Chunxiao Song, Ph.D. - Publications

2013 Chemistry University of Chicago, Chicago, IL 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Li C, Dong L, Su R, Bi Y, Qing Y, Deng X, Zhou Y, Hu C, Yu M, Huang H, Jiang X, Li X, He X, Zou D, Shen C, ... ... Song C, et al. Homoharringtonine exhibits potent anti-tumor effect and modulates DNA epigenome in acute myeloid leukemia by targeting SP1/TET1/5hmC. Haematologica. PMID 30975912 DOI: 10.3324/haematol.2018.208835  0.44
2016 Yang YA, Zhao JC, Fong KW, Kim J, Li S, Song C, Song B, Zheng B, He C, Yu J. FOXA1 potentiates lineage-specific enhancer activation through modulating TET1 expression and function. Nucleic Acids Research. PMID 27257062 DOI: 10.1093/nar/gkw498  0.48
2016 Huang H, Jiang X, Wang J, Li Y, Song CX, Chen P, Li S, Gurbuxani S, Arnovitz S, Wang Y, Weng H, Neilly MB, He C, Li Z, Chen J. Identification of MLL-fusion/MYC⊣miR-26⊣TET1 signaling circuit in MLL-rearranged leukemia. Cancer Letters. PMID 26791235 DOI: 10.1016/j.canlet.2015.12.032  0.96
2016 Chen C, Song J, Song C, Lv G, Li Z. Ab initio and direct dynamics study on the hydrogen abstraction reaction C2H3+CH3CHO Computational and Theoretical Chemistry. 1075: 63-69. DOI: 10.1016/j.comptc.2015.11.018  0.44
2015 Nakane T, Song C, Suzuki M, Nango E, Kobayashi J, Masuda T, Inoue S, Mizohata E, Nakatsu T, Tanaka T, Tanaka R, Shimamura T, Tono K, Joti Y, Kameshima T, et al. Native sulfur/chlorine SAD phasing for serial femtosecond crystallography. Acta Crystallographica. Section D, Biological Crystallography. 71: 2519-25. PMID 26627659 DOI: 10.1107/S139900471501857X  0.4
2015 Li P, Gao Y, Li F, Pan Q, Liu Z, Lu X, Song C, Diao X. MicroRNA-18a regulates invasive meningiomas via hypoxia-inducible factor-1α. Experimental and Therapeutic Medicine. 10: 1165-1170. PMID 26622458 DOI: 10.3892/etm.2015.2630  0.48
2015 Fu Y, Liu H, Song C, Zhang F, Liu Y, Wu J, Wen X, Liang C, Ma K, Li L, Zhang X, Shao X, Sun Y, Du Y, Song Y. Mangiferin regulates cognitive deficits and heme oxygenase-1 induced by lipopolysaccharide in mice. International Immunopharmacology. PMID 26558697 DOI: 10.1016/j.intimp.2015.10.035  0.32
2015 Chen Y, Chen S, Song C, Yin Z, Chen Z, Jia R, Liang X, Li L, Zou Y, He C, Ye G, Lv C. Acute and subchronic toxicity as well as evaluation of safety pharmacology of traditional Chinese medicine "Huhezi". International Journal of Clinical and Experimental Medicine. 8: 14553-64. PMID 26550447  0.96
2015 Wang Z, Zhu J, Xue Y, Song C, Bi N. Cell recognition based on topological sparse coding for microscopy imaging of focused ultrasound treatment. Bmc Medical Imaging. 15: 46. PMID 26498225 DOI: 10.1186/s12880-015-0087-7  0.36
2015 Jiang T, Dai Y, Miao M, Zhang Y, Song C, Wang Z. [Evaluation study on a new method of dietary assessment with instant photography applied in urban pregnant women in Nanjing city]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 44: 586-92. PMID 26454956  0.36
2015 Gao K, Shen Z, Yuan Y, Han D, Song C, Guo Y, Mei X. Simvastatin inhibits neural cell apoptosis and promotes locomotor recovery via activation of Wnt/β-catenin signaling pathway after spinal cord injury. Journal of Neurochemistry. PMID 26443048 DOI: 10.1111/jnc.13382  0.48
2015 Wei Y, Zheng Q, Tang G, Song C, Wang G, Zhang Y, Xiao Y, Zeng X, Wang Z, Xiao J, Zheng X. Synthesis and Anti-Thyroid Cancer Effect of Iodo-Chrysin Derivatives. Medicinal Chemistry (Shariqah (United Arab Emirates)). PMID 26392173  0.36
2015 Hu J, Chen C, Liu Q, Liu B, Song C, Zhu S, Wu C, Liu S, Yu H, Yao D, Kang J, Zhu L. The role of the miR-31/FIH1 pathway in TGF-β-induced liver fibrosis. Clinical Science (London, England : 1979). 129: 305-17. PMID 25728779 DOI: 10.1042/CS20140012  0.44
2015 Lu X, Han D, Zhao BS, Song CX, Zhang LS, Doré LC, He C. Base-resolution maps of 5-formylcytosine and 5-carboxylcytosine reveal genome-wide DNA demethylation dynamics. Cell Research. 25: 386-9. PMID 25591929 DOI: 10.1038/cr.2015.5  0.48
2015 Yu M, Song CX, He C. Detection of mismatched 5-hydroxymethyluracil in DNA by selective chemical labeling. Methods (San Diego, Calif.). 72: 16-20. PMID 25462560 DOI: 10.1016/j.ymeth.2014.11.007  0.48
2015 Liu Y, Yang Y, Mai S, Wang D, Song C. Investigation into spatter behavior during selective laser melting of AISI 316L stainless steel powder Materials and Design. 87: 797-806. DOI: 10.1016/j.matdes.2015.08.086  0.32
2015 Liu Y, Zhou X, Wang D, Song C, Liu J. A diffusivity model for predicting VOC diffusion in porous building materials based on fractal theory Journal of Hazardous Materials. 299: 685-695. DOI: 10.1016/j.jhazmat.2015.08.002  0.32
2014 Tsai YP, Chen HF, Chen SY, Cheng WC, Wang HW, Shen ZJ, Song C, Teng SC, He C, Wu KJ. TET1 regulates hypoxia-induced epithelial-mesenchymal transition by acting as a co-activator. Genome Biology. 15: 513. PMID 25517638 DOI: 10.1186/s13059-014-0513-0  0.96
2014 Zhang X, Liu S, Chang T, Xu J, Zhang C, Tian F, Sun Y, Song C, Yi W, Lin H, Li Z, Yang K. Intrathymic Tfh/B Cells Interaction Leads to Ectopic GCs Formation and Anti-AChR Antibody Production: Central Role in Triggering MG Occurrence. Molecular Neurobiology. PMID 25407929 DOI: 10.1007/s12035-014-8985-1  0.44
2014 Hon GC, Song CX, Du T, Jin F, Selvaraj S, Lee AY, Yen CA, Ye Z, Mao SQ, Wang BA, Kuan S, Edsall LE, Zhao BS, Xu GL, He C, et al. 5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation. Molecular Cell. 56: 286-97. PMID 25263596 DOI: 10.1016/j.molcel.2014.08.026  0.96
2014 Shen L, Song CX, He C, Zhang Y. Mechanism and function of oxidative reversal of DNA and RNA methylation. Annual Review of Biochemistry. 83: 585-614. PMID 24905787 DOI: 10.1146/annurev-biochem-060713-035513  0.96
2014 Wen L, Li X, Yan L, Tan Y, Li R, Zhao Y, Wang Y, Xie J, Zhang Y, Song C, Yu M, Liu X, Zhu P, Li X, Hou Y, et al. Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain. Genome Biology. 15: R49. PMID 24594098 DOI: 10.1186/gb-2014-15-3-r49  0.96
2014 Madzo J, Liu H, Rodriguez A, Vasanthakumar A, Sundaravel S, Caces DB, Looney TJ, Zhang L, Lepore JB, Macrae T, Duszynski R, Shih AH, Song CX, Yu M, Yu Y, et al. Hydroxymethylation at gene regulatory regions directs stem/early progenitor cell commitment during erythropoiesis. Cell Reports. 6: 231-44. PMID 24373966 DOI: 10.1016/j.celrep.2013.11.044  0.96
2013 Chen CC, Xiao S, Xie D, Cao X, Song CX, Wang T, He C, Zhong S. Understanding variation in transcription factor binding by modeling transcription factor genome-epigenome interactions. Plos Computational Biology. 9: e1003367. PMID 24339764 DOI: 10.1371/journal.pcbi.1003367  0.96
2013 Song CX, He C. Potential functional roles of DNA demethylation intermediates. Trends in Biochemical Sciences. 38: 480-4. PMID 23932479 DOI: 10.1016/j.tibs.2013.07.003  0.96
2013 Huang H, Jiang X, Li Z, Li Y, Song CX, He C, Sun M, Chen P, Gurbuxani S, Wang J, Hong GM, Elkahloun AG, Arnovitz S, Wang J, Szulwach K, et al. TET1 plays an essential oncogenic role in MLL-rearranged leukemia. Proceedings of the National Academy of Sciences of the United States of America. 110: 11994-9. PMID 23818607 DOI: 10.1073/pnas.1310656110  0.96
2013 Gan H, Wen L, Liao S, Lin X, Ma T, Liu J, Song CX, Wang M, He C, Han C, Tang F. Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis. Nature Communications. 4: 1995. PMID 23759713 DOI: 10.1038/ncomms2995  0.96
2013 Lu X, Song CX, Szulwach K, Wang Z, Weidenbacher P, Jin P, He C. Chemical modification-assisted bisulfite sequencing (CAB-Seq) for 5-carboxylcytosine detection in DNA. Journal of the American Chemical Society. 135: 9315-7. PMID 23758547 DOI: 10.1021/ja4044856  0.96
2013 Sun M, Song CX, Huang H, Frankenberger CA, Sankarasharma D, Gomes S, Chen P, Chen J, Chada KK, He C, Rosner MR. HMGA2/TET1/HOXA9 signaling pathway regulates breast cancer growth and metastasis. Proceedings of the National Academy of Sciences of the United States of America. 110: 9920-5. PMID 23716660 DOI: 10.1073/pnas.1305172110  0.96
2013 Wang T, Wu H, Li Y, Szulwach KE, Lin L, Li X, Chen IP, Goldlust IS, Chamberlain SJ, Dodd A, Gong H, Ananiev G, Han JW, Yoon YS, Rudd MK, ... ... Song CX, et al. Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency. Nature Cell Biology. 15: 700-11. PMID 23685628 DOI: 10.1038/ncb2748  0.96
2013 Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, Li L, Xu GL, Jin P, et al. Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming. Cell. 153: 678-91. PMID 23602153 DOI: 10.1016/j.cell.2013.04.001  0.96
2013 He C, Song CH, Cheng L, Chen T, Liu C, Liu Z, Yang PC. Measles virus-derived peptide/food antigen adducts facilitate the establishment of antigen specific oral tolerance. Journal of Physiology and Pharmacology : An Official Journal of the Polish Physiological Society. 64: 95-102. PMID 23568976  0.96
2013 Zhang L, Szulwach KE, Hon GC, Song CX, Park B, Yu M, Lu X, Dai Q, Wang X, Street CR, Tan H, Min JH, Ren B, Jin P, He C. Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing. Nature Communications. 4: 1517. PMID 23443545 DOI: 10.1038/ncomms2527  0.96
2013 Yu P, Xiao S, Xin X, Song CX, Huang W, McDee D, Tanaka T, Wang T, He C, Zhong S. Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation. Genome Research. 23: 352-64. PMID 23033340 DOI: 10.1101/gr.144949.112  0.96
2012 Szulwach KE, Song CX, He C, Jin P. 5-Hydroxymethylcytosine (5-hmC) Specific Enrichment. Bio-Protocol. 2. PMID 27453898  0.96
2012 Yu M, Hon GC, Szulwach KE, Song CX, Jin P, Ren B, He C. Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine. Nature Protocols. 7: 2159-70. PMID 23196972 DOI: 10.1038/nprot.2012.137  0.96
2012 Song CX, Yi C, He C. Mapping recently identified nucleotide variants in the genome and transcriptome. Nature Biotechnology. 30: 1107-16. PMID 23138310 DOI: 10.1038/nbt.2398  0.96
2012 Song CX, He C. Balance of DNA methylation and demethylation in cancer development. Genome Biology. 13: 173. PMID 23092522 DOI: 10.1186/gb-2012-13-10-2012  0.96
2012 Li Y, Song CX, He C, Jin P. Selective capture of 5-hydroxymethylcytosine from genomic DNA. Journal of Visualized Experiments : Jove. PMID 23070273 DOI: 10.3791/4441  0.96
2012 Wang T, Pan Q, Lin L, Szulwach KE, Song CX, He C, Wu H, Warren ST, Jin P, Duan R, Li X. Genome-wide DNA hydroxymethylation changes are associated with neurodevelopmental genes in the developing human cerebellum. Human Molecular Genetics. 21: 5500-10. PMID 23042784 DOI: 10.1093/hmg/dds394  0.96
2012 Kellinger MW, Song CX, Chong J, Lu XY, He C, Wang D. 5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription. Nature Structural & Molecular Biology. 19: 831-3. PMID 22820989 DOI: 10.1038/nsmb.2346  0.96
2012 Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li X, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell. 149: 1368-80. PMID 22608086 DOI: 10.1016/j.cell.2012.04.027  0.96
2012 Yao Q, Song CX, He C, Kumaran D, Dunn JJ. Heterologous expression and purification of Arabidopsis thaliana VIM1 protein: in vitro evidence for its inability to recognize hydroxymethylcytosine, a rare base in Arabidopsis DNA. Protein Expression and Purification. 83: 104-11. PMID 22459921 DOI: 10.1016/j.pep.2012.03.003  0.96
2012 Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, He C, Korlach J. Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine. Nature Methods. 9: 75-7. PMID 22101853 DOI: 10.1038/nmeth.1779  0.96
2011 Song CX, He C. The hunt for 5-hydroxymethylcytosine: the sixth base. Epigenomics. 3: 521-3. PMID 22126239 DOI: 10.2217/epi.11.74  0.96
2011 Szulwach KE, Li X, Li Y, Song CX, Wu H, Dai Q, Irier H, Upadhyay AK, Gearing M, Levey AI, Vasanthakumar A, Godley LA, Chang Q, Cheng X, He C, et al. 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nature Neuroscience. 14: 1607-16. PMID 22037496 DOI: 10.1038/nn.2959  0.96
2011 Moran-Crusio K, Reavie L, Shih A, Abdel-Wahab O, Ndiaye-Lobry D, Lobry C, Figueroa ME, Vasanthakumar A, Patel J, Zhao X, Perna F, Pandey S, Madzo J, Song C, Dai Q, et al. Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation. Cancer Cell. 20: 11-24. PMID 21723200 DOI: 10.1016/j.ccr.2011.06.001  0.96
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