienschein-Cline M, Tovo-Dwyer A, Hammond JR, Dinner AR. Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling. Journal of Chemical Theory and Computation. 7: 2710-2720. PMID 26605464 DOI: 10.1021/ct200371n  0.96
2011 Mandal M, Powers SE, Maienschein-Cline M, Bartom ET, Hamel KM, Kee BL, Dinner AR, Clark MR. Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2. Nature Immunology. 12: 1212-20. PMID 22037603 DOI: 10.1038/ni.2136  0.96
2011 Dickson A, Maienschein-Cline M, Tovo-Dwyer A, Hammond JR, Dinner AR. Flow-dependent unfolding and refolding of an RNA by nonequilibrium umbrella sampling Journal of Chemical Theory and Computation. 7: 2710-2720. DOI: 10.1021/ct200371n  0.96
2010 Maienschein-Cline M, Warmflash A, Dinner AR. Defining cooperativity in gene regulation locally through intrinsic noise. Iet Systems Biology. 4: 379-92. PMID 21073237 DOI: 10.1049/iet-syb.2009.0070  0.96
2007 Maienschein-Cline MG, Londergan CH. The CN stretching band of aliphatic thiocyanate is sensitive to solvent dynamics and specific solvation. The Journal of Physical Chemistry. A. 111: 10020-5. PMID 17867661 DOI: 10.1021/jp0761158  0.96
2007 FitzPatrick BL, Maienschein-Cline M, Butler LJ, Lee SH, Lin JJ. Determining the partial photoionization cross-sections of ethyl radicals. The Journal of Physical Chemistry. A. 111: 12417-22. PMID 17760439 DOI: 10.1021/jp073828h  0.96
2005 Whitman PK, Hahn D, Soules T, Norton M, Dixit S, Donohue EE, Folta J, Hollingsworth W, Maienschein-Cline M. Performance of thin borosilicate glass sheets at 351-nm Proceedings of Spie - the International Society For Optical Engineering. 5647: 333-342. DOI: 10.1117/12.585946  0.96
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